Wall clock time and date at job start Tue Mar 31 2020 11:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47473 * 2 1 4 4 C 1.52998 * 109.47656 * 143.01144 * 3 2 1 5 5 C 1.53003 * 109.47176 * 23.00825 * 3 2 1 6 6 N 1.46509 * 109.47293 * 263.00985 * 3 2 1 7 7 C 1.46498 * 119.99845 * 102.94459 * 6 3 2 8 8 C 1.50698 * 109.47145 * 265.58281 * 7 6 3 9 9 H 1.08000 * 120.00037 * 4.76496 * 8 7 6 10 10 C 1.37878 * 120.00198 * 184.76662 * 8 7 6 11 11 N 1.31516 * 119.99880 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 120.00145 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47417 * 0.02562 * 12 10 8 14 14 H 1.48505 * 109.47250 * 120.00238 * 12 10 8 15 15 H 1.48506 * 109.47048 * 239.99923 * 12 10 8 16 16 C 1.34771 * 119.99825 * 282.94988 * 6 3 2 17 17 O 1.21525 * 119.99713 * 216.47374 * 16 6 3 18 18 C 1.48063 * 120.00081 * 36.47133 * 16 6 3 19 19 C 1.39573 * 119.97522 * 330.00152 * 18 16 6 20 20 C 1.37775 * 120.02894 * 180.23272 * 19 18 16 21 21 C 1.39806 * 119.96963 * 359.49740 * 20 19 18 22 22 C 1.47397 * 120.02602 * 180.27433 * 21 20 19 23 23 C 1.50701 * 120.00024 * 180.02562 * 22 21 20 24 24 O 1.21221 * 119.99979 * 0.02562 * 22 21 20 25 25 C 1.39803 * 119.94762 * 0.25872 * 21 20 19 26 26 C 1.37775 * 119.96803 * 359.97438 * 25 21 20 27 27 H 1.09000 * 109.46664 * 303.54257 * 1 2 3 28 28 H 1.08998 * 109.47221 * 63.53858 * 1 2 3 29 29 H 1.09003 * 109.47342 * 183.54377 * 1 2 3 30 30 H 1.09002 * 109.47326 * 239.99595 * 2 1 3 31 31 H 1.09003 * 109.47009 * 120.00333 * 2 1 3 32 32 H 1.08995 * 109.47464 * 212.72553 * 4 3 2 33 33 H 1.09001 * 109.46892 * 332.72111 * 4 3 2 34 34 H 1.09004 * 109.47381 * 92.72091 * 4 3 2 35 35 H 1.08997 * 109.47002 * 301.93490 * 5 3 2 36 36 H 1.09002 * 109.46878 * 61.93561 * 5 3 2 37 37 H 1.08999 * 109.46943 * 181.93087 * 5 3 2 38 38 H 1.09001 * 109.47341 * 25.57901 * 7 6 3 39 39 H 1.08995 * 109.47217 * 145.58134 * 7 6 3 40 40 H 0.96997 * 120.00358 * 180.02562 * 11 10 8 41 41 H 1.07993 * 119.98408 * 359.97438 * 19 18 16 42 42 H 1.07994 * 120.01608 * 179.77735 * 20 19 18 43 43 H 1.09004 * 109.47003 * 59.99861 * 23 22 21 44 44 H 1.08992 * 109.47350 * 179.97438 * 23 22 21 45 45 H 1.09001 * 109.47123 * 300.00573 * 23 22 21 46 46 H 1.07998 * 120.01958 * 180.02562 * 25 21 20 47 47 H 1.08009 * 119.98261 * 180.02562 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.2964 1.5392 0.8678 5 6 0.9583 2.3659 0.5638 6 7 2.3614 1.8468 -1.3710 7 6 1.4434 2.7146 -2.1129 8 6 0.5178 1.8689 -2.9489 9 1 0.5527 0.7922 -2.8718 10 6 -0.3736 2.4695 -3.8125 11 7 -0.4158 3.7806 -3.9069 12 14 -1.5204 1.4211 -4.8493 13 1 -1.2758 -0.0147 -4.5599 14 1 -2.9295 1.7582 -4.5235 15 1 -1.2680 1.6864 -6.2885 16 6 3.5014 1.4204 -1.9497 17 8 4.1159 2.1563 -2.6965 18 6 4.0051 0.0553 -1.6756 19 6 3.7425 -0.5511 -0.4462 20 6 4.2148 -1.8194 -0.1881 21 6 4.9484 -2.5030 -1.1623 22 6 5.4491 -3.8623 -0.8898 23 6 6.2403 -4.5985 -1.9400 24 8 5.2245 -4.3880 0.1792 25 6 5.2065 -1.8966 -2.3952 26 6 4.7371 -0.6263 -2.6490 27 1 -0.3633 0.5679 0.8566 28 1 -0.3633 0.4579 -0.9200 29 1 -0.3634 -1.0257 0.0635 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 3.3343 2.5188 1.3443 33 1 3.2697 0.7637 1.6334 34 1 4.1801 1.4040 0.2442 35 1 0.0520 2.2713 -0.0342 36 1 0.7438 2.0867 1.5954 37 1 1.3086 3.3976 0.5320 38 1 0.8580 3.3088 -1.4111 39 1 2.0151 3.3779 -2.7619 40 1 -1.0431 4.2033 -4.5140 41 1 3.1725 -0.0243 0.3046 42 1 4.0146 -2.2870 0.7645 43 1 7.1386 -4.0307 -2.1827 44 1 6.5231 -5.5802 -1.5602 45 1 5.6321 -4.7168 -2.8367 46 1 5.7727 -2.4238 -3.1487 47 1 4.9360 -0.1577 -3.6016 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189938088.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:39 Heat of formation + Delta-G solvation = 28.253668 kcal Electronic energy + Delta-G solvation = -28160.000916 eV Core-core repulsion = 24504.306367 eV Total energy + Delta-G solvation = -3655.694549 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.29472 -39.62946 -37.59713 -37.37870 -33.62642 -32.23992 -32.07723 -30.99318 -30.19025 -29.69319 -27.63843 -26.73094 -24.72636 -23.64303 -22.47412 -22.21296 -20.77221 -19.98834 -18.12084 -17.10016 -16.55116 -16.23751 -15.95367 -15.23539 -15.16839 -15.10429 -15.03224 -14.44300 -14.34763 -14.16067 -13.81825 -13.59101 -12.94177 -12.76216 -12.64846 -12.48099 -12.44325 -12.31611 -12.27210 -11.92933 -11.62109 -11.53730 -11.21445 -11.17589 -11.10166 -10.78408 -10.67964 -10.47281 -10.33507 -10.10910 -10.09523 -9.76589 -9.60282 -9.21936 -8.91472 -8.62380 -8.48224 -7.57555 -6.10097 -4.15842 0.44907 1.43458 2.16442 3.17820 3.23996 3.32816 3.35867 3.72200 3.90643 3.97312 4.37542 4.68003 4.77530 4.89142 4.91229 4.96676 5.05942 5.12150 5.16396 5.21199 5.23675 5.44795 5.47851 5.59731 5.59989 5.70394 5.73194 5.80508 5.95592 5.98024 6.05712 6.08870 6.11207 6.21519 6.25855 6.37067 6.42132 6.48028 6.63598 6.67440 6.84797 6.89421 7.09103 7.35715 7.41819 7.57459 7.88541 8.17765 8.34184 8.71550 8.93886 9.49685 10.96901 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013804 B = 0.004506 C = 0.004158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.977636 B = 6212.977028 C = 6732.963704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.143 4.143 3 C 0.166 3.834 4 C -0.180 4.180 5 C -0.150 4.150 6 N -0.606 5.606 7 C 0.242 3.758 8 C -0.529 4.529 9 H 0.061 0.939 10 C 0.064 3.936 11 N -0.890 5.890 12 Si 0.892 3.108 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.283 1.283 16 C 0.571 3.429 17 O -0.524 6.524 18 C -0.099 4.099 19 C -0.148 4.148 20 C -0.086 4.086 21 C -0.161 4.161 22 C 0.396 3.604 23 C -0.201 4.201 24 O -0.462 6.462 25 C -0.091 4.091 26 C -0.080 4.080 27 H 0.055 0.945 28 H 0.083 0.917 29 H 0.042 0.958 30 H 0.083 0.917 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.043 0.957 39 H 0.042 0.958 40 H 0.263 0.737 41 H 0.201 0.799 42 H 0.132 0.868 43 H 0.094 0.906 44 H 0.083 0.917 45 H 0.094 0.906 46 H 0.133 0.867 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.492 -11.006 8.203 16.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.181 4.181 3 C 0.080 3.920 4 C -0.237 4.237 5 C -0.207 4.207 6 N -0.339 5.339 7 C 0.124 3.876 8 C -0.568 4.568 9 H 0.079 0.921 10 C -0.138 4.138 11 N -0.529 5.529 12 Si 0.719 3.281 13 H -0.197 1.197 14 H -0.209 1.209 15 H -0.209 1.209 16 C 0.359 3.641 17 O -0.401 6.401 18 C -0.103 4.103 19 C -0.164 4.164 20 C -0.104 4.104 21 C -0.163 4.163 22 C 0.275 3.725 23 C -0.258 4.258 24 O -0.338 6.338 25 C -0.109 4.109 26 C -0.098 4.098 27 H 0.074 0.926 28 H 0.102 0.898 29 H 0.061 0.939 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.217 0.783 42 H 0.150 0.850 43 H 0.112 0.888 44 H 0.102 0.898 45 H 0.113 0.887 46 H 0.151 0.849 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 8.587 -10.696 8.251 16.007 hybrid contribution -0.713 -0.642 -0.926 1.334 sum 7.874 -11.337 7.324 15.626 Atomic orbital electron populations 1.22147 0.95280 1.00803 1.03891 1.22837 0.97280 0.96188 1.01765 1.20460 0.94373 0.94484 0.82684 1.22898 0.98060 1.02573 1.00133 1.22255 0.99684 0.98580 1.00164 1.47975 1.21124 1.51836 1.12975 1.19437 0.87395 0.89497 0.91298 1.21543 1.18819 0.93506 1.22924 0.92128 1.24918 0.97376 0.94900 0.96651 1.69941 1.36925 1.08418 1.37617 0.86542 0.80564 0.80600 0.80360 1.19744 1.20905 1.20926 1.18030 0.80681 0.85400 0.79972 1.90697 1.55106 1.55824 1.38437 1.20759 0.98227 0.96174 0.95162 1.24061 0.97113 0.95909 0.99353 1.21309 0.95945 0.94263 0.98910 1.20587 1.03191 0.96356 0.96128 1.22620 0.76526 0.86009 0.87386 1.22257 1.01639 1.01864 1.00015 1.90511 1.49361 1.67927 1.25976 1.21284 0.98996 0.94851 0.95761 1.21234 0.95123 0.93983 0.99496 0.92566 0.89783 0.93928 0.89883 0.91812 0.91525 0.90931 0.91304 0.89379 0.92170 0.92242 0.93891 0.93981 0.92730 0.78306 0.84974 0.88755 0.89847 0.88704 0.84932 0.84561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 8.60 37.16 0.32 -2.15 16 2 C -0.14 -2.10 3.92 -26.74 -0.10 -2.21 16 3 C 0.17 2.63 0.90 -131.82 -0.12 2.51 16 4 C -0.18 -2.37 7.63 37.16 0.28 -2.08 16 5 C -0.15 -2.27 5.59 37.16 0.21 -2.06 16 6 N -0.61 -12.33 2.36 -161.20 -0.38 -12.71 16 7 C 0.24 5.95 4.86 -5.20 -0.03 5.92 16 8 C -0.53 -13.86 8.38 -34.44 -0.29 -14.15 16 9 H 0.06 1.59 7.29 -52.49 -0.38 1.20 16 10 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 11 N -0.89 -25.31 13.29 55.43 0.74 -24.57 16 12 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 13 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 C 0.57 11.94 5.74 -12.23 -0.07 11.87 16 17 O -0.52 -12.75 16.68 5.34 0.09 -12.66 16 18 C -0.10 -1.69 4.88 -104.87 -0.51 -2.21 16 19 C -0.15 -2.13 4.40 -39.25 -0.17 -2.30 16 20 C -0.09 -1.14 9.58 -39.16 -0.38 -1.52 16 21 C -0.16 -2.03 5.87 -105.00 -0.62 -2.64 16 22 C 0.40 4.57 7.23 -30.58 -0.22 4.35 16 23 C -0.20 -1.49 8.93 36.01 0.32 -1.17 16 24 O -0.46 -6.71 17.07 5.61 0.10 -6.61 16 25 C -0.09 -1.09 9.46 -39.17 -0.37 -1.46 16 26 C -0.08 -1.21 9.58 -39.25 -0.38 -1.58 16 27 H 0.06 0.74 6.23 -51.93 -0.32 0.42 16 28 H 0.08 1.55 6.16 -51.93 -0.32 1.23 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 1.39 5.08 -51.93 -0.26 1.13 16 31 H 0.06 0.76 6.37 -51.93 -0.33 0.43 16 32 H 0.07 0.82 7.80 -51.93 -0.40 0.42 16 33 H 0.07 0.75 6.75 -51.93 -0.35 0.40 16 34 H 0.07 1.01 4.82 -51.93 -0.25 0.76 16 35 H 0.09 1.53 5.42 -51.93 -0.28 1.24 16 36 H 0.06 0.72 7.66 -51.93 -0.40 0.32 16 37 H 0.06 0.93 7.68 -51.93 -0.40 0.53 16 38 H 0.04 1.05 5.43 -51.93 -0.28 0.76 16 39 H 0.04 1.20 7.49 -51.93 -0.39 0.81 16 40 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.20 2.66 0.39 -114.09 -0.04 2.62 16 42 H 0.13 1.61 7.64 -52.49 -0.40 1.21 16 43 H 0.09 0.54 8.08 -51.93 -0.42 0.12 16 44 H 0.08 0.59 8.12 -51.93 -0.42 0.17 16 45 H 0.09 0.58 8.08 -51.93 -0.42 0.16 16 46 H 0.13 1.12 7.03 -52.49 -0.37 0.76 16 47 H 0.14 2.07 7.92 -52.48 -0.42 1.66 16 LS Contribution 359.13 15.07 5.41 5.41 Total: -1.00 -31.89 359.13 -7.71 -39.60 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -6.42 Total: 4.90 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -2.22 Total: -9.25 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: 0.36 Total: -37.28 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: 0.18 Total: -19.28 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.89 -7.71 -39.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189938088.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.850 kcal (2) G-P(sol) polarization free energy of solvation -31.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds