Wall clock time and date at job start Tue Mar 31 2020 12:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46810 * 2 1 4 4 C 1.53004 * 109.47217 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.46737 * 305.00312 * 4 3 2 6 6 C 1.52994 * 109.47247 * 184.99662 * 4 3 2 7 7 C 1.53000 * 109.47317 * 174.99893 * 6 4 3 8 8 N 1.46502 * 109.46920 * 64.99646 * 4 3 2 9 9 C 1.34779 * 120.00004 * 204.99828 * 8 4 3 10 10 O 1.21718 * 119.99908 * 0.02562 * 9 8 4 11 11 C 1.46255 * 119.99865 * 179.97438 * 9 8 4 12 12 C 1.35018 * 120.00031 * 179.97438 * 11 9 8 13 13 C 1.46960 * 120.00380 * 180.02562 * 12 11 9 14 14 C 1.40026 * 120.10267 * 180.02562 * 13 12 11 15 15 C 1.37594 * 119.89660 * 179.97438 * 14 13 12 16 16 C 1.39178 * 120.10071 * 0.27233 * 15 14 13 17 17 O 1.35579 * 119.89553 * 179.70771 * 16 15 14 18 18 C 1.34781 * 117.00320 * 354.44312 * 17 16 15 19 19 H 1.08005 * 119.99725 * 5.05569 * 18 17 16 20 20 C 1.38715 * 120.00342 * 185.05925 * 18 17 16 21 21 N 1.31515 * 119.99717 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00159 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.46917 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47200 * 119.99800 * 22 20 18 25 25 H 1.48498 * 109.46657 * 239.99839 * 22 20 18 26 26 C 1.39173 * 120.20477 * 359.44770 * 16 15 14 27 27 C 1.37597 * 120.09926 * 0.55723 * 26 16 15 28 28 H 1.08997 * 109.47168 * 300.00001 * 1 2 3 29 29 H 1.08996 * 109.47014 * 60.00846 * 1 2 3 30 30 H 1.09003 * 109.46627 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47812 * 239.99640 * 2 1 3 32 32 H 1.09000 * 109.47434 * 119.99371 * 2 1 3 33 33 H 1.08997 * 109.47256 * 60.00053 * 3 2 1 34 34 H 1.09000 * 109.47089 * 299.99274 * 3 2 1 35 35 H 1.09003 * 109.47269 * 295.00289 * 6 4 3 36 36 H 1.08997 * 109.47071 * 55.00257 * 6 4 3 37 37 H 1.09003 * 109.47147 * 59.99993 * 7 6 4 38 38 H 1.08998 * 109.47675 * 180.02562 * 7 6 4 39 39 H 1.09003 * 109.47274 * 300.00393 * 7 6 4 40 40 H 0.97004 * 120.00347 * 25.00647 * 8 4 3 41 41 H 1.08003 * 120.00046 * 0.02562 * 11 9 8 42 42 H 1.08003 * 119.99920 * 0.02562 * 12 11 9 43 43 H 1.08002 * 120.05214 * 359.95709 * 14 13 12 44 44 H 1.08001 * 119.95149 * 180.02562 * 15 14 13 45 45 H 0.96993 * 119.99812 * 180.02562 * 21 20 18 46 46 H 1.08004 * 119.95204 * 180.27325 * 26 16 15 47 47 H 1.08000 * 120.05069 * 179.74232 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4427 0.0006 5 1 3.9329 0.8533 0.8427 6 6 4.0798 2.8797 0.1263 7 6 5.6046 2.8707 0.2524 8 7 4.0588 0.8587 -1.2509 9 6 5.2809 0.2923 -1.2980 10 8 5.9781 0.2655 -0.3007 11 6 5.7687 -0.2912 -2.5473 12 6 6.9931 -0.8582 -2.5948 13 6 7.4835 -1.4440 -3.8502 14 6 8.7528 -2.0331 -3.9016 15 6 9.2075 -2.5808 -5.0790 16 6 8.4103 -2.5449 -6.2193 17 8 8.8649 -3.0805 -7.3788 18 6 10.1367 -3.5268 -7.3896 19 1 10.7176 -3.5240 -6.4791 20 6 10.6994 -3.9895 -8.5700 21 7 9.9918 -3.9932 -9.6786 22 14 12.4617 -4.6087 -8.5847 23 1 13.0356 -4.5008 -7.2195 24 1 12.4841 -6.0280 -9.0209 25 1 13.2665 -3.7888 -9.5257 26 6 7.1457 -1.9656 -6.1715 27 6 6.6827 -1.4153 -4.9984 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6767 1.9564 -0.8901 35 1 3.7918 3.4462 -0.7593 36 1 3.6448 3.3434 1.0116 37 1 6.0397 2.4069 -0.6330 38 1 5.9679 3.8944 0.3423 39 1 5.8926 2.3042 1.1379 40 1 3.5031 0.8798 -2.0456 41 1 5.1498 -0.2678 -3.4321 42 1 7.6121 -0.8813 -1.7101 43 1 9.3740 -2.0573 -3.0184 44 1 10.1862 -3.0357 -5.1196 45 1 10.3852 -4.3171 -10.5039 46 1 6.5287 -1.9439 -7.0577 47 1 5.7029 -0.9624 -4.9633 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194904516.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:35 Heat of formation + Delta-G solvation = -67.229179 kcal Electronic energy + Delta-G solvation = -25086.170091 eV Core-core repulsion = 21426.335095 eV Total energy + Delta-G solvation = -3659.834996 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.03533 -40.74270 -38.58065 -37.71981 -34.73766 -34.51139 -34.03802 -33.16197 -31.96607 -29.96811 -29.19380 -27.50156 -25.29662 -24.58223 -23.71325 -22.40133 -21.94210 -21.50027 -20.63182 -19.71073 -18.83380 -18.25234 -17.32550 -16.51240 -16.41228 -16.25534 -16.04016 -15.62240 -15.59752 -15.31682 -15.01872 -14.79483 -14.60626 -14.33020 -14.10528 -14.03552 -13.60459 -13.32595 -13.28038 -13.25645 -13.11079 -12.73914 -12.66597 -12.56493 -12.33155 -12.18645 -12.10951 -11.96464 -11.69719 -11.54757 -11.46179 -11.21187 -11.10237 -10.80325 -10.55192 -9.89448 -9.88175 -8.66894 -8.52619 -6.18622 -0.21581 0.58276 1.16452 1.35496 1.45141 1.53431 2.14830 2.38264 2.44606 2.86738 3.17942 3.42489 3.67070 3.87186 3.95304 4.05079 4.08663 4.11460 4.29021 4.31828 4.36404 4.40236 4.47508 4.50787 4.62487 4.67289 4.79292 4.87820 4.90738 4.94913 5.01595 5.03714 5.08440 5.12237 5.19610 5.22957 5.28939 5.32152 5.34885 5.35796 5.47861 5.50249 5.59087 5.63770 5.71508 5.82838 5.97366 6.10729 6.71399 6.91922 7.40966 7.69257 8.69723 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.025465 B = 0.001993 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.290957 B =14047.933017 C =14699.341328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C -0.117 4.117 4 C 0.144 3.856 5 H 0.064 0.936 6 C -0.129 4.129 7 C -0.144 4.144 8 N -0.709 5.709 9 C 0.549 3.451 10 O -0.584 6.584 11 C -0.245 4.245 12 C 0.011 3.989 13 C -0.169 4.169 14 C -0.042 4.042 15 C -0.249 4.249 16 C 0.129 3.871 17 O -0.220 6.220 18 C -0.416 4.416 19 H 0.105 0.895 20 C -0.020 4.020 21 N -0.914 5.914 22 Si 1.019 2.981 23 H -0.251 1.251 24 H -0.268 1.268 25 H -0.268 1.268 26 C -0.207 4.207 27 C -0.038 4.038 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.037 0.963 38 H 0.051 0.949 39 H 0.040 0.960 40 H 0.412 0.588 41 H 0.149 0.851 42 H 0.123 0.877 43 H 0.143 0.857 44 H 0.124 0.876 45 H 0.275 0.725 46 H 0.123 0.877 47 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.796 11.731 18.329 26.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.155 4.155 4 C 0.039 3.961 5 H 0.082 0.918 6 C -0.167 4.167 7 C -0.201 4.201 8 N -0.360 5.360 9 C 0.340 3.660 10 O -0.466 6.466 11 C -0.265 4.265 12 C -0.009 4.009 13 C -0.170 4.170 14 C -0.060 4.060 15 C -0.268 4.268 16 C 0.077 3.923 17 O -0.125 6.125 18 C -0.492 4.492 19 H 0.122 0.878 20 C -0.218 4.218 21 N -0.551 5.551 22 Si 0.838 3.162 23 H -0.174 1.174 24 H -0.193 1.193 25 H -0.193 1.193 26 C -0.226 4.226 27 C -0.056 4.056 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.057 0.943 38 H 0.070 0.930 39 H 0.059 0.941 40 H 0.249 0.751 41 H 0.166 0.834 42 H 0.141 0.859 43 H 0.161 0.839 44 H 0.142 0.858 45 H 0.084 0.916 46 H 0.141 0.859 47 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -15.437 11.634 18.597 26.824 hybrid contribution 0.826 -0.586 -0.800 1.291 sum -14.611 11.048 17.797 25.539 Atomic orbital electron populations 1.21755 0.94969 1.01748 1.02307 1.21527 0.96440 0.96697 1.01726 1.21869 0.91778 0.97454 1.04368 1.21095 0.94648 0.93743 0.86589 0.91781 1.21946 0.95381 0.96220 1.03196 1.21759 0.96826 1.00266 1.01256 1.45846 1.16988 1.58942 1.14267 1.18401 0.81659 0.77437 0.88465 1.90787 1.57599 1.60383 1.37877 1.22839 0.98807 1.06807 0.98066 1.22139 0.94676 0.89320 0.94764 1.18798 0.96051 1.07874 0.94239 1.21310 0.94828 0.93216 0.96656 1.21196 1.02295 1.09701 0.93603 1.20185 0.94306 0.91216 0.86602 1.83886 1.30442 1.67400 1.30783 1.21931 0.86729 1.42658 0.97841 0.87752 1.26615 1.05016 0.96795 0.93393 1.70154 1.39283 1.45073 1.00562 0.84520 0.73989 0.78046 0.79638 1.17447 1.19282 1.19308 1.20423 0.95058 1.06710 1.00378 1.21277 0.99422 0.94930 0.89965 0.92279 0.92038 0.93080 0.92298 0.93148 0.89284 0.89805 0.90808 0.89684 0.94340 0.92989 0.94096 0.75105 0.83377 0.85908 0.83937 0.85835 0.91597 0.85911 0.82284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 71.98 0.71 -0.65 16 2 C -0.13 -1.39 5.82 30.60 0.18 -1.22 16 3 C -0.12 -1.06 4.75 30.60 0.15 -0.91 16 4 C 0.14 2.11 2.26 44.99 0.10 2.21 16 5 H 0.06 1.28 7.58 -2.39 -0.02 1.26 16 6 C -0.13 -1.83 5.61 30.59 0.17 -1.66 16 7 C -0.14 -2.95 8.51 71.98 0.61 -2.34 16 8 N -0.71 -11.33 4.48 -446.91 -2.00 -13.33 16 9 C 0.55 12.90 6.30 86.33 0.54 13.44 16 10 O -0.58 -17.93 13.37 -4.41 -0.06 -17.99 16 11 C -0.24 -5.51 9.41 23.61 0.22 -5.28 16 12 C 0.01 0.29 9.45 23.82 0.23 0.52 16 13 C -0.17 -5.28 5.87 -20.13 -0.12 -5.40 16 14 C -0.04 -1.44 9.78 22.55 0.22 -1.22 16 15 C -0.25 -10.52 9.14 22.34 0.20 -10.32 16 16 C 0.13 6.17 6.66 22.72 0.15 6.32 16 17 O -0.22 -12.78 9.74 -20.36 -0.20 -12.98 16 18 C -0.42 -23.50 9.48 67.93 0.64 -22.85 16 19 H 0.11 5.41 5.18 -2.91 -0.02 5.40 16 20 C -0.02 -1.08 5.49 84.85 0.47 -0.62 16 21 N -0.91 -54.52 13.67 21.62 0.30 -54.22 16 22 Si 1.02 41.72 29.55 68.60 2.03 43.74 16 23 H -0.25 -9.52 7.11 99.48 0.71 -8.81 16 24 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 25 H -0.27 -10.55 7.11 99.48 0.71 -9.85 16 26 C -0.21 -8.25 9.97 22.34 0.22 -8.03 16 27 C -0.04 -1.20 9.40 22.55 0.21 -0.98 16 28 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.06 0.72 7.75 -2.39 -0.02 0.70 16 32 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.04 0.95 5.64 -2.39 -0.01 0.94 16 38 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.04 0.97 7.84 -2.39 -0.02 0.95 16 40 H 0.41 4.35 8.58 -92.71 -0.80 3.56 16 41 H 0.15 2.54 6.07 -2.91 -0.02 2.52 16 42 H 0.12 3.37 7.52 -2.91 -0.02 3.35 16 43 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 44 H 0.12 5.30 5.62 -2.91 -0.02 5.28 16 45 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 46 H 0.12 4.75 8.06 -2.91 -0.02 4.72 16 47 H 0.16 3.59 6.16 -2.91 -0.02 3.57 16 Total: -1.00 -71.09 385.60 5.16 -65.93 By element: Atomic # 1 Polarization: 27.68 SS G_CDS: 0.18 Total: 27.86 kcal Atomic # 6 Polarization: -43.92 SS G_CDS: 4.92 Total: -39.00 kcal Atomic # 7 Polarization: -65.85 SS G_CDS: -1.71 Total: -67.56 kcal Atomic # 8 Polarization: -30.72 SS G_CDS: -0.26 Total: -30.97 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.74 kcal Total: -71.09 5.16 -65.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194904516.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.296 kcal (2) G-P(sol) polarization free energy of solvation -71.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds