Wall clock time and date at job start Tue Mar 31 2020 11:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47473 * 2 1 4 4 C 1.52998 * 109.47656 * 143.01144 * 3 2 1 5 5 C 1.53003 * 109.47176 * 23.00825 * 3 2 1 6 6 N 1.46509 * 109.47293 * 263.00985 * 3 2 1 7 7 C 1.46498 * 119.99845 * 102.94459 * 6 3 2 8 8 C 1.50698 * 109.47145 * 265.58281 * 7 6 3 9 9 H 1.08000 * 120.00037 * 4.76496 * 8 7 6 10 10 C 1.37878 * 120.00198 * 184.76662 * 8 7 6 11 11 N 1.31516 * 119.99880 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 120.00145 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47417 * 0.02562 * 12 10 8 14 14 H 1.48505 * 109.47250 * 120.00238 * 12 10 8 15 15 H 1.48506 * 109.47048 * 239.99923 * 12 10 8 16 16 C 1.34771 * 119.99825 * 282.94988 * 6 3 2 17 17 O 1.21525 * 119.99713 * 216.47374 * 16 6 3 18 18 C 1.48063 * 120.00081 * 36.47133 * 16 6 3 19 19 C 1.39573 * 119.97522 * 330.00152 * 18 16 6 20 20 C 1.37775 * 120.02894 * 180.23272 * 19 18 16 21 21 C 1.39806 * 119.96963 * 359.49740 * 20 19 18 22 22 C 1.47397 * 120.02602 * 180.27433 * 21 20 19 23 23 C 1.50701 * 120.00024 * 180.02562 * 22 21 20 24 24 O 1.21221 * 119.99979 * 0.02562 * 22 21 20 25 25 C 1.39803 * 119.94762 * 0.25872 * 21 20 19 26 26 C 1.37775 * 119.96803 * 359.97438 * 25 21 20 27 27 H 1.09000 * 109.46664 * 303.54257 * 1 2 3 28 28 H 1.08998 * 109.47221 * 63.53858 * 1 2 3 29 29 H 1.09003 * 109.47342 * 183.54377 * 1 2 3 30 30 H 1.09002 * 109.47326 * 239.99595 * 2 1 3 31 31 H 1.09003 * 109.47009 * 120.00333 * 2 1 3 32 32 H 1.08995 * 109.47464 * 212.72553 * 4 3 2 33 33 H 1.09001 * 109.46892 * 332.72111 * 4 3 2 34 34 H 1.09004 * 109.47381 * 92.72091 * 4 3 2 35 35 H 1.08997 * 109.47002 * 301.93490 * 5 3 2 36 36 H 1.09002 * 109.46878 * 61.93561 * 5 3 2 37 37 H 1.08999 * 109.46943 * 181.93087 * 5 3 2 38 38 H 1.09001 * 109.47341 * 25.57901 * 7 6 3 39 39 H 1.08995 * 109.47217 * 145.58134 * 7 6 3 40 40 H 0.96997 * 120.00358 * 180.02562 * 11 10 8 41 41 H 1.07993 * 119.98408 * 359.97438 * 19 18 16 42 42 H 1.07994 * 120.01608 * 179.77735 * 20 19 18 43 43 H 1.09004 * 109.47003 * 59.99861 * 23 22 21 44 44 H 1.08992 * 109.47350 * 179.97438 * 23 22 21 45 45 H 1.09001 * 109.47123 * 300.00573 * 23 22 21 46 46 H 1.07998 * 120.01958 * 180.02562 * 25 21 20 47 47 H 1.08009 * 119.98261 * 180.02562 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.2964 1.5392 0.8678 5 6 0.9583 2.3659 0.5638 6 7 2.3614 1.8468 -1.3710 7 6 1.4434 2.7146 -2.1129 8 6 0.5178 1.8689 -2.9489 9 1 0.5527 0.7922 -2.8718 10 6 -0.3736 2.4695 -3.8125 11 7 -0.4158 3.7806 -3.9069 12 14 -1.5204 1.4211 -4.8493 13 1 -1.2758 -0.0147 -4.5599 14 1 -2.9295 1.7582 -4.5235 15 1 -1.2680 1.6864 -6.2885 16 6 3.5014 1.4204 -1.9497 17 8 4.1159 2.1563 -2.6965 18 6 4.0051 0.0553 -1.6756 19 6 3.7425 -0.5511 -0.4462 20 6 4.2148 -1.8194 -0.1881 21 6 4.9484 -2.5030 -1.1623 22 6 5.4491 -3.8623 -0.8898 23 6 6.2403 -4.5985 -1.9400 24 8 5.2245 -4.3880 0.1792 25 6 5.2065 -1.8966 -2.3952 26 6 4.7371 -0.6263 -2.6490 27 1 -0.3633 0.5679 0.8566 28 1 -0.3633 0.4579 -0.9200 29 1 -0.3634 -1.0257 0.0635 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 3.3343 2.5188 1.3443 33 1 3.2697 0.7637 1.6334 34 1 4.1801 1.4040 0.2442 35 1 0.0520 2.2713 -0.0342 36 1 0.7438 2.0867 1.5954 37 1 1.3086 3.3976 0.5320 38 1 0.8580 3.3088 -1.4111 39 1 2.0151 3.3779 -2.7619 40 1 -1.0431 4.2033 -4.5140 41 1 3.1725 -0.0243 0.3046 42 1 4.0146 -2.2870 0.7645 43 1 7.1386 -4.0307 -2.1827 44 1 6.5231 -5.5802 -1.5602 45 1 5.6321 -4.7168 -2.8367 46 1 5.7727 -2.4238 -3.1487 47 1 4.9360 -0.1577 -3.6016 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189938088.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:38 Heat of formation + Delta-G solvation = 9.640281 kcal Electronic energy + Delta-G solvation = -28160.808053 eV Core-core repulsion = 24504.306367 eV Total energy + Delta-G solvation = -3656.501686 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.60165 -40.65399 -38.93698 -38.73997 -35.47284 -33.83580 -33.36934 -32.10153 -31.34093 -30.70233 -29.10345 -28.22732 -26.05792 -24.94192 -24.09563 -23.33619 -22.15201 -21.02772 -19.43875 -18.60026 -18.27607 -17.48242 -17.34150 -16.61977 -16.54715 -16.22417 -16.06292 -15.99303 -15.55510 -15.48231 -15.03498 -14.76713 -14.45355 -14.13450 -13.85241 -13.75101 -13.62936 -13.44364 -13.22987 -13.04992 -12.97206 -12.93761 -12.74467 -12.64914 -12.37962 -12.34386 -12.21626 -11.99520 -11.84483 -11.55872 -11.51993 -11.17051 -10.91636 -10.68741 -10.59725 -10.06765 -9.72124 -9.26032 -8.18618 -6.32422 -0.64243 0.37281 1.09791 1.35748 1.37835 1.48754 1.78359 2.23385 2.41038 2.80576 3.04267 3.10639 3.51869 3.62333 3.74061 3.86681 3.89782 4.03482 4.20148 4.32435 4.34379 4.44381 4.50463 4.58019 4.64451 4.69751 4.69927 4.76425 4.82166 4.88768 4.93672 5.02637 5.07767 5.11302 5.14777 5.20172 5.22505 5.27213 5.32137 5.38341 5.39685 5.48851 5.63706 5.66688 5.77882 5.95054 6.11968 6.48800 6.69928 6.80397 7.14139 7.38812 8.87588 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013804 B = 0.004506 C = 0.004158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.977636 B = 6212.977028 C = 6732.963704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.139 4.139 3 C 0.155 3.845 4 C -0.177 4.177 5 C -0.147 4.147 6 N -0.610 5.610 7 C 0.259 3.741 8 C -0.528 4.528 9 H 0.058 0.942 10 C 0.012 3.988 11 N -0.927 5.927 12 Si 0.957 3.043 13 H -0.266 1.266 14 H -0.273 1.273 15 H -0.284 1.284 16 C 0.563 3.437 17 O -0.579 6.579 18 C -0.126 4.126 19 C -0.138 4.138 20 C -0.089 4.089 21 C -0.160 4.160 22 C 0.400 3.600 23 C -0.197 4.197 24 O -0.494 6.494 25 C -0.073 4.073 26 C -0.096 4.096 27 H 0.075 0.925 28 H 0.042 0.958 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.105 0.895 32 H 0.073 0.927 33 H 0.113 0.887 34 H 0.052 0.948 35 H 0.061 0.939 36 H 0.102 0.898 37 H 0.045 0.955 38 H 0.041 0.959 39 H -0.011 1.011 40 H 0.265 0.735 41 H 0.210 0.790 42 H 0.149 0.851 43 H 0.117 0.883 44 H 0.088 0.912 45 H 0.115 0.885 46 H 0.174 0.826 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.941 -14.505 9.725 19.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.177 4.177 3 C 0.071 3.929 4 C -0.234 4.234 5 C -0.204 4.204 6 N -0.342 5.342 7 C 0.139 3.861 8 C -0.567 4.567 9 H 0.076 0.924 10 C -0.187 4.187 11 N -0.567 5.567 12 Si 0.782 3.218 13 H -0.190 1.190 14 H -0.198 1.198 15 H -0.210 1.210 16 C 0.354 3.646 17 O -0.459 6.459 18 C -0.130 4.130 19 C -0.154 4.154 20 C -0.107 4.107 21 C -0.161 4.161 22 C 0.280 3.720 23 C -0.254 4.254 24 O -0.372 6.372 25 C -0.091 4.091 26 C -0.115 4.115 27 H 0.094 0.906 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.123 0.877 32 H 0.092 0.908 33 H 0.132 0.868 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.120 0.880 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.007 0.993 40 H 0.074 0.926 41 H 0.225 0.775 42 H 0.166 0.834 43 H 0.136 0.864 44 H 0.107 0.893 45 H 0.133 0.867 46 H 0.192 0.808 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 9.033 -14.222 9.807 19.495 hybrid contribution -0.798 0.431 -1.358 1.633 sum 8.235 -13.792 8.449 18.150 Atomic orbital electron populations 1.22092 0.95520 1.01606 1.02604 1.22809 0.97006 0.95179 1.02669 1.20885 0.96077 0.95494 0.80428 1.22883 0.95668 1.04611 1.00195 1.22235 0.98174 0.97913 1.02067 1.47968 1.20334 1.51245 1.14689 1.18915 0.87025 0.89401 0.90786 1.21709 1.18679 0.93351 1.22912 0.92412 1.25739 0.99024 0.95987 0.97925 1.70064 1.37954 1.10077 1.38621 0.85525 0.78845 0.79156 0.78292 1.19022 1.19798 1.21044 1.18750 0.80256 0.86722 0.78870 1.90646 1.56905 1.57529 1.40852 1.20493 1.00808 0.94301 0.97396 1.24039 0.96866 0.96257 0.98281 1.21542 0.95666 0.93664 0.99850 1.20948 1.02176 0.97097 0.95910 1.23080 0.75921 0.85261 0.87693 1.22315 1.02074 1.01838 0.99131 1.90513 1.50756 1.68381 1.27580 1.21575 0.97810 0.93232 0.96435 1.21328 0.95739 0.95480 0.98948 0.90605 0.93903 0.92434 0.91914 0.87710 0.90777 0.86839 0.92902 0.92008 0.87969 0.93551 0.94156 0.99268 0.92608 0.77463 0.83376 0.86429 0.89288 0.86711 0.80846 0.85717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.60 8.60 71.98 0.62 -3.98 16 2 C -0.14 -3.83 3.92 30.59 0.12 -3.71 16 3 C 0.16 4.83 0.90 3.60 0.00 4.84 16 4 C -0.18 -4.34 7.63 71.98 0.55 -3.79 16 5 C -0.15 -4.38 5.59 71.98 0.40 -3.97 16 6 N -0.61 -26.04 2.36 -782.21 -1.85 -27.89 16 7 C 0.26 13.64 4.86 85.63 0.42 14.05 16 8 C -0.53 -28.95 8.38 25.60 0.21 -28.74 16 9 H 0.06 3.14 7.29 -2.91 -0.02 3.12 16 10 C 0.01 0.69 5.46 84.65 0.46 1.15 16 11 N -0.93 -54.99 13.29 21.45 0.28 -54.70 16 12 Si 0.96 43.87 29.54 68.60 2.03 45.89 16 13 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 14 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 15 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 16 C 0.56 24.88 5.74 86.85 0.50 25.38 16 17 O -0.58 -30.47 16.68 -3.80 -0.06 -30.53 16 18 C -0.13 -4.35 4.88 -20.03 -0.10 -4.45 16 19 C -0.14 -3.74 4.40 22.48 0.10 -3.65 16 20 C -0.09 -2.11 9.58 22.54 0.22 -1.90 16 21 C -0.16 -3.52 5.87 -20.11 -0.12 -3.63 16 22 C 0.40 7.78 7.23 28.10 0.20 7.99 16 23 C -0.20 -2.03 8.93 71.24 0.64 -1.40 16 24 O -0.49 -12.91 17.07 -2.85 -0.05 -12.96 16 25 C -0.07 -1.55 9.46 22.54 0.21 -1.33 16 26 C -0.10 -2.89 9.58 22.48 0.22 -2.68 16 27 H 0.08 1.82 6.23 -2.39 -0.01 1.81 16 28 H 0.04 1.58 6.16 -2.39 -0.01 1.57 16 29 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.06 2.04 5.08 -2.39 -0.01 2.03 16 31 H 0.10 2.04 6.37 -2.39 -0.02 2.03 16 32 H 0.07 1.71 7.80 -2.39 -0.02 1.69 16 33 H 0.11 1.86 6.75 -2.39 -0.02 1.84 16 34 H 0.05 1.51 4.82 -2.39 -0.01 1.50 16 35 H 0.06 2.18 5.42 -2.39 -0.01 2.17 16 36 H 0.10 2.15 7.66 -2.39 -0.02 2.13 16 37 H 0.05 1.48 7.68 -2.39 -0.02 1.46 16 38 H 0.04 2.11 5.43 -2.39 -0.01 2.10 16 39 H -0.01 -0.68 7.49 -2.39 -0.02 -0.69 16 40 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 41 H 0.21 5.04 0.39 -60.78 -0.02 5.02 16 42 H 0.15 3.05 7.64 -2.91 -0.02 3.03 16 43 H 0.12 0.73 8.08 -2.39 -0.02 0.71 16 44 H 0.09 0.89 8.12 -2.39 -0.02 0.87 16 45 H 0.11 0.80 8.08 -2.39 -0.02 0.78 16 46 H 0.17 2.18 7.03 -2.91 -0.02 2.16 16 47 H 0.12 3.96 7.92 -2.91 -0.02 3.94 16 Total: -1.00 -75.96 359.13 5.99 -69.98 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: 0.98 Total: 20.04 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: 4.65 Total: -9.82 kcal Atomic # 7 Polarization: -81.03 SS G_CDS: -1.56 Total: -82.59 kcal Atomic # 8 Polarization: -43.38 SS G_CDS: -0.11 Total: -43.49 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -75.96 5.99 -69.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189938088.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.616 kcal (2) G-P(sol) polarization free energy of solvation -75.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds