Wall clock time and date at job start Tue Mar 31 2020 11:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34762 * 117.00243 * 2 1 4 4 O 1.21515 * 119.99869 * 0.02562 * 3 2 1 5 5 C 1.47382 * 119.99863 * 179.97438 * 3 2 1 6 6 C 1.39853 * 120.22543 * 359.97438 * 5 3 2 7 7 C 1.36372 * 120.25895 * 180.15892 * 6 5 3 8 8 C 1.39771 * 120.51744 * 359.97438 * 7 6 5 9 9 C 1.39341 * 119.28576 * 359.43594 * 8 7 6 10 10 C 1.37411 * 120.56193 * 1.00497 * 9 8 7 11 11 C 1.51594 * 107.89335 * 180.59320 * 9 8 7 12 12 C 1.54611 * 102.66784 * 16.22808 * 11 9 8 13 13 N 1.39423 * 129.76865 * 179.49815 * 8 7 6 14 14 C 1.46895 * 111.00181 * 283.50096 * 13 8 7 15 15 C 1.53010 * 109.46946 * 158.13895 * 14 13 8 16 16 C 1.52996 * 109.47258 * 305.63850 * 15 14 13 17 17 C 1.52998 * 109.46855 * 65.64304 * 15 14 13 18 18 C 1.53003 * 109.46975 * 185.64063 * 15 14 13 19 19 C 1.50701 * 109.47050 * 180.02562 * 18 15 14 20 20 H 1.08003 * 119.99837 * 0.02562 * 19 18 15 21 21 C 1.37878 * 119.99932 * 179.97438 * 19 18 15 22 22 N 1.31514 * 119.99935 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99663 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47412 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47027 * 120.00556 * 23 21 19 26 26 H 1.48503 * 109.46975 * 239.99851 * 23 21 19 27 27 H 1.09001 * 109.47180 * 300.00079 * 1 2 3 28 28 H 1.09001 * 109.47178 * 59.99660 * 1 2 3 29 29 H 1.09000 * 109.47493 * 179.97438 * 1 2 3 30 30 H 1.08005 * 119.87058 * 0.17290 * 6 5 3 31 31 H 1.07999 * 119.74184 * 179.97438 * 7 6 5 32 32 H 1.07996 * 120.09428 * 179.40600 * 10 9 8 33 33 H 1.09000 * 110.98516 * 257.84683 * 11 9 8 34 34 H 1.08996 * 110.74911 * 134.49967 * 11 9 8 35 35 H 1.09006 * 110.77562 * 215.96951 * 12 11 9 36 36 H 1.08997 * 110.77529 * 92.54973 * 12 11 9 37 37 H 1.09001 * 109.47667 * 278.13774 * 14 13 8 38 38 H 1.09000 * 109.47454 * 38.14319 * 14 13 8 39 39 H 1.08998 * 109.46844 * 64.80308 * 16 15 14 40 40 H 1.08997 * 109.47217 * 184.80294 * 16 15 14 41 41 H 1.09002 * 109.47038 * 304.80789 * 16 15 14 42 42 H 1.08996 * 109.47290 * 51.99691 * 17 15 14 43 43 H 1.09004 * 109.47022 * 171.99765 * 17 15 14 44 44 H 1.09003 * 109.47243 * 291.99591 * 17 15 14 45 45 H 1.09001 * 109.47208 * 300.00126 * 18 15 14 46 46 H 1.09004 * 109.47197 * 59.99814 * 18 15 14 47 47 H 0.97001 * 119.99926 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4020 2.2198 0.0005 5 6 3.5356 1.2778 0.0006 6 6 4.3018 0.1078 0.0017 7 6 5.6637 0.1783 0.0055 8 6 6.3103 1.4175 0.0078 9 6 5.5482 2.5839 -0.0058 10 6 4.1755 2.5218 -0.0006 11 6 6.5012 3.7628 -0.0147 12 6 7.8419 3.1119 -0.4261 13 7 7.6729 1.7124 0.0210 14 6 8.2411 1.5157 1.3613 15 6 9.7529 1.3088 1.2489 16 6 10.0400 0.1627 0.2769 17 6 10.4063 2.5920 0.7318 18 6 10.3243 0.9647 2.6259 19 6 11.8135 0.7615 2.5154 20 1 12.3034 0.8675 1.5587 21 6 12.5506 0.4411 3.6357 22 7 11.9540 0.3125 4.8007 23 14 14.3965 0.1899 3.4987 24 1 14.8202 0.3908 2.0898 25 1 15.0952 1.1689 4.3697 26 1 14.7416 -1.1891 3.9281 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.8130 -0.8553 -0.0008 31 1 6.2472 -0.7305 0.0067 32 1 3.5923 3.4308 -0.0015 33 1 6.5772 4.2108 0.9761 34 1 6.1904 4.5051 -0.7498 35 1 8.6764 3.5851 0.0916 36 1 7.9791 3.1588 -1.5064 37 1 8.0392 2.3943 1.9741 38 1 7.7877 0.6387 1.8231 39 1 9.7091 0.4430 -0.7231 40 1 11.1106 -0.0412 0.2615 41 1 9.5045 -0.7302 0.5997 42 1 10.0860 3.4350 1.3440 43 1 11.4906 2.4948 0.7858 44 1 10.1077 2.7602 -0.3030 45 1 10.1198 1.7812 3.3185 46 1 9.8588 0.0505 2.9944 47 1 12.4725 0.0868 5.5888 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191507909.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:11 Heat of formation + Delta-G solvation = -65.639970 kcal Electronic energy + Delta-G solvation = -26552.013703 eV Core-core repulsion = 22892.247621 eV Total energy + Delta-G solvation = -3659.766083 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.17161 -41.29929 -38.90803 -37.54968 -36.90254 -34.47854 -33.17016 -31.31427 -30.21531 -29.08741 -28.40949 -27.83884 -27.16624 -25.05434 -24.48275 -23.31776 -22.02484 -21.54034 -19.64401 -18.74285 -18.33355 -18.07799 -17.54909 -17.39385 -16.93838 -16.43698 -16.07375 -15.43308 -15.27401 -15.18962 -14.83933 -14.65902 -14.47225 -14.23598 -13.99439 -13.85280 -13.75735 -13.59405 -13.32066 -13.14321 -12.99420 -12.84974 -12.60499 -12.38977 -12.28185 -12.17830 -12.01999 -11.91948 -11.82973 -11.72619 -11.66422 -11.31147 -10.96358 -10.85037 -10.49358 -10.34973 -9.97223 -8.94043 -8.12604 -6.18863 -0.43959 0.33564 1.38931 1.41326 1.43143 1.54545 1.66606 2.44276 2.57101 2.75113 3.21937 3.51478 3.70369 3.77502 3.93674 4.03078 4.08367 4.17058 4.25517 4.29361 4.33760 4.36678 4.40979 4.53469 4.66598 4.70451 4.74268 4.80074 4.82937 4.91778 4.97407 5.05187 5.09801 5.13758 5.19265 5.23063 5.26480 5.30115 5.35322 5.53593 5.57198 5.58184 5.62976 5.66319 5.83640 5.94457 5.97550 6.20414 6.37976 6.63904 6.96376 7.48354 8.99853 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.024438 B = 0.002619 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.493429 B =10688.501910 C =11243.815945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.357 6.357 3 C 0.517 3.483 4 O -0.540 6.540 5 C -0.166 4.166 6 C -0.033 4.033 7 C -0.137 4.137 8 C 0.129 3.871 9 C -0.163 4.163 10 C -0.025 4.025 11 C -0.104 4.104 12 C 0.031 3.969 13 N -0.490 5.490 14 C 0.083 3.917 15 C -0.048 4.048 16 C -0.107 4.107 17 C -0.131 4.131 18 C 0.039 3.961 19 C -0.509 4.509 20 H 0.067 0.933 21 C -0.004 4.004 22 N -0.938 5.938 23 Si 0.954 3.046 24 H -0.260 1.260 25 H -0.284 1.284 26 H -0.284 1.284 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.135 0.865 30 H 0.161 0.839 31 H 0.141 0.859 32 H 0.137 0.863 33 H 0.084 0.916 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.102 0.898 37 H 0.041 0.959 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.040 0.960 41 H 0.032 0.968 42 H 0.045 0.955 43 H 0.046 0.954 44 H 0.074 0.926 45 H -0.014 1.014 46 H -0.015 1.015 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.376 2.340 -13.084 22.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.273 6.273 3 C 0.365 3.635 4 O -0.433 6.433 5 C -0.168 4.168 6 C -0.052 4.052 7 C -0.156 4.156 8 C 0.031 3.969 9 C -0.166 4.166 10 C -0.044 4.044 11 C -0.141 4.141 12 C -0.095 4.095 13 N -0.205 5.205 14 C -0.041 4.041 15 C -0.049 4.049 16 C -0.165 4.165 17 C -0.188 4.188 18 C 0.002 3.998 19 C -0.547 4.547 20 H 0.085 0.915 21 C -0.201 4.201 22 N -0.579 5.579 23 Si 0.780 3.220 24 H -0.184 1.184 25 H -0.210 1.210 26 H -0.210 1.210 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.153 0.847 30 H 0.178 0.822 31 H 0.159 0.841 32 H 0.155 0.845 33 H 0.102 0.898 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.120 0.880 37 H 0.059 0.941 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.059 0.941 41 H 0.051 0.949 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.093 0.907 45 H 0.005 0.995 46 H 0.003 0.997 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -18.213 2.241 -13.243 22.629 hybrid contribution 0.335 0.249 1.170 1.242 sum -17.878 2.490 -12.073 21.716 Atomic orbital electron populations 1.23595 0.74229 1.05940 1.02633 1.86545 1.25288 1.31575 1.83875 1.21149 0.89154 0.81489 0.71729 1.90811 1.67464 1.36954 1.48022 1.18962 0.88862 0.95151 1.13859 1.21089 0.92676 0.98505 0.92901 1.20461 0.94322 0.96618 1.04236 1.20243 0.89207 0.94378 0.93061 1.21133 0.93678 0.96640 1.05141 1.20460 0.92766 0.97021 0.94124 1.21741 0.92905 0.95855 1.03647 1.23787 0.97989 0.84899 1.02851 1.59770 1.10751 1.24885 1.25077 1.22185 0.95377 1.00209 0.86360 1.20450 0.91867 0.96511 0.96070 1.21505 1.00117 0.96497 0.98334 1.21989 1.00774 0.95733 1.00269 1.19007 0.94982 0.94003 0.91849 1.21625 0.93747 1.45095 0.94254 0.91460 1.25894 1.02989 0.95897 0.95324 1.70112 1.37292 1.50628 0.99908 0.85552 0.80477 0.77405 0.78568 1.18387 1.20965 1.21041 0.91970 0.91738 0.84713 0.82170 0.84145 0.84532 0.89798 0.87405 0.87421 0.88015 0.94067 0.92220 0.91642 0.94136 0.94917 0.93615 0.93510 0.90700 0.99550 0.99696 0.93233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.57 113.37 1.20 1.57 16 2 O -0.36 -6.96 9.81 -56.73 -0.56 -7.52 16 3 C 0.52 12.44 7.89 70.23 0.55 12.99 16 4 O -0.54 -15.44 16.14 19.79 0.32 -15.12 16 5 C -0.17 -3.89 5.88 -20.08 -0.12 -4.01 16 6 C -0.03 -0.69 9.54 22.23 0.21 -0.48 16 7 C -0.14 -3.19 9.94 22.21 0.22 -2.97 16 8 C 0.13 3.33 5.44 38.57 0.21 3.54 16 9 C -0.16 -3.85 6.22 -19.51 -0.12 -3.97 16 10 C -0.02 -0.59 9.59 22.48 0.22 -0.37 16 11 C -0.10 -2.05 6.94 30.68 0.21 -1.83 16 12 C 0.03 0.66 5.51 86.66 0.48 1.14 16 13 N -0.49 -13.12 4.02 -688.55 -2.77 -15.89 16 14 C 0.08 2.71 4.02 86.31 0.35 3.06 16 15 C -0.05 -1.81 0.61 -52.18 -0.03 -1.84 16 16 C -0.11 -3.87 7.99 71.98 0.58 -3.30 16 17 C -0.13 -4.37 6.75 71.98 0.49 -3.89 16 18 C 0.04 1.96 4.04 29.85 0.12 2.08 16 19 C -0.51 -27.32 7.48 25.60 0.19 -27.12 16 20 H 0.07 3.46 5.73 -2.91 -0.02 3.45 16 21 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 22 N -0.94 -56.46 13.29 21.45 0.28 -56.18 16 23 Si 0.95 43.71 29.54 68.60 2.03 45.73 16 24 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 25 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 26 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 27 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.16 2.60 7.60 -2.91 -0.02 2.58 16 31 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 32 H 0.14 3.05 7.66 -2.91 -0.02 3.03 16 33 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.11 2.37 4.43 -2.38 -0.01 2.36 16 36 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.04 1.35 7.85 -2.39 -0.02 1.33 16 38 H 0.06 2.07 7.84 -2.39 -0.02 2.05 16 39 H 0.06 2.06 7.63 -2.39 -0.02 2.04 16 40 H 0.04 1.59 6.48 -2.39 -0.02 1.58 16 41 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.04 1.46 7.51 -2.39 -0.02 1.44 16 43 H 0.05 1.76 6.39 -2.38 -0.02 1.75 16 44 H 0.07 2.03 6.03 -2.39 -0.01 2.02 16 45 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 46 H -0.02 -0.85 8.14 -2.38 -0.02 -0.87 16 47 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -66.77 372.75 5.48 -61.29 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: 0.96 Total: 12.88 kcal Atomic # 6 Polarization: -30.42 SS G_CDS: 5.21 Total: -25.21 kcal Atomic # 7 Polarization: -69.58 SS G_CDS: -2.49 Total: -72.07 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -0.24 Total: -22.63 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -66.77 5.48 -61.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191507909.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.345 kcal (2) G-P(sol) polarization free energy of solvation -66.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds