Wall clock time and date at job start Tue Mar 31 2020 11:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52998 * 109.47261 * 2 1 4 4 C 1.53001 * 109.47412 * 221.37213 * 3 2 1 5 5 C 1.53001 * 109.46898 * 101.37330 * 3 2 1 6 6 N 1.46495 * 109.47173 * 341.37626 * 3 2 1 7 7 C 1.46497 * 120.00203 * 96.42734 * 6 3 2 8 8 C 1.50704 * 109.46871 * 246.02337 * 7 6 3 9 9 H 1.08000 * 119.99981 * 356.12061 * 8 7 6 10 10 C 1.37882 * 120.00031 * 176.13051 * 8 7 6 11 11 N 1.31511 * 120.00088 * 179.97438 * 10 8 7 12 12 Si 1.86803 * 119.99717 * 359.97438 * 10 8 7 13 13 H 1.48505 * 109.46871 * 90.00628 * 12 10 8 14 14 H 1.48492 * 109.47274 * 210.00098 * 12 10 8 15 15 H 1.48498 * 109.47601 * 330.00752 * 12 10 8 16 16 C 1.34778 * 119.99854 * 276.42368 * 6 3 2 17 17 O 1.21277 * 120.00094 * 179.42249 * 16 6 3 18 18 C 1.50703 * 119.99869 * 359.42835 * 16 6 3 19 19 H 1.08999 * 110.66252 * 300.03694 * 18 16 6 20 20 C 1.54703 * 110.75219 * 63.46007 * 18 16 6 21 21 C 1.51651 * 101.98682 * 143.37927 * 20 18 16 22 22 C 1.37743 * 132.15954 * 163.80613 * 21 20 18 23 23 C 1.38351 * 119.97787 * 181.29344 * 22 21 20 24 24 C 1.38293 * 119.76588 * 0.23191 * 23 22 21 25 25 C 1.37934 * 120.34874 * 359.79579 * 24 23 22 26 26 C 1.38885 * 107.03977 * 345.06363 * 21 20 18 27 27 O 1.36129 * 111.22505 * 358.39930 * 26 21 20 28 28 H 1.09006 * 109.47090 * 309.84519 * 1 2 3 29 29 H 1.09000 * 109.47692 * 69.84697 * 1 2 3 30 30 H 1.09004 * 109.47642 * 189.84591 * 1 2 3 31 31 H 1.09004 * 109.46841 * 240.00227 * 2 1 3 32 32 H 1.09006 * 109.47097 * 120.00385 * 2 1 3 33 33 H 1.09001 * 109.47270 * 150.46166 * 4 3 2 34 34 H 1.09001 * 109.47213 * 270.46634 * 4 3 2 35 35 H 1.09000 * 109.46554 * 30.46032 * 4 3 2 36 36 H 1.09002 * 109.47493 * 304.11720 * 5 3 2 37 37 H 1.09004 * 109.47297 * 64.11640 * 5 3 2 38 38 H 1.08997 * 109.46912 * 184.11534 * 5 3 2 39 39 H 1.09000 * 109.47488 * 6.01839 * 7 6 3 40 40 H 1.08996 * 109.47153 * 126.02499 * 7 6 3 41 41 H 0.97000 * 119.99677 * 179.97438 * 11 10 8 42 42 H 1.09002 * 110.93194 * 261.73574 * 20 18 16 43 43 H 1.08998 * 110.93719 * 25.37740 * 20 18 16 44 44 H 1.07996 * 120.01173 * 1.56336 * 22 21 20 45 45 H 1.07999 * 120.11952 * 180.20966 * 23 22 21 46 46 H 1.07998 * 119.82632 * 179.77398 * 24 23 22 47 47 H 1.07993 * 119.87663 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.2306 1.5625 -0.9534 5 6 2.4781 1.8284 1.4142 6 7 0.9687 2.3392 -0.4411 7 6 0.1405 3.0331 0.5482 8 6 -1.2760 2.5257 0.4619 9 1 -1.5474 1.8089 -0.2990 10 6 -2.2255 2.9769 1.3541 11 7 -3.4616 2.5346 1.2785 12 14 -1.7558 4.2165 2.6703 13 1 -1.9530 5.5924 2.1474 14 1 -2.6106 4.0150 3.8677 15 1 -0.3305 4.0278 3.0421 16 6 0.7453 2.5258 -1.7570 17 8 -0.1482 3.2600 -2.1222 18 6 1.6057 1.8221 -2.7747 19 1 2.6515 2.1057 -2.6561 20 6 1.4344 0.2881 -2.6705 21 6 1.5131 -0.1370 -4.1241 22 6 1.7214 -1.3616 -4.7192 23 6 1.7724 -1.4603 -6.0982 24 6 1.6185 -0.3258 -6.8739 25 6 1.4104 0.9016 -6.2800 26 6 1.3545 1.0090 -4.8924 27 8 1.1499 2.1033 -4.1089 28 1 -0.3633 0.6585 0.7891 29 1 -0.3634 0.3540 -0.9647 30 1 -0.3634 -1.0125 0.1757 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.2677 2.5719 -1.3630 34 1 4.1530 1.3565 -0.4105 35 1 3.1191 0.8445 -1.7659 36 1 1.6504 1.6731 2.1062 37 1 3.3236 1.2093 1.7143 38 1 2.7726 2.8777 1.4296 39 1 0.5334 2.8449 1.5473 40 1 0.1556 4.1043 0.3475 41 1 -4.1295 2.8518 1.9064 42 1 2.2420 -0.1553 -2.0880 43 1 0.4640 0.0326 -2.2449 44 1 1.8405 -2.2451 -4.1097 45 1 1.9322 -2.4199 -6.5673 46 1 1.6618 -0.4012 -7.9504 47 1 1.2907 1.7825 -6.8931 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189900774.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:28 Heat of formation + Delta-G solvation = 41.720458 kcal Electronic energy + Delta-G solvation = -28890.988626 eV Core-core repulsion = 25235.878041 eV Total energy + Delta-G solvation = -3655.110585 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.76640 -39.68487 -37.37933 -36.75251 -33.65770 -32.57762 -31.68133 -30.85053 -30.19604 -29.91896 -27.73743 -26.69260 -24.47540 -22.91688 -22.44267 -21.88809 -21.76546 -20.77125 -18.36221 -17.43711 -17.27447 -16.85651 -16.00956 -15.71279 -15.19716 -14.89478 -14.66540 -14.56937 -14.06918 -13.76533 -13.72096 -13.56715 -13.24233 -12.89349 -12.76688 -12.57924 -12.29425 -12.12570 -12.01587 -11.84275 -11.67743 -11.58063 -11.46849 -11.10672 -10.84305 -10.75115 -10.73063 -10.64913 -10.38075 -10.33655 -9.95674 -9.77550 -9.30071 -8.89439 -8.84833 -8.54061 -8.03238 -7.71724 -6.04119 -3.99316 1.28328 1.38950 3.04172 3.23680 3.27090 3.32357 3.36170 3.68890 3.91658 4.38730 4.40249 4.59101 4.71141 4.82177 4.93853 4.99035 5.01179 5.07339 5.23899 5.26248 5.26647 5.36986 5.50678 5.54098 5.59268 5.66372 5.74694 5.83956 5.88929 5.94140 6.00610 6.06197 6.16246 6.30100 6.34079 6.38711 6.42925 6.45458 6.58748 6.60258 6.68821 6.77983 6.95575 7.24385 7.36922 7.46937 7.59791 8.20911 8.51165 8.96787 9.03962 9.54372 11.08573 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018669 B = 0.004507 C = 0.004206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.448328 B = 6210.770781 C = 6654.909377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.156 4.156 3 C 0.161 3.839 4 C -0.201 4.201 5 C -0.150 4.150 6 N -0.580 5.580 7 C 0.212 3.788 8 C -0.515 4.515 9 H 0.087 0.913 10 C 0.071 3.929 11 N -0.895 5.895 12 Si 0.869 3.131 13 H -0.276 1.276 14 H -0.286 1.286 15 H -0.266 1.266 16 C 0.514 3.486 17 O -0.500 6.500 18 C 0.040 3.960 19 H 0.131 0.869 20 C -0.134 4.134 21 C -0.174 4.174 22 C -0.070 4.070 23 C -0.155 4.155 24 C -0.088 4.088 25 C -0.142 4.142 26 C 0.111 3.889 27 O -0.277 6.277 28 H 0.109 0.891 29 H 0.055 0.945 30 H 0.034 0.966 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.047 0.953 40 H 0.020 0.980 41 H 0.263 0.737 42 H 0.127 0.873 43 H 0.115 0.885 44 H 0.124 0.876 45 H 0.125 0.875 46 H 0.128 0.872 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.956 -8.538 -7.564 20.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.194 4.194 3 C 0.075 3.925 4 C -0.258 4.258 5 C -0.208 4.208 6 N -0.314 5.314 7 C 0.093 3.907 8 C -0.554 4.554 9 H 0.105 0.895 10 C -0.131 4.131 11 N -0.534 5.534 12 Si 0.696 3.304 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.191 1.191 16 C 0.298 3.702 17 O -0.373 6.373 18 C -0.019 4.019 19 H 0.147 0.853 20 C -0.169 4.169 21 C -0.175 4.175 22 C -0.088 4.088 23 C -0.174 4.174 24 C -0.106 4.106 25 C -0.161 4.161 26 C 0.065 3.935 27 O -0.190 6.190 28 H 0.128 0.872 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.038 0.962 41 H 0.073 0.927 42 H 0.144 0.856 43 H 0.133 0.867 44 H 0.142 0.858 45 H 0.143 0.857 46 H 0.146 0.854 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 16.169 -7.855 -7.698 19.555 hybrid contribution 0.023 0.577 0.835 1.015 sum 16.192 -7.279 -6.863 19.033 Atomic orbital electron populations 1.22465 0.92952 1.01438 1.05172 1.22762 0.99125 0.95141 1.02332 1.20447 0.86584 0.90585 0.94841 1.23404 0.98513 1.03020 1.00831 1.22187 1.01599 1.01683 0.95312 1.48022 1.33269 1.45108 1.05022 1.19824 0.91276 0.92284 0.87348 1.21375 0.91361 1.26357 1.16277 0.89548 1.24839 0.94810 0.95963 0.97461 1.69888 1.02090 1.44013 1.37383 0.86977 0.78694 0.82790 0.81909 1.20158 1.21208 1.19137 1.19603 0.84721 0.82958 0.82902 1.90764 1.30693 1.36690 1.79144 1.24566 1.00198 0.95305 0.81841 0.85255 1.23136 1.06622 0.93451 0.93727 1.20936 1.06767 0.94223 0.95553 1.20283 0.98243 0.95698 0.94614 1.20975 1.04501 0.98593 0.93296 1.20823 0.98472 0.91569 0.99735 1.20252 1.06240 0.98920 0.90644 1.19724 0.95095 0.86251 0.92395 1.86962 1.78200 1.34266 1.19550 0.87226 0.92655 0.94646 0.90750 0.91657 0.91208 0.91079 0.89649 0.90745 0.91793 0.92165 0.93549 0.96208 0.92681 0.85618 0.86723 0.85844 0.85720 0.85410 0.85531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.97 7.19 37.15 0.27 -2.70 16 2 C -0.16 -2.12 4.84 -26.74 -0.13 -2.25 16 3 C 0.16 2.30 0.82 -131.82 -0.11 2.19 16 4 C -0.20 -2.23 6.89 37.16 0.26 -1.97 16 5 C -0.15 -1.97 6.91 37.16 0.26 -1.72 16 6 N -0.58 -11.20 1.56 -160.18 -0.25 -11.45 16 7 C 0.21 4.89 3.43 -5.19 -0.02 4.87 16 8 C -0.52 -14.11 6.44 -34.44 -0.22 -14.33 16 9 H 0.09 2.62 6.08 -52.49 -0.32 2.31 16 10 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 11 N -0.90 -27.23 13.96 55.43 0.77 -26.45 16 12 Si 0.87 20.92 27.55 -169.99 -4.68 16.23 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.27 -5.89 6.43 56.52 0.36 -5.53 16 16 C 0.51 10.83 5.37 -10.98 -0.06 10.77 16 17 O -0.50 -13.33 15.95 -13.48 -0.22 -13.54 16 18 C 0.04 0.66 2.81 -26.99 -0.08 0.58 16 19 H 0.13 1.77 4.28 -51.93 -0.22 1.55 16 20 C -0.13 -1.91 3.70 -26.52 -0.10 -2.01 16 21 C -0.17 -2.46 6.27 -104.09 -0.65 -3.11 16 22 C -0.07 -0.81 10.03 -39.72 -0.40 -1.21 16 23 C -0.16 -1.61 10.07 -39.52 -0.40 -2.01 16 24 C -0.09 -0.94 10.02 -39.67 -0.40 -1.34 16 25 C -0.14 -1.88 10.06 -39.30 -0.40 -2.27 16 26 C 0.11 1.77 7.03 -38.95 -0.27 1.50 16 27 O -0.28 -5.22 10.39 -39.19 -0.41 -5.63 16 28 H 0.11 2.38 4.73 -51.93 -0.25 2.13 16 29 H 0.05 1.13 3.78 -51.93 -0.20 0.93 16 30 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.86 3.95 -51.93 -0.21 0.65 16 32 H 0.06 0.78 7.70 -51.93 -0.40 0.38 16 33 H 0.07 0.83 6.22 -51.93 -0.32 0.50 16 34 H 0.07 0.61 7.76 -51.93 -0.40 0.21 16 35 H 0.09 0.87 3.19 -51.93 -0.17 0.71 16 36 H 0.07 1.11 6.68 -51.93 -0.35 0.76 16 37 H 0.06 0.64 8.02 -51.93 -0.42 0.23 16 38 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 39 H 0.05 0.99 4.03 -51.93 -0.21 0.78 16 40 H 0.02 0.50 7.75 -51.93 -0.40 0.09 16 41 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.13 1.41 3.19 -51.93 -0.17 1.24 16 43 H 0.12 1.91 4.56 -51.93 -0.24 1.67 16 44 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 45 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 46 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 47 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 336.14 15.07 5.07 5.07 Total: -1.00 -34.21 336.14 -8.23 -42.43 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -5.97 Total: 6.44 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: -2.54 Total: -13.11 kcal Atomic # 7 Polarization: -38.42 SS G_CDS: 0.52 Total: -37.90 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.62 Total: -19.17 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.68 Total: 16.23 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.21 -8.23 -42.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189900774.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.152 kcal (2) G-P(sol) polarization free energy of solvation -34.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds