Wall clock time and date at job start Tue Mar 31 2020 12:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46810 * 2 1 4 4 C 1.53004 * 109.47217 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.46737 * 305.00312 * 4 3 2 6 6 C 1.52994 * 109.47247 * 184.99662 * 4 3 2 7 7 C 1.53000 * 109.47317 * 174.99893 * 6 4 3 8 8 N 1.46502 * 109.46920 * 64.99646 * 4 3 2 9 9 C 1.34779 * 120.00004 * 204.99828 * 8 4 3 10 10 O 1.21718 * 119.99908 * 0.02562 * 9 8 4 11 11 C 1.46255 * 119.99865 * 179.97438 * 9 8 4 12 12 C 1.35018 * 120.00031 * 179.97438 * 11 9 8 13 13 C 1.46960 * 120.00380 * 180.02562 * 12 11 9 14 14 C 1.40026 * 120.10267 * 180.02562 * 13 12 11 15 15 C 1.37594 * 119.89660 * 179.97438 * 14 13 12 16 16 C 1.39178 * 120.10071 * 0.27233 * 15 14 13 17 17 O 1.35579 * 119.89553 * 179.70771 * 16 15 14 18 18 C 1.34781 * 117.00320 * 354.44312 * 17 16 15 19 19 H 1.08005 * 119.99725 * 5.05569 * 18 17 16 20 20 C 1.38715 * 120.00342 * 185.05925 * 18 17 16 21 21 N 1.31515 * 119.99717 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00159 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.46917 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47200 * 119.99800 * 22 20 18 25 25 H 1.48498 * 109.46657 * 239.99839 * 22 20 18 26 26 C 1.39173 * 120.20477 * 359.44770 * 16 15 14 27 27 C 1.37597 * 120.09926 * 0.55723 * 26 16 15 28 28 H 1.08997 * 109.47168 * 300.00001 * 1 2 3 29 29 H 1.08996 * 109.47014 * 60.00846 * 1 2 3 30 30 H 1.09003 * 109.46627 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47812 * 239.99640 * 2 1 3 32 32 H 1.09000 * 109.47434 * 119.99371 * 2 1 3 33 33 H 1.08997 * 109.47256 * 60.00053 * 3 2 1 34 34 H 1.09000 * 109.47089 * 299.99274 * 3 2 1 35 35 H 1.09003 * 109.47269 * 295.00289 * 6 4 3 36 36 H 1.08997 * 109.47071 * 55.00257 * 6 4 3 37 37 H 1.09003 * 109.47147 * 59.99993 * 7 6 4 38 38 H 1.08998 * 109.47675 * 180.02562 * 7 6 4 39 39 H 1.09003 * 109.47274 * 300.00393 * 7 6 4 40 40 H 0.97004 * 120.00347 * 25.00647 * 8 4 3 41 41 H 1.08003 * 120.00046 * 0.02562 * 11 9 8 42 42 H 1.08003 * 119.99920 * 0.02562 * 12 11 9 43 43 H 1.08002 * 120.05214 * 359.95709 * 14 13 12 44 44 H 1.08001 * 119.95149 * 180.02562 * 15 14 13 45 45 H 0.96993 * 119.99812 * 180.02562 * 21 20 18 46 46 H 1.08004 * 119.95204 * 180.27325 * 26 16 15 47 47 H 1.08000 * 120.05069 * 179.74232 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4427 0.0006 5 1 3.9329 0.8533 0.8427 6 6 4.0798 2.8797 0.1263 7 6 5.6046 2.8707 0.2524 8 7 4.0588 0.8587 -1.2509 9 6 5.2809 0.2923 -1.2980 10 8 5.9781 0.2655 -0.3007 11 6 5.7687 -0.2912 -2.5473 12 6 6.9931 -0.8582 -2.5948 13 6 7.4835 -1.4440 -3.8502 14 6 8.7528 -2.0331 -3.9016 15 6 9.2075 -2.5808 -5.0790 16 6 8.4103 -2.5449 -6.2193 17 8 8.8649 -3.0805 -7.3788 18 6 10.1367 -3.5268 -7.3896 19 1 10.7176 -3.5240 -6.4791 20 6 10.6994 -3.9895 -8.5700 21 7 9.9918 -3.9932 -9.6786 22 14 12.4617 -4.6087 -8.5847 23 1 13.0356 -4.5008 -7.2195 24 1 12.4841 -6.0280 -9.0209 25 1 13.2665 -3.7888 -9.5257 26 6 7.1457 -1.9656 -6.1715 27 6 6.6827 -1.4153 -4.9984 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6767 1.9564 -0.8901 35 1 3.7918 3.4462 -0.7593 36 1 3.6448 3.3434 1.0116 37 1 6.0397 2.4069 -0.6330 38 1 5.9679 3.8944 0.3423 39 1 5.8926 2.3042 1.1379 40 1 3.5031 0.8798 -2.0456 41 1 5.1498 -0.2678 -3.4321 42 1 7.6121 -0.8813 -1.7101 43 1 9.3740 -2.0573 -3.0184 44 1 10.1862 -3.0357 -5.1196 45 1 10.3852 -4.3171 -10.5039 46 1 6.5287 -1.9439 -7.0577 47 1 5.7029 -0.9624 -4.9633 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194904516.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:36 Heat of formation + Delta-G solvation = -50.782435 kcal Electronic energy + Delta-G solvation = -25085.456907 eV Core-core repulsion = 21426.335095 eV Total energy + Delta-G solvation = -3659.121812 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.97012 -39.16144 -37.18421 -36.66579 -33.87247 -33.22624 -32.48255 -32.07786 -30.42846 -29.01419 -28.01545 -25.69340 -24.49047 -23.39141 -22.18881 -21.39234 -21.16143 -20.57468 -19.28170 -18.14444 -17.19166 -17.03640 -16.42460 -15.40055 -15.11141 -14.94305 -14.77212 -14.46257 -14.22372 -14.06463 -13.82612 -13.61364 -13.47708 -13.14058 -13.03013 -12.68369 -12.61002 -12.56415 -12.06126 -11.93453 -11.76117 -11.70370 -11.58518 -11.35889 -11.14852 -11.04662 -11.00020 -10.92071 -10.82420 -10.65541 -10.53098 -9.68295 -9.57793 -9.49220 -9.00377 -8.84177 -8.38116 -7.10808 -6.65267 -4.20106 1.09470 2.13550 2.57899 3.03529 3.04746 3.10419 3.28624 3.62132 3.82141 4.31162 4.51287 4.65802 4.66152 4.92254 4.98377 5.00276 5.04758 5.06020 5.15421 5.20668 5.28344 5.40028 5.44517 5.49898 5.53267 5.59746 5.67295 5.69130 5.77261 5.78822 5.87951 5.90618 5.99824 6.01553 6.07745 6.12573 6.37455 6.43989 6.48911 6.55539 6.63117 6.79643 6.92545 7.13495 7.24061 7.28726 7.61981 7.64210 7.80345 8.41724 8.79734 9.46868 10.51515 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.025465 B = 0.001993 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.290957 B =14047.933017 C =14699.341328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.127 4.127 4 C 0.144 3.856 5 H 0.087 0.913 6 C -0.133 4.133 7 C -0.145 4.145 8 N -0.727 5.727 9 C 0.556 3.444 10 O -0.554 6.554 11 C -0.283 4.283 12 C 0.036 3.964 13 C -0.198 4.198 14 C -0.036 4.036 15 C -0.242 4.242 16 C 0.167 3.833 17 O -0.163 6.163 18 C -0.393 4.393 19 H 0.098 0.902 20 C 0.041 3.959 21 N -0.852 5.852 22 Si 0.945 3.055 23 H -0.265 1.265 24 H -0.274 1.274 25 H -0.274 1.274 26 C -0.200 4.200 27 C -0.043 4.043 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.042 0.958 39 H 0.058 0.942 40 H 0.398 0.602 41 H 0.122 0.878 42 H 0.122 0.878 43 H 0.114 0.886 44 H 0.131 0.869 45 H 0.273 0.727 46 H 0.120 0.880 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.652 9.724 15.717 22.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.165 4.165 4 C 0.040 3.960 5 H 0.105 0.895 6 C -0.172 4.172 7 C -0.203 4.203 8 N -0.378 5.378 9 C 0.348 3.652 10 O -0.434 6.434 11 C -0.304 4.304 12 C 0.017 3.983 13 C -0.199 4.199 14 C -0.054 4.054 15 C -0.261 4.261 16 C 0.110 3.890 17 O -0.064 6.064 18 C -0.468 4.468 19 H 0.115 0.885 20 C -0.165 4.165 21 N -0.485 5.485 22 Si 0.769 3.231 23 H -0.189 1.189 24 H -0.199 1.199 25 H -0.199 1.199 26 C -0.219 4.219 27 C -0.061 4.061 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.061 0.939 39 H 0.077 0.923 40 H 0.232 0.768 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.132 0.868 44 H 0.149 0.851 45 H 0.083 0.917 46 H 0.138 0.862 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -13.230 9.587 15.927 22.817 hybrid contribution 0.557 -0.270 -0.493 0.791 sum -12.673 9.317 15.434 22.037 Atomic orbital electron populations 1.21775 0.95843 1.01699 1.01652 1.21535 0.95682 0.96490 1.02622 1.21921 0.94084 0.97558 1.02897 1.21014 0.92947 0.94070 0.88006 0.89543 1.21957 0.97307 0.96247 1.01672 1.21804 0.94871 1.00318 1.03280 1.45926 1.18151 1.60605 1.13139 1.18333 0.80799 0.77110 0.88980 1.90777 1.56497 1.59264 1.36871 1.22474 0.99782 1.10857 0.97283 1.22271 0.93433 0.87014 0.95623 1.18472 0.96945 1.10922 0.93558 1.20989 0.93865 0.93778 0.96758 1.21103 1.02570 1.09367 0.93095 1.19614 0.92734 0.89939 0.86679 1.83905 1.29860 1.63927 1.28716 1.21523 0.86138 1.41997 0.97151 0.88492 1.25400 1.00426 0.96656 0.94044 1.70024 1.36948 1.41811 0.99720 0.85579 0.79785 0.78636 0.79095 1.18860 1.19926 1.19918 1.20149 0.95977 1.06866 0.98899 1.20876 0.97857 0.96016 0.91398 0.92871 0.92761 0.92739 0.91626 0.91956 0.90629 0.91432 0.92070 0.91575 0.92075 0.93917 0.92288 0.76836 0.86073 0.85979 0.86837 0.85129 0.91660 0.86154 0.86449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.91 37.16 0.37 -0.55 16 2 C -0.13 -0.88 5.82 -26.73 -0.16 -1.03 16 3 C -0.13 -0.82 4.75 -26.73 -0.13 -0.94 16 4 C 0.14 1.28 2.26 -67.93 -0.15 1.13 16 5 H 0.09 0.95 7.58 -51.93 -0.39 0.55 16 6 C -0.13 -1.17 5.61 -26.73 -0.15 -1.32 16 7 C -0.15 -1.63 8.51 37.16 0.32 -1.32 16 8 N -0.73 -7.12 4.48 -55.25 -0.25 -7.37 16 9 C 0.56 7.40 6.30 -13.04 -0.08 7.31 16 10 O -0.55 -9.02 13.37 5.17 0.07 -8.95 16 11 C -0.28 -3.79 9.41 -37.51 -0.35 -4.14 16 12 C 0.04 0.55 9.45 -37.19 -0.35 0.20 16 13 C -0.20 -3.37 5.87 -105.03 -0.62 -3.98 16 14 C -0.04 -0.63 9.78 -39.15 -0.38 -1.02 16 15 C -0.24 -5.02 9.14 -39.47 -0.36 -5.38 16 16 C 0.17 3.83 6.66 -38.89 -0.26 3.57 16 17 O -0.16 -4.43 9.74 0.71 0.01 -4.42 16 18 C -0.39 -10.44 9.48 30.91 0.29 -10.15 16 19 H 0.10 2.38 5.18 -52.48 -0.27 2.10 16 20 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 21 N -0.85 -23.87 13.67 55.48 0.76 -23.11 16 22 Si 0.94 19.56 29.55 -169.99 -5.02 14.54 16 23 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 24 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 25 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 26 C -0.20 -3.99 9.97 -39.47 -0.39 -4.38 16 27 C -0.04 -0.74 9.40 -39.15 -0.37 -1.10 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.50 7.75 -51.93 -0.40 0.10 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.82 5.64 -51.93 -0.29 0.53 16 38 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.73 7.84 -51.93 -0.41 0.32 16 40 H 0.40 3.04 8.58 -40.82 -0.35 2.69 16 41 H 0.12 1.41 6.07 -52.48 -0.32 1.09 16 42 H 0.12 1.84 7.52 -52.48 -0.39 1.44 16 43 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 44 H 0.13 2.69 5.62 -52.49 -0.29 2.39 16 45 H 0.27 6.97 8.31 -40.82 -0.34 6.64 16 46 H 0.12 2.29 8.06 -52.48 -0.42 1.87 16 47 H 0.12 1.63 6.16 -52.49 -0.32 1.30 16 LS Contribution 385.60 15.07 5.81 5.81 Total: -1.00 -29.91 385.60 -8.73 -38.64 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -7.24 Total: 6.98 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: -2.87 Total: -22.12 kcal Atomic # 7 Polarization: -30.99 SS G_CDS: 0.51 Total: -30.48 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.08 Total: -13.37 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -29.91 -8.73 -38.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194904516.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.140 kcal (2) G-P(sol) polarization free energy of solvation -29.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds