Wall clock time and date at job start Tue Mar 31 2020 11:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47337 * 2 1 4 4 C 1.53002 * 109.47106 * 119.99965 * 2 1 3 5 5 C 1.53002 * 109.46854 * 64.99922 * 4 2 1 6 6 N 1.46500 * 109.46917 * 174.97766 * 5 4 2 7 7 C 1.46500 * 120.00617 * 274.90433 * 6 5 4 8 8 C 1.50702 * 109.46839 * 89.99831 * 7 6 5 9 9 H 1.07994 * 120.00592 * 0.02562 * 8 7 6 10 10 C 1.37881 * 119.99422 * 180.02562 * 8 7 6 11 11 N 1.31519 * 119.99895 * 180.02562 * 10 8 7 12 12 Si 1.86801 * 120.00293 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.46810 * 90.00536 * 12 10 8 14 14 H 1.48500 * 109.46977 * 209.99930 * 12 10 8 15 15 H 1.48497 * 109.47150 * 330.00333 * 12 10 8 16 16 C 1.34785 * 119.99942 * 94.90365 * 6 5 4 17 17 O 1.21286 * 119.99479 * 4.34148 * 16 6 5 18 18 C 1.50699 * 120.00358 * 184.34360 * 16 6 5 19 19 H 1.09003 * 110.66087 * 50.23301 * 18 16 6 20 20 C 1.54699 * 110.74947 * 287.01790 * 18 16 6 21 21 C 1.51644 * 101.92450 * 266.95775 * 20 18 16 22 22 C 1.37749 * 132.16967 * 164.59380 * 21 20 18 23 23 C 1.38352 * 119.97737 * 180.35954 * 22 21 20 24 24 C 1.38292 * 119.76457 * 0.02562 * 23 22 21 25 25 C 1.37936 * 120.35199 * 359.85277 * 24 23 22 26 26 C 1.38882 * 107.04363 * 344.61439 * 21 20 18 27 27 O 1.36581 * 111.29019 * 358.90500 * 26 21 20 28 28 H 1.09001 * 109.47039 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47391 * 300.00200 * 1 2 3 30 30 H 1.08996 * 109.47176 * 60.00174 * 1 2 3 31 31 H 1.09000 * 109.47391 * 239.99800 * 2 1 3 32 32 H 1.09000 * 109.47780 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.47306 * 300.00312 * 3 2 1 34 34 H 1.09000 * 109.47043 * 59.99588 * 3 2 1 35 35 H 1.08993 * 109.47174 * 184.99649 * 4 2 1 36 36 H 1.09002 * 109.46909 * 305.00282 * 4 2 1 37 37 H 1.08997 * 109.47645 * 294.97726 * 5 4 2 38 38 H 1.08999 * 109.46975 * 54.98294 * 5 4 2 39 39 H 1.08999 * 109.47359 * 209.99654 * 7 6 5 40 40 H 1.08997 * 109.46638 * 329.99953 * 7 6 5 41 41 H 0.96991 * 120.00275 * 179.97438 * 11 10 8 42 42 H 1.09005 * 110.94203 * 25.11437 * 20 18 16 43 43 H 1.08997 * 110.94016 * 148.76438 * 20 18 16 44 44 H 1.07996 * 120.01177 * 0.34339 * 22 21 20 45 45 H 1.07990 * 120.11746 * 180.02562 * 23 22 21 46 46 H 1.07994 * 119.82199 * 179.82853 * 24 23 22 47 47 H 1.07994 * 119.87782 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6352 -2.1955 1.1879 6 7 2.2245 -2.9112 2.3222 7 6 3.5915 -3.4301 2.2309 8 6 4.5601 -2.3814 2.7138 9 1 4.1941 -1.4244 3.0550 10 6 5.9136 -2.6439 2.7200 11 7 6.7590 -1.7290 3.1418 12 14 6.5467 -4.2995 2.1304 13 1 6.8181 -4.2348 0.6719 14 1 7.7999 -4.6359 2.8526 15 1 5.5255 -5.3439 2.3981 16 6 1.5089 -3.0924 3.4500 17 8 0.3516 -2.7329 3.4981 18 6 2.1469 -3.7415 4.6511 19 1 3.0984 -3.2645 4.8861 20 6 2.3374 -5.2589 4.4176 21 6 1.0663 -5.8300 5.0157 22 6 0.4663 -7.0650 4.9059 23 6 -0.7212 -7.3181 5.5691 24 6 -1.3014 -6.3276 6.3403 25 6 -0.7010 -5.0910 6.4537 26 6 0.4971 -4.8298 5.7932 27 8 1.2621 -3.6983 5.7835 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1263 -0.6444 1.2951 36 1 1.6053 -0.2617 2.1370 37 1 0.5491 -2.2762 1.2320 38 1 1.9946 -2.6325 0.2563 39 1 3.6836 -4.3224 2.8501 40 1 3.8158 -3.6822 1.1945 41 1 7.7111 -1.9137 3.1465 42 1 2.4023 -5.4841 3.3530 43 1 3.2168 -5.6269 4.9460 44 1 0.9225 -7.8354 4.3020 45 1 -1.1934 -8.2857 5.4849 46 1 -2.2298 -6.5232 6.8562 47 1 -1.1605 -4.3232 7.0583 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264097127.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:31 Heat of formation + Delta-G solvation = -66.870452 kcal Electronic energy + Delta-G solvation = -27490.635937 eV Core-core repulsion = 23830.816497 eV Total energy + Delta-G solvation = -3659.819440 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.54093 -40.46498 -38.37758 -37.71964 -36.53719 -34.50176 -33.79017 -31.41586 -30.99797 -30.16115 -29.18579 -28.02171 -25.93566 -24.50635 -23.92367 -23.18266 -22.60856 -20.93379 -20.54402 -18.99530 -18.67600 -18.05780 -17.84565 -16.90352 -16.68296 -16.34032 -16.19614 -15.70715 -15.56679 -15.09952 -14.77546 -14.65788 -14.58828 -14.32217 -14.16629 -14.11831 -13.84272 -13.69694 -13.45589 -13.29306 -13.11120 -12.78308 -12.74795 -12.59470 -12.52699 -12.44252 -12.12750 -12.02354 -11.78968 -11.73998 -11.70356 -11.51946 -11.33518 -10.84562 -10.71243 -9.83852 -9.52125 -9.11884 -8.26799 -6.34685 0.33212 0.41311 1.42335 1.42766 1.43221 1.52343 1.98555 2.36311 2.38070 2.79575 3.06018 3.33566 3.40920 3.53624 3.90472 3.91979 3.97845 4.07134 4.18799 4.26553 4.28884 4.31221 4.52507 4.54681 4.56455 4.61775 4.64330 4.67567 4.69254 4.77151 4.82329 4.83182 4.91819 5.00041 5.08242 5.09312 5.16873 5.32160 5.38983 5.43141 5.46553 5.48398 5.49351 5.53690 5.62736 5.70520 6.15472 6.18215 6.49364 6.71949 7.10396 7.31259 8.88843 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009718 B = 0.005222 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2880.502443 B = 5360.305789 C = 7442.320521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.089 4.089 3 C -0.143 4.143 4 C -0.120 4.120 5 C 0.118 3.882 6 N -0.586 5.586 7 C 0.204 3.796 8 C -0.537 4.537 9 H 0.034 0.966 10 C 0.022 3.978 11 N -0.941 5.941 12 Si 0.933 3.067 13 H -0.267 1.267 14 H -0.288 1.288 15 H -0.228 1.228 16 C 0.502 3.498 17 O -0.579 6.579 18 C 0.064 3.936 19 H 0.140 0.860 20 C -0.091 4.091 21 C -0.186 4.186 22 C -0.075 4.075 23 C -0.144 4.144 24 C -0.084 4.084 25 C -0.154 4.154 26 C 0.073 3.927 27 O -0.306 6.306 28 H 0.054 0.946 29 H 0.040 0.960 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.044 0.956 33 H 0.075 0.925 34 H 0.043 0.957 35 H 0.055 0.945 36 H 0.029 0.971 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.057 0.943 40 H 0.052 0.948 41 H 0.267 0.733 42 H 0.104 0.896 43 H 0.118 0.882 44 H 0.150 0.850 45 H 0.164 0.836 46 H 0.163 0.837 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.991 -10.636 -2.409 16.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.108 4.108 3 C -0.201 4.201 4 C -0.159 4.159 5 C -0.004 4.004 6 N -0.317 5.317 7 C 0.083 3.917 8 C -0.576 4.576 9 H 0.052 0.948 10 C -0.177 4.177 11 N -0.580 5.580 12 Si 0.755 3.245 13 H -0.192 1.192 14 H -0.214 1.214 15 H -0.150 1.150 16 C 0.290 3.710 17 O -0.461 6.461 18 C 0.005 3.995 19 H 0.157 0.843 20 C -0.128 4.128 21 C -0.186 4.186 22 C -0.093 4.093 23 C -0.162 4.162 24 C -0.102 4.102 25 C -0.172 4.172 26 C 0.029 3.971 27 O -0.219 6.219 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.063 0.937 33 H 0.094 0.906 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.048 0.952 37 H 0.095 0.905 38 H 0.111 0.889 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.123 0.877 43 H 0.136 0.864 44 H 0.168 0.832 45 H 0.182 0.818 46 H 0.181 0.819 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -12.397 -10.221 -2.215 16.219 hybrid contribution 1.201 0.483 0.084 1.297 sum -11.197 -9.738 -2.131 14.992 Atomic orbital electron populations 1.21840 0.94464 1.01854 1.01767 1.21060 0.96332 0.96310 0.97070 1.21799 1.00548 0.95776 1.01946 1.21916 1.00969 0.95226 0.97796 1.21593 0.98534 0.91810 0.88449 1.47949 1.15472 1.54421 1.13821 1.19965 0.77913 0.94860 0.99000 1.21463 0.91378 1.00874 1.43870 0.94764 1.25755 0.96758 1.00687 0.94487 1.70053 1.03294 1.36587 1.48071 0.85934 0.79068 0.80432 0.79041 1.19160 1.21434 1.15008 1.20951 0.85966 0.79215 0.84869 1.90600 1.18306 1.53760 1.83403 1.23352 0.93098 0.98861 0.84230 0.84307 1.21805 0.97388 0.89954 1.03695 1.20983 0.97849 0.96292 1.03505 1.20691 0.95471 0.94330 0.98782 1.21478 0.95779 1.00940 0.98004 1.21276 1.00163 0.90963 0.97804 1.20599 0.92626 0.99951 1.04053 1.20177 0.93044 0.85791 0.98103 1.86992 1.50356 1.41006 1.43577 0.92673 0.94061 0.90820 0.89879 0.93679 0.90639 0.93741 0.92592 0.95204 0.90530 0.88875 0.92511 0.93053 0.92377 0.87738 0.86377 0.83185 0.81832 0.81904 0.85408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.57 8.95 71.98 0.64 -2.92 16 2 C -0.09 -2.50 2.92 -10.79 -0.03 -2.53 16 3 C -0.14 -3.86 9.19 71.98 0.66 -3.20 16 4 C -0.12 -4.43 4.92 30.60 0.15 -4.28 16 5 C 0.12 4.20 5.16 86.38 0.45 4.65 16 6 N -0.59 -23.57 2.46 -826.14 -2.03 -25.61 16 7 C 0.20 8.29 3.82 85.63 0.33 8.62 16 8 C -0.54 -27.28 8.53 25.60 0.22 -27.06 16 9 H 0.03 2.03 7.55 -2.91 -0.02 2.01 16 10 C 0.02 1.16 5.47 84.65 0.46 1.62 16 11 N -0.94 -54.44 13.96 21.45 0.30 -54.14 16 12 Si 0.93 37.69 27.47 68.60 1.88 39.57 16 13 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 14 H -0.29 -11.92 7.11 99.48 0.71 -11.21 16 15 H -0.23 -7.82 6.54 99.48 0.65 -7.17 16 16 C 0.50 21.61 6.92 87.66 0.61 22.22 16 17 O -0.58 -27.90 15.91 15.08 0.24 -27.66 16 18 C 0.06 2.53 3.18 30.43 0.10 2.63 16 19 H 0.14 5.81 7.47 -2.39 -0.02 5.80 16 20 C -0.09 -2.88 5.42 30.73 0.17 -2.72 16 21 C -0.19 -5.73 6.26 -19.52 -0.12 -5.85 16 22 C -0.07 -1.76 10.03 22.18 0.22 -1.53 16 23 C -0.14 -2.82 10.07 22.31 0.22 -2.59 16 24 C -0.08 -1.81 10.02 22.21 0.22 -1.59 16 25 C -0.15 -4.51 10.06 22.45 0.23 -4.28 16 26 C 0.07 2.61 6.79 22.68 0.15 2.76 16 27 O -0.31 -12.70 10.48 -82.14 -0.86 -13.56 16 28 H 0.05 1.38 6.68 -2.39 -0.02 1.37 16 29 H 0.04 1.12 8.14 -2.39 -0.02 1.11 16 30 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 34 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.06 2.41 6.75 -2.39 -0.02 2.39 16 36 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.08 2.74 5.90 -2.39 -0.01 2.73 16 38 H 0.09 2.83 7.96 -2.39 -0.02 2.81 16 39 H 0.06 2.12 3.77 -2.39 -0.01 2.12 16 40 H 0.05 1.94 7.37 -2.39 -0.02 1.92 16 41 H 0.27 14.53 8.31 -92.72 -0.77 13.76 16 42 H 0.10 3.08 6.55 -2.38 -0.02 3.06 16 43 H 0.12 3.27 8.14 -2.39 -0.02 3.25 16 44 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 45 H 0.16 1.92 8.06 -2.92 -0.02 1.90 16 46 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 47 H 0.13 3.50 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -69.32 374.43 5.10 -64.22 By element: Atomic # 1 Polarization: 32.34 SS G_CDS: 0.90 Total: 33.24 kcal Atomic # 6 Polarization: -20.74 SS G_CDS: 4.68 Total: -16.06 kcal Atomic # 7 Polarization: -78.01 SS G_CDS: -1.73 Total: -79.75 kcal Atomic # 8 Polarization: -40.60 SS G_CDS: -0.62 Total: -41.22 kcal Atomic # 14 Polarization: 37.69 SS G_CDS: 1.88 Total: 39.57 kcal Total: -69.32 5.10 -64.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264097127.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.655 kcal (2) G-P(sol) polarization free energy of solvation -69.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds