Wall clock time and date at job start Tue Mar 31 2020 11:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47226 * 2 1 4 4 C 1.52996 * 109.46904 * 119.99622 * 2 1 3 5 5 C 1.52998 * 109.47099 * 65.00321 * 4 2 1 6 6 N 1.46506 * 109.47320 * 180.02562 * 5 4 2 7 7 C 1.46499 * 119.99537 * 269.99999 * 6 5 4 8 8 C 1.50697 * 109.46949 * 269.99553 * 7 6 5 9 9 H 1.08004 * 120.00186 * 0.02562 * 8 7 6 10 10 C 1.37881 * 120.00081 * 180.02562 * 8 7 6 11 11 N 1.31519 * 120.00096 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 120.00103 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47135 * 359.97438 * 12 10 8 14 14 H 1.48493 * 109.47061 * 119.99902 * 12 10 8 15 15 H 1.48503 * 109.47075 * 240.00004 * 12 10 8 16 16 C 1.34777 * 120.00264 * 89.99349 * 6 5 4 17 17 O 1.21283 * 119.99750 * 180.02562 * 16 6 5 18 18 C 1.50702 * 119.99928 * 0.28128 * 16 6 5 19 19 H 1.09002 * 110.66332 * 306.48688 * 18 16 6 20 20 C 1.54706 * 110.74928 * 69.90389 * 18 16 6 21 21 C 1.51645 * 101.92978 * 93.04581 * 20 18 16 22 22 C 1.37734 * 132.17099 * 195.90344 * 21 20 18 23 23 C 1.38352 * 119.97657 * 179.01018 * 22 21 20 24 24 C 1.38288 * 119.76468 * 359.97438 * 23 22 21 25 25 C 1.37929 * 120.35392 * 0.17414 * 24 23 22 26 26 C 1.38881 * 107.03803 * 15.35566 * 21 20 18 27 27 O 1.36139 * 111.23570 * 1.11203 * 26 21 20 28 28 H 1.09005 * 109.47352 * 300.00400 * 1 2 3 29 29 H 1.09002 * 109.47121 * 60.00179 * 1 2 3 30 30 H 1.08996 * 109.47182 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47013 * 239.99575 * 2 1 3 32 32 H 1.08994 * 109.47050 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46924 * 299.99941 * 3 2 1 34 34 H 1.08999 * 109.46859 * 59.99426 * 3 2 1 35 35 H 1.08997 * 109.47528 * 305.00106 * 4 2 1 36 36 H 1.09004 * 109.47258 * 185.00112 * 4 2 1 37 37 H 1.08994 * 109.47354 * 59.99979 * 5 4 2 38 38 H 1.09001 * 109.47139 * 299.99554 * 5 4 2 39 39 H 1.09001 * 109.47567 * 29.99407 * 7 6 5 40 40 H 1.09005 * 109.47076 * 149.99913 * 7 6 5 41 41 H 0.96991 * 119.99957 * 180.02562 * 11 10 8 42 42 H 1.08999 * 110.93453 * 211.20294 * 20 18 16 43 43 H 1.08998 * 110.94259 * 334.88384 * 20 18 16 44 44 H 1.07998 * 120.01200 * 359.04019 * 22 21 20 45 45 H 1.08002 * 120.11863 * 179.97438 * 23 22 21 46 46 H 1.08004 * 119.82186 * 180.19013 * 24 23 22 47 47 H 1.07994 * 119.88123 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6352 -2.1954 1.1880 6 7 2.1230 -2.8859 2.3846 7 6 3.4512 -3.5038 2.3833 8 6 3.3407 -4.9310 1.9123 9 1 2.3775 -5.3371 1.6407 10 6 4.4693 -5.7186 1.8281 11 7 5.6423 -5.2244 2.1594 12 14 4.3325 -7.4876 1.2436 13 1 2.9135 -7.7986 0.9351 14 1 5.1567 -7.6704 0.0221 15 1 4.8182 -8.4001 2.3098 16 6 1.3498 -2.9524 3.4865 17 8 1.7538 -3.5236 4.4772 18 6 -0.0191 -2.3220 3.4857 19 1 0.0391 -1.2767 3.1825 20 6 -0.9848 -3.1099 2.5692 21 6 -1.6314 -4.0711 3.5477 22 6 -2.3623 -5.2242 3.3651 23 6 -2.8252 -5.9302 4.4612 24 6 -2.5506 -5.4740 5.7374 25 6 -1.8215 -4.3179 5.9226 26 6 -1.3564 -3.5985 4.8244 27 8 -0.6366 -2.4439 4.7783 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6053 -0.2617 2.1370 36 1 3.1263 -0.6443 1.2953 37 1 2.0698 -2.6549 0.3004 38 1 0.5489 -2.2723 1.1421 39 1 4.1090 -2.9501 1.7133 40 1 3.8616 -3.4852 3.3929 41 1 6.4362 -5.7783 2.0998 42 1 -1.7278 -2.4474 2.1253 43 1 -0.4360 -3.6499 1.7976 44 1 -2.5737 -5.5773 2.3666 45 1 -3.3989 -6.8344 4.3206 46 1 -2.9088 -6.0261 6.5938 47 1 -1.6111 -3.9689 6.9227 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264097136.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:35 Heat of formation + Delta-G solvation = -51.816239 kcal Electronic energy + Delta-G solvation = -27569.274094 eV Core-core repulsion = 23910.107454 eV Total energy + Delta-G solvation = -3659.166641 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.31758 -38.85622 -37.20913 -36.70022 -34.57083 -32.94948 -32.34169 -29.92262 -29.68900 -29.00040 -27.22393 -26.95879 -24.48395 -23.36195 -22.62766 -21.93946 -21.52517 -19.96065 -18.99268 -17.31625 -16.78526 -16.54293 -16.47004 -15.62523 -15.36264 -15.01469 -14.76412 -14.36122 -14.12685 -13.83513 -13.76249 -13.42873 -13.24046 -13.17800 -12.88382 -12.61869 -12.42107 -12.31863 -12.18977 -11.87113 -11.65614 -11.46717 -11.34805 -11.31064 -11.15679 -10.93972 -10.87235 -10.72159 -10.66241 -10.54756 -10.37968 -10.13774 -9.62565 -9.04393 -8.77344 -8.45685 -7.93349 -7.72279 -6.06516 -4.11083 1.39792 1.50321 3.09921 3.28023 3.32485 3.36538 3.41691 3.84574 3.89418 4.41902 4.46100 4.58720 4.72573 4.89437 4.93497 4.96518 5.05368 5.11641 5.24470 5.28122 5.31678 5.34799 5.47386 5.53426 5.58431 5.62464 5.69553 5.71469 5.75041 5.80719 5.82880 5.88695 6.04870 6.11607 6.14238 6.21609 6.38328 6.40923 6.46637 6.51823 6.56661 6.68652 6.99934 7.29912 7.40533 7.48883 7.89688 8.20307 8.31270 8.85207 9.00175 9.53966 11.01710 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.007478 B = 0.006163 C = 0.003877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3743.487796 B = 4542.301136 C = 7220.680759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.095 4.095 3 C -0.146 4.146 4 C -0.135 4.135 5 C 0.100 3.900 6 N -0.590 5.590 7 C 0.247 3.753 8 C -0.525 4.525 9 H 0.057 0.943 10 C 0.062 3.938 11 N -0.894 5.894 12 Si 0.896 3.104 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.282 1.282 16 C 0.491 3.509 17 O -0.520 6.520 18 C 0.063 3.937 19 H 0.132 0.868 20 C -0.101 4.101 21 C -0.171 4.171 22 C -0.068 4.068 23 C -0.153 4.153 24 C -0.087 4.087 25 C -0.135 4.135 26 C 0.119 3.881 27 O -0.279 6.279 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.034 0.966 40 H 0.043 0.957 41 H 0.263 0.737 42 H 0.098 0.902 43 H 0.102 0.898 44 H 0.123 0.877 45 H 0.125 0.875 46 H 0.128 0.872 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.948 8.553 -2.852 18.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.114 4.114 3 C -0.204 4.204 4 C -0.174 4.174 5 C -0.024 4.024 6 N -0.323 5.323 7 C 0.128 3.872 8 C -0.564 4.564 9 H 0.075 0.925 10 C -0.140 4.140 11 N -0.533 5.533 12 Si 0.724 3.276 13 H -0.198 1.198 14 H -0.209 1.209 15 H -0.208 1.208 16 C 0.275 3.725 17 O -0.395 6.395 18 C 0.003 3.997 19 H 0.150 0.850 20 C -0.138 4.138 21 C -0.172 4.172 22 C -0.086 4.086 23 C -0.171 4.171 24 C -0.105 4.105 25 C -0.154 4.154 26 C 0.074 3.926 27 O -0.191 6.191 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.104 0.896 38 H 0.088 0.912 39 H 0.052 0.948 40 H 0.061 0.939 41 H 0.072 0.928 42 H 0.116 0.884 43 H 0.120 0.880 44 H 0.141 0.859 45 H 0.143 0.857 46 H 0.146 0.854 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -15.468 8.364 -2.125 17.713 hybrid contribution 0.217 -1.004 -0.542 1.161 sum -15.252 7.360 -2.667 17.144 Atomic orbital electron populations 1.21934 0.95528 1.01845 1.01558 1.21073 0.95615 0.96138 0.98602 1.21828 1.01167 0.95992 1.01364 1.22135 1.02295 0.95532 0.97418 1.21750 0.99074 0.91657 0.89876 1.48204 1.19330 1.53642 1.11131 1.19308 0.76652 0.92413 0.98821 1.21440 0.93841 0.96672 1.44432 0.92465 1.24924 0.95164 0.98576 0.95367 1.69938 0.98445 1.36691 1.48217 0.86468 0.78101 0.84717 0.78314 1.19798 1.20925 1.20845 1.20444 0.86253 0.81509 0.84262 1.90713 1.73075 1.42549 1.33189 1.23449 0.92396 1.02006 0.81890 0.85043 1.21833 0.97487 0.96736 0.97741 1.20715 1.03739 0.98605 0.94154 1.20261 0.96227 0.92853 0.99283 1.20972 1.03036 1.00814 0.92311 1.20826 0.97275 0.94964 0.97461 1.20242 1.02619 0.95398 0.97134 1.19556 0.92040 0.86583 0.94422 1.86874 1.61649 1.35614 1.35009 0.92777 0.92869 0.92357 0.90828 0.92605 0.92963 0.92855 0.92236 0.90973 0.89611 0.91203 0.94772 0.93900 0.92752 0.88405 0.87996 0.85886 0.85679 0.85368 0.85537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 8.95 37.16 0.33 -0.98 16 2 C -0.10 -0.97 2.92 -90.62 -0.26 -1.23 16 3 C -0.15 -1.36 9.19 37.16 0.34 -1.02 16 4 C -0.14 -1.74 4.96 -26.73 -0.13 -1.87 16 5 C 0.10 1.52 4.63 -4.04 -0.02 1.51 16 6 N -0.59 -12.21 2.46 -175.06 -0.43 -12.64 16 7 C 0.25 6.39 5.16 -5.20 -0.03 6.37 16 8 C -0.52 -14.80 9.39 -34.44 -0.32 -15.13 16 9 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 10 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 11 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 12 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 13 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 16 C 0.49 10.52 6.93 -10.98 -0.08 10.44 16 17 O -0.52 -13.87 16.03 -13.48 -0.22 -14.08 16 18 C 0.06 1.02 3.17 -26.98 -0.09 0.93 16 19 H 0.13 1.71 6.95 -51.93 -0.36 1.35 16 20 C -0.10 -1.40 5.37 -26.52 -0.14 -1.54 16 21 C -0.17 -2.70 6.26 -104.10 -0.65 -3.35 16 22 C -0.07 -0.94 10.03 -39.72 -0.40 -1.34 16 23 C -0.15 -1.94 10.07 -39.52 -0.40 -2.34 16 24 C -0.09 -1.13 10.02 -39.68 -0.40 -1.53 16 25 C -0.14 -2.07 10.06 -39.31 -0.40 -2.46 16 26 C 0.12 2.07 6.83 -38.95 -0.27 1.80 16 27 O -0.28 -5.07 10.43 -39.22 -0.41 -5.48 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.49 6.56 -51.93 -0.34 0.15 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.74 7.19 -51.93 -0.37 0.37 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.09 1.37 8.07 -51.93 -0.42 0.95 16 38 H 0.07 0.88 3.13 -51.93 -0.16 0.72 16 39 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 40 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 41 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.10 1.47 6.57 -51.93 -0.34 1.12 16 44 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 45 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 46 H 0.13 1.26 8.06 -52.48 -0.42 0.83 16 47 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 379.90 15.07 5.73 5.73 Total: -1.00 -34.56 379.90 -10.04 -44.60 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -7.42 Total: 0.85 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -3.00 Total: -10.07 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 0.31 Total: -38.46 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.63 Total: -19.56 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.56 -10.04 -44.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264097136.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.216 kcal (2) G-P(sol) polarization free energy of solvation -34.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds