Wall clock time and date at job start Tue Mar 31 2020 11:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34762 * 117.00243 * 2 1 4 4 O 1.21515 * 119.99869 * 0.02562 * 3 2 1 5 5 C 1.47382 * 119.99863 * 179.97438 * 3 2 1 6 6 C 1.39853 * 120.22543 * 359.97438 * 5 3 2 7 7 C 1.36372 * 120.25895 * 180.15892 * 6 5 3 8 8 C 1.39771 * 120.51744 * 359.97438 * 7 6 5 9 9 C 1.39341 * 119.28576 * 359.43594 * 8 7 6 10 10 C 1.37411 * 120.56193 * 1.00497 * 9 8 7 11 11 C 1.51594 * 107.89335 * 180.59320 * 9 8 7 12 12 C 1.54611 * 102.66784 * 16.22808 * 11 9 8 13 13 N 1.39423 * 129.76865 * 179.49815 * 8 7 6 14 14 C 1.46895 * 111.00181 * 283.50096 * 13 8 7 15 15 C 1.53010 * 109.46946 * 158.13895 * 14 13 8 16 16 C 1.52996 * 109.47258 * 305.63850 * 15 14 13 17 17 C 1.52998 * 109.46855 * 65.64304 * 15 14 13 18 18 C 1.53003 * 109.46975 * 185.64063 * 15 14 13 19 19 C 1.50701 * 109.47050 * 180.02562 * 18 15 14 20 20 H 1.08003 * 119.99837 * 0.02562 * 19 18 15 21 21 C 1.37878 * 119.99932 * 179.97438 * 19 18 15 22 22 N 1.31514 * 119.99935 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99663 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47412 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47027 * 120.00556 * 23 21 19 26 26 H 1.48503 * 109.46975 * 239.99851 * 23 21 19 27 27 H 1.09001 * 109.47180 * 300.00079 * 1 2 3 28 28 H 1.09001 * 109.47178 * 59.99660 * 1 2 3 29 29 H 1.09000 * 109.47493 * 179.97438 * 1 2 3 30 30 H 1.08005 * 119.87058 * 0.17290 * 6 5 3 31 31 H 1.07999 * 119.74184 * 179.97438 * 7 6 5 32 32 H 1.07996 * 120.09428 * 179.40600 * 10 9 8 33 33 H 1.09000 * 110.98516 * 257.84683 * 11 9 8 34 34 H 1.08996 * 110.74911 * 134.49967 * 11 9 8 35 35 H 1.09006 * 110.77562 * 215.96951 * 12 11 9 36 36 H 1.08997 * 110.77529 * 92.54973 * 12 11 9 37 37 H 1.09001 * 109.47667 * 278.13774 * 14 13 8 38 38 H 1.09000 * 109.47454 * 38.14319 * 14 13 8 39 39 H 1.08998 * 109.46844 * 64.80308 * 16 15 14 40 40 H 1.08997 * 109.47217 * 184.80294 * 16 15 14 41 41 H 1.09002 * 109.47038 * 304.80789 * 16 15 14 42 42 H 1.08996 * 109.47290 * 51.99691 * 17 15 14 43 43 H 1.09004 * 109.47022 * 171.99765 * 17 15 14 44 44 H 1.09003 * 109.47243 * 291.99591 * 17 15 14 45 45 H 1.09001 * 109.47208 * 300.00126 * 18 15 14 46 46 H 1.09004 * 109.47197 * 59.99814 * 18 15 14 47 47 H 0.97001 * 119.99926 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4020 2.2198 0.0005 5 6 3.5356 1.2778 0.0006 6 6 4.3018 0.1078 0.0017 7 6 5.6637 0.1783 0.0055 8 6 6.3103 1.4175 0.0078 9 6 5.5482 2.5839 -0.0058 10 6 4.1755 2.5218 -0.0006 11 6 6.5012 3.7628 -0.0147 12 6 7.8419 3.1119 -0.4261 13 7 7.6729 1.7124 0.0210 14 6 8.2411 1.5157 1.3613 15 6 9.7529 1.3088 1.2489 16 6 10.0400 0.1627 0.2769 17 6 10.4063 2.5920 0.7318 18 6 10.3243 0.9647 2.6259 19 6 11.8135 0.7615 2.5154 20 1 12.3034 0.8675 1.5587 21 6 12.5506 0.4411 3.6357 22 7 11.9540 0.3125 4.8007 23 14 14.3965 0.1899 3.4987 24 1 14.8202 0.3908 2.0898 25 1 15.0952 1.1689 4.3697 26 1 14.7416 -1.1891 3.9281 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.8130 -0.8553 -0.0008 31 1 6.2472 -0.7305 0.0067 32 1 3.5923 3.4308 -0.0015 33 1 6.5772 4.2108 0.9761 34 1 6.1904 4.5051 -0.7498 35 1 8.6764 3.5851 0.0916 36 1 7.9791 3.1588 -1.5064 37 1 8.0392 2.3943 1.9741 38 1 7.7877 0.6387 1.8231 39 1 9.7091 0.4430 -0.7231 40 1 11.1106 -0.0412 0.2615 41 1 9.5045 -0.7302 0.5997 42 1 10.0860 3.4350 1.3440 43 1 11.4906 2.4948 0.7858 44 1 10.1077 2.7602 -0.3030 45 1 10.1198 1.7812 3.3185 46 1 9.8588 0.0505 2.9944 47 1 12.4725 0.0868 5.5888 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191507909.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:12 Heat of formation + Delta-G solvation = -50.385555 kcal Electronic energy + Delta-G solvation = -26551.352222 eV Core-core repulsion = 22892.247621 eV Total energy + Delta-G solvation = -3659.104602 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.17578 -40.34594 -37.68676 -36.58114 -35.63070 -32.63226 -32.01360 -30.25991 -29.22546 -27.88759 -26.97490 -26.44728 -25.86064 -23.85665 -22.90844 -22.33974 -21.00101 -20.58546 -18.14466 -17.76961 -17.20585 -16.56121 -16.52540 -16.18365 -15.91023 -15.08378 -14.56396 -14.47506 -14.15701 -13.85362 -13.66229 -13.57002 -13.40292 -13.02590 -12.75222 -12.68102 -12.45659 -12.33721 -12.16782 -12.06290 -11.92823 -11.17645 -11.05786 -11.04213 -10.97554 -10.79450 -10.73696 -10.68664 -10.52805 -10.47743 -10.08440 -9.72102 -9.57285 -9.08337 -9.04833 -8.81542 -8.35805 -7.88729 -6.00099 -4.00401 0.54176 1.26670 2.36326 2.48079 3.30106 3.38371 3.41303 3.56165 3.72981 4.43334 4.47122 4.56832 4.70609 4.83034 4.87207 4.90827 5.01271 5.10358 5.17225 5.22938 5.35870 5.44403 5.49897 5.59758 5.65739 5.73496 5.81371 5.89585 5.93029 6.03621 6.11576 6.13546 6.16764 6.23552 6.30318 6.40161 6.53408 6.61012 6.67614 6.78023 6.96817 7.14875 7.19417 7.25750 7.32469 7.55989 7.65106 7.78358 7.99589 8.43064 9.04863 9.62672 11.11521 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.024438 B = 0.002619 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.493429 B =10688.501910 C =11243.815945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.515 3.485 4 O -0.515 6.515 5 C -0.161 4.161 6 C -0.040 4.040 7 C -0.132 4.132 8 C 0.152 3.848 9 C -0.163 4.163 10 C -0.018 4.018 11 C -0.108 4.108 12 C 0.034 3.966 13 N -0.487 5.487 14 C 0.070 3.930 15 C -0.054 4.054 16 C -0.116 4.116 17 C -0.138 4.138 18 C 0.033 3.967 19 C -0.507 4.507 20 H 0.061 0.939 21 C 0.055 3.945 22 N -0.897 5.897 23 Si 0.888 3.112 24 H -0.273 1.273 25 H -0.286 1.286 26 H -0.285 1.285 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.102 0.898 30 H 0.140 0.860 31 H 0.135 0.865 32 H 0.133 0.867 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.109 0.891 36 H 0.086 0.914 37 H 0.045 0.955 38 H 0.072 0.928 39 H 0.042 0.958 40 H 0.058 0.942 41 H 0.038 0.962 42 H 0.040 0.960 43 H 0.068 0.932 44 H 0.043 0.957 45 H 0.013 0.987 46 H 0.015 0.985 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.922 2.200 -11.231 21.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.362 3.638 4 O -0.404 6.404 5 C -0.163 4.163 6 C -0.059 4.059 7 C -0.152 4.152 8 C 0.053 3.947 9 C -0.166 4.166 10 C -0.037 4.037 11 C -0.146 4.146 12 C -0.093 4.093 13 N -0.201 5.201 14 C -0.054 4.054 15 C -0.055 4.055 16 C -0.174 4.174 17 C -0.195 4.195 18 C -0.004 4.004 19 C -0.545 4.545 20 H 0.079 0.921 21 C -0.146 4.146 22 N -0.536 5.536 23 Si 0.716 3.284 24 H -0.198 1.198 25 H -0.212 1.212 26 H -0.211 1.211 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.120 0.880 30 H 0.157 0.843 31 H 0.153 0.847 32 H 0.150 0.850 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.127 0.873 36 H 0.104 0.896 37 H 0.063 0.937 38 H 0.091 0.909 39 H 0.061 0.939 40 H 0.077 0.923 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.087 0.913 44 H 0.062 0.938 45 H 0.032 0.968 46 H 0.034 0.966 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -17.748 2.109 -11.363 21.179 hybrid contribution 0.338 0.335 0.598 0.765 sum -17.409 2.444 -10.764 20.614 Atomic orbital electron populations 1.23263 0.76118 1.03709 1.02568 1.86557 1.23439 1.32765 1.84482 1.21097 0.89086 0.81286 0.72355 1.90826 1.66928 1.36036 1.46648 1.18788 0.88644 0.94722 1.14098 1.20909 0.93130 0.97874 0.93970 1.20278 0.93813 0.96595 1.04555 1.20097 0.89462 0.93562 0.91601 1.20970 0.93549 0.96248 1.05785 1.20348 0.92696 0.96655 0.93990 1.21719 0.93970 0.95996 1.02913 1.23695 0.97465 0.86089 1.02031 1.59834 1.10140 1.23314 1.26855 1.22536 0.97218 1.00888 0.84749 1.20629 0.90136 0.95419 0.99269 1.21605 1.01504 0.96914 0.97357 1.22053 1.02494 0.96574 0.98345 1.19130 0.95655 0.96516 0.89139 1.21241 0.92573 1.46494 0.94171 0.92137 1.25017 0.98242 0.95793 0.95544 1.69974 1.35498 1.49058 0.99106 0.86605 0.86058 0.77693 0.78064 1.19754 1.21189 1.21144 0.91857 0.91912 0.87986 0.84260 0.84709 0.84955 0.89838 0.89650 0.87257 0.89582 0.93708 0.90918 0.93917 0.92267 0.94325 0.94118 0.91320 0.93793 0.96830 0.96617 0.93172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.57 101.05 1.07 1.34 16 2 O -0.36 -3.78 9.81 -40.66 -0.40 -4.17 16 3 C 0.52 6.48 7.89 34.45 0.27 6.76 16 4 O -0.51 -7.53 16.14 -19.28 -0.31 -7.84 16 5 C -0.16 -1.98 5.88 -104.95 -0.62 -2.60 16 6 C -0.04 -0.45 9.54 -39.65 -0.38 -0.83 16 7 C -0.13 -1.63 9.94 -39.68 -0.39 -2.03 16 8 C 0.15 2.05 5.44 -83.42 -0.45 1.60 16 9 C -0.16 -2.05 6.22 -104.07 -0.65 -2.69 16 10 C -0.02 -0.22 9.59 -39.26 -0.38 -0.60 16 11 C -0.11 -1.18 6.94 -26.60 -0.18 -1.37 16 12 C 0.03 0.40 5.51 -2.43 -0.01 0.39 16 13 N -0.49 -6.90 4.02 -168.99 -0.68 -7.58 16 14 C 0.07 1.14 4.02 -3.82 -0.02 1.13 16 15 C -0.05 -1.01 0.61 -154.50 -0.09 -1.11 16 16 C -0.12 -2.14 7.99 37.16 0.30 -1.85 16 17 C -0.14 -2.38 6.75 37.16 0.25 -2.13 16 18 C 0.03 0.80 4.04 -27.88 -0.11 0.69 16 19 C -0.51 -13.38 7.48 -34.44 -0.26 -13.64 16 20 H 0.06 1.56 5.73 -52.48 -0.30 1.26 16 21 C 0.05 1.51 5.46 -17.82 -0.10 1.42 16 22 N -0.90 -26.28 13.29 55.43 0.74 -25.54 16 23 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 24 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 26 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.14 1.28 7.60 -52.48 -0.40 0.88 16 31 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 32 H 0.13 1.55 7.66 -52.49 -0.40 1.14 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.11 1.33 4.43 -51.93 -0.23 1.10 16 36 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.04 0.73 7.85 -51.93 -0.41 0.32 16 38 H 0.07 1.24 7.84 -51.93 -0.41 0.83 16 39 H 0.04 0.71 7.63 -51.93 -0.40 0.32 16 40 H 0.06 1.18 6.48 -51.93 -0.34 0.85 16 41 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.04 0.67 7.51 -51.93 -0.39 0.28 16 43 H 0.07 1.33 6.39 -51.93 -0.33 0.99 16 44 H 0.04 0.65 6.03 -51.93 -0.31 0.34 16 45 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 372.75 15.07 5.62 5.62 Total: -1.00 -30.60 372.75 -9.09 -39.68 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -7.28 Total: -0.78 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: -1.75 Total: -15.52 kcal Atomic # 7 Polarization: -33.17 SS G_CDS: 0.06 Total: -33.12 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: -0.71 Total: -12.02 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.60 -9.09 -39.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191507909.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.702 kcal (2) G-P(sol) polarization free energy of solvation -30.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds