Wall clock time and date at job start Tue Mar 31 2020 11:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52998 * 109.47261 * 2 1 4 4 C 1.53001 * 109.47412 * 221.37213 * 3 2 1 5 5 C 1.53001 * 109.46898 * 101.37330 * 3 2 1 6 6 N 1.46495 * 109.47173 * 341.37626 * 3 2 1 7 7 C 1.46497 * 120.00203 * 96.42734 * 6 3 2 8 8 C 1.50704 * 109.46871 * 246.02337 * 7 6 3 9 9 H 1.08000 * 119.99981 * 356.12061 * 8 7 6 10 10 C 1.37882 * 120.00031 * 176.13051 * 8 7 6 11 11 N 1.31511 * 120.00088 * 179.97438 * 10 8 7 12 12 Si 1.86803 * 119.99717 * 359.97438 * 10 8 7 13 13 H 1.48505 * 109.46871 * 90.00628 * 12 10 8 14 14 H 1.48492 * 109.47274 * 210.00098 * 12 10 8 15 15 H 1.48498 * 109.47601 * 330.00752 * 12 10 8 16 16 C 1.34778 * 119.99854 * 276.42368 * 6 3 2 17 17 O 1.21277 * 120.00094 * 179.42249 * 16 6 3 18 18 C 1.50703 * 119.99869 * 359.42835 * 16 6 3 19 19 H 1.08999 * 110.66252 * 300.03694 * 18 16 6 20 20 C 1.54703 * 110.75219 * 63.46007 * 18 16 6 21 21 C 1.51651 * 101.98682 * 143.37927 * 20 18 16 22 22 C 1.37743 * 132.15954 * 163.80613 * 21 20 18 23 23 C 1.38351 * 119.97787 * 181.29344 * 22 21 20 24 24 C 1.38293 * 119.76588 * 0.23191 * 23 22 21 25 25 C 1.37934 * 120.34874 * 359.79579 * 24 23 22 26 26 C 1.38885 * 107.03977 * 345.06363 * 21 20 18 27 27 O 1.36129 * 111.22505 * 358.39930 * 26 21 20 28 28 H 1.09006 * 109.47090 * 309.84519 * 1 2 3 29 29 H 1.09000 * 109.47692 * 69.84697 * 1 2 3 30 30 H 1.09004 * 109.47642 * 189.84591 * 1 2 3 31 31 H 1.09004 * 109.46841 * 240.00227 * 2 1 3 32 32 H 1.09006 * 109.47097 * 120.00385 * 2 1 3 33 33 H 1.09001 * 109.47270 * 150.46166 * 4 3 2 34 34 H 1.09001 * 109.47213 * 270.46634 * 4 3 2 35 35 H 1.09000 * 109.46554 * 30.46032 * 4 3 2 36 36 H 1.09002 * 109.47493 * 304.11720 * 5 3 2 37 37 H 1.09004 * 109.47297 * 64.11640 * 5 3 2 38 38 H 1.08997 * 109.46912 * 184.11534 * 5 3 2 39 39 H 1.09000 * 109.47488 * 6.01839 * 7 6 3 40 40 H 1.08996 * 109.47153 * 126.02499 * 7 6 3 41 41 H 0.97000 * 119.99677 * 179.97438 * 11 10 8 42 42 H 1.09002 * 110.93194 * 261.73574 * 20 18 16 43 43 H 1.08998 * 110.93719 * 25.37740 * 20 18 16 44 44 H 1.07996 * 120.01173 * 1.56336 * 22 21 20 45 45 H 1.07999 * 120.11952 * 180.20966 * 23 22 21 46 46 H 1.07998 * 119.82632 * 179.77398 * 24 23 22 47 47 H 1.07993 * 119.87663 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.2306 1.5625 -0.9534 5 6 2.4781 1.8284 1.4142 6 7 0.9687 2.3392 -0.4411 7 6 0.1405 3.0331 0.5482 8 6 -1.2760 2.5257 0.4619 9 1 -1.5474 1.8089 -0.2990 10 6 -2.2255 2.9769 1.3541 11 7 -3.4616 2.5346 1.2785 12 14 -1.7558 4.2165 2.6703 13 1 -1.9530 5.5924 2.1474 14 1 -2.6106 4.0150 3.8677 15 1 -0.3305 4.0278 3.0421 16 6 0.7453 2.5258 -1.7570 17 8 -0.1482 3.2600 -2.1222 18 6 1.6057 1.8221 -2.7747 19 1 2.6515 2.1057 -2.6561 20 6 1.4344 0.2881 -2.6705 21 6 1.5131 -0.1370 -4.1241 22 6 1.7214 -1.3616 -4.7192 23 6 1.7724 -1.4603 -6.0982 24 6 1.6185 -0.3258 -6.8739 25 6 1.4104 0.9016 -6.2800 26 6 1.3545 1.0090 -4.8924 27 8 1.1499 2.1033 -4.1089 28 1 -0.3633 0.6585 0.7891 29 1 -0.3634 0.3540 -0.9647 30 1 -0.3634 -1.0125 0.1757 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.2677 2.5719 -1.3630 34 1 4.1530 1.3565 -0.4105 35 1 3.1191 0.8445 -1.7659 36 1 1.6504 1.6731 2.1062 37 1 3.3236 1.2093 1.7143 38 1 2.7726 2.8777 1.4296 39 1 0.5334 2.8449 1.5473 40 1 0.1556 4.1043 0.3475 41 1 -4.1295 2.8518 1.9064 42 1 2.2420 -0.1553 -2.0880 43 1 0.4640 0.0326 -2.2449 44 1 1.8405 -2.2451 -4.1097 45 1 1.9322 -2.4199 -6.5673 46 1 1.6618 -0.4012 -7.9504 47 1 1.2907 1.7825 -6.8931 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189900774.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:27 Heat of formation + Delta-G solvation = 19.742087 kcal Electronic energy + Delta-G solvation = -28891.941680 eV Core-core repulsion = 25235.878041 eV Total energy + Delta-G solvation = -3656.063639 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.00623 -40.96879 -38.62665 -38.14644 -35.39815 -34.13242 -33.20218 -32.22292 -31.29743 -30.94237 -29.44498 -27.78541 -25.78983 -24.36810 -23.86835 -23.13774 -22.85214 -22.06416 -19.81485 -19.19293 -18.53701 -18.10797 -17.20259 -17.16837 -16.66346 -16.45991 -15.93354 -15.69606 -15.60964 -15.03999 -14.87849 -14.82099 -14.55496 -14.47170 -14.20374 -13.85432 -13.70737 -13.45873 -13.14075 -13.10012 -12.97011 -12.80838 -12.63487 -12.55235 -12.51357 -12.23248 -12.13210 -11.84642 -11.74993 -11.62744 -11.60503 -11.19962 -10.92288 -10.72895 -10.56249 -9.79156 -9.41057 -9.08681 -8.24399 -6.23587 0.34413 0.43034 1.30935 1.36094 1.42780 1.64004 1.76243 2.34053 2.55563 2.78471 3.07182 3.20447 3.41031 3.65645 3.72585 3.84154 3.97047 3.97477 4.09233 4.21643 4.28433 4.47881 4.50727 4.55241 4.60187 4.63817 4.68636 4.69407 4.73585 4.86107 4.93348 4.96065 5.00127 5.10549 5.14665 5.23780 5.26987 5.34786 5.38018 5.40901 5.48206 5.51833 5.56257 5.68259 5.77046 5.91006 6.22134 6.34155 6.65898 6.77818 7.26840 7.41867 8.92303 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018669 B = 0.004507 C = 0.004206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.448328 B = 6210.770781 C = 6654.909377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.146 4.146 3 C 0.147 3.853 4 C -0.197 4.197 5 C -0.152 4.152 6 N -0.575 5.575 7 C 0.220 3.780 8 C -0.505 4.505 9 H 0.039 0.961 10 C 0.004 3.996 11 N -0.951 5.951 12 Si 0.938 3.062 13 H -0.283 1.283 14 H -0.281 1.281 15 H -0.229 1.229 16 C 0.504 3.496 17 O -0.578 6.578 18 C 0.046 3.954 19 H 0.165 0.835 20 C -0.123 4.123 21 C -0.186 4.186 22 C -0.071 4.071 23 C -0.145 4.145 24 C -0.083 4.083 25 C -0.156 4.156 26 C 0.067 3.933 27 O -0.320 6.320 28 H 0.069 0.931 29 H 0.022 0.978 30 H 0.042 0.958 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.061 0.939 34 H 0.113 0.887 35 H 0.095 0.905 36 H 0.052 0.948 37 H 0.108 0.892 38 H 0.059 0.941 39 H 0.074 0.926 40 H -0.001 1.001 41 H 0.263 0.737 42 H 0.164 0.836 43 H 0.085 0.915 44 H 0.153 0.847 45 H 0.163 0.837 46 H 0.162 0.838 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.571 -11.009 -7.419 25.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.183 4.183 3 C 0.063 3.937 4 C -0.253 4.253 5 C -0.209 4.209 6 N -0.307 5.307 7 C 0.098 3.902 8 C -0.544 4.544 9 H 0.057 0.943 10 C -0.192 4.192 11 N -0.592 5.592 12 Si 0.762 3.238 13 H -0.209 1.209 14 H -0.206 1.206 15 H -0.152 1.152 16 C 0.291 3.709 17 O -0.457 6.457 18 C -0.012 4.012 19 H 0.182 0.818 20 C -0.158 4.158 21 C -0.187 4.187 22 C -0.089 4.089 23 C -0.163 4.163 24 C -0.101 4.101 25 C -0.175 4.175 26 C 0.022 3.978 27 O -0.234 6.234 28 H 0.088 0.912 29 H 0.041 0.959 30 H 0.061 0.939 31 H 0.119 0.881 32 H 0.114 0.886 33 H 0.080 0.920 34 H 0.131 0.869 35 H 0.113 0.887 36 H 0.071 0.929 37 H 0.127 0.873 38 H 0.078 0.922 39 H 0.092 0.908 40 H 0.017 0.983 41 H 0.072 0.928 42 H 0.180 0.820 43 H 0.103 0.897 44 H 0.171 0.829 45 H 0.180 0.820 46 H 0.179 0.821 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 20.860 -10.378 -7.540 24.488 hybrid contribution -1.451 1.213 0.624 1.991 sum 19.409 -9.165 -6.916 22.551 Atomic orbital electron populations 1.22246 0.96865 1.00502 1.01766 1.22742 0.95138 0.95338 1.05084 1.20984 0.86161 0.89681 0.96846 1.23343 0.98348 1.02890 1.00739 1.22241 1.02377 1.02725 0.93533 1.48086 1.33599 1.45001 1.04018 1.19544 0.89688 0.91299 0.89673 1.21533 0.93894 1.24677 1.14276 0.94319 1.25797 0.94580 0.98371 1.00495 1.70069 1.03636 1.46409 1.39127 0.85860 0.80496 0.78926 0.78524 1.20943 1.20618 1.15203 1.20562 0.84216 0.82004 0.84133 1.90706 1.34183 1.40220 1.80575 1.24680 1.00172 0.96301 0.80051 0.81834 1.23069 1.06275 0.91704 0.94772 1.21038 1.07917 0.94834 0.94872 1.20699 0.97071 0.95430 0.95684 1.21485 1.02006 0.99932 0.92832 1.21265 0.96730 0.90523 1.01565 1.20580 1.06557 1.00476 0.89873 1.20149 0.97974 0.86159 0.93494 1.86894 1.79525 1.36370 1.20616 0.91218 0.95929 0.93926 0.88088 0.88622 0.92041 0.86877 0.88674 0.92885 0.87330 0.92217 0.90828 0.98289 0.92787 0.81974 0.89713 0.82943 0.81978 0.82079 0.85388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.87 7.19 71.98 0.52 -5.36 16 2 C -0.15 -3.58 4.84 30.59 0.15 -3.43 16 3 C 0.15 3.84 0.82 3.60 0.00 3.84 16 4 C -0.20 -3.54 6.89 71.98 0.50 -3.05 16 5 C -0.15 -3.41 6.91 71.98 0.50 -2.91 16 6 N -0.57 -22.70 1.56 -779.09 -1.21 -23.91 16 7 C 0.22 10.44 3.43 85.63 0.29 10.73 16 8 C -0.51 -29.55 6.44 25.60 0.16 -29.39 16 9 H 0.04 2.58 6.08 -2.91 -0.02 2.56 16 10 C 0.00 0.24 5.47 84.66 0.46 0.70 16 11 N -0.95 -61.59 13.96 21.45 0.30 -61.29 16 12 Si 0.94 44.41 27.55 68.60 1.89 46.30 16 13 H -0.28 -13.69 7.11 99.48 0.71 -12.99 16 14 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 15 H -0.23 -9.34 6.43 99.48 0.64 -8.70 16 16 C 0.50 22.49 5.37 87.66 0.47 22.96 16 17 O -0.58 -33.70 15.95 15.19 0.24 -33.46 16 18 C 0.05 1.55 2.81 30.43 0.09 1.64 16 19 H 0.17 4.28 4.28 -2.39 -0.01 4.27 16 20 C -0.12 -3.41 3.70 30.73 0.11 -3.30 16 21 C -0.19 -5.02 6.27 -19.52 -0.12 -5.14 16 22 C -0.07 -1.40 10.03 22.18 0.22 -1.18 16 23 C -0.14 -2.39 10.07 22.31 0.22 -2.17 16 24 C -0.08 -1.54 10.02 22.21 0.22 -1.31 16 25 C -0.16 -4.07 10.06 22.45 0.23 -3.84 16 26 C 0.07 2.16 7.03 22.68 0.16 2.32 16 27 O -0.32 -12.77 10.39 -76.81 -0.80 -13.57 16 28 H 0.07 3.18 4.73 -2.38 -0.01 3.16 16 29 H 0.02 0.98 3.78 -2.39 -0.01 0.97 16 30 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 31 H 0.10 1.93 3.95 -2.38 -0.01 1.92 16 32 H 0.10 1.85 7.70 -2.38 -0.02 1.83 16 33 H 0.06 1.27 6.22 -2.39 -0.01 1.26 16 34 H 0.11 1.19 7.76 -2.39 -0.02 1.17 16 35 H 0.10 1.52 3.19 -2.39 -0.01 1.51 16 36 H 0.05 1.43 6.68 -2.39 -0.02 1.41 16 37 H 0.11 1.52 8.02 -2.39 -0.02 1.50 16 38 H 0.06 1.36 8.13 -2.39 -0.02 1.34 16 39 H 0.07 3.11 4.03 -2.39 -0.01 3.10 16 40 H 0.00 -0.04 7.75 -2.39 -0.02 -0.06 16 41 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 42 H 0.16 3.04 3.19 -2.39 -0.01 3.04 16 43 H 0.08 2.92 4.56 -2.39 -0.01 2.91 16 44 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 45 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 46 H 0.16 1.85 8.06 -2.91 -0.02 1.82 16 47 H 0.13 3.11 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -87.30 336.14 5.56 -81.74 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 0.95 Total: 23.07 kcal Atomic # 6 Polarization: -23.07 SS G_CDS: 4.19 Total: -18.89 kcal Atomic # 7 Polarization: -84.29 SS G_CDS: -0.91 Total: -85.20 kcal Atomic # 8 Polarization: -46.47 SS G_CDS: -0.56 Total: -47.03 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.89 Total: 46.30 kcal Total: -87.30 5.56 -81.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189900774.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.483 kcal (2) G-P(sol) polarization free energy of solvation -87.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds