Wall clock time and date at job start Tue Mar 31 2020 11:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47226 * 2 1 4 4 C 1.52996 * 109.46904 * 119.99622 * 2 1 3 5 5 C 1.52998 * 109.47099 * 65.00321 * 4 2 1 6 6 N 1.46506 * 109.47320 * 180.02562 * 5 4 2 7 7 C 1.46499 * 119.99537 * 269.99999 * 6 5 4 8 8 C 1.50697 * 109.46949 * 269.99553 * 7 6 5 9 9 H 1.08004 * 120.00186 * 0.02562 * 8 7 6 10 10 C 1.37881 * 120.00081 * 180.02562 * 8 7 6 11 11 N 1.31519 * 120.00096 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 120.00103 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47135 * 359.97438 * 12 10 8 14 14 H 1.48493 * 109.47061 * 119.99902 * 12 10 8 15 15 H 1.48503 * 109.47075 * 240.00004 * 12 10 8 16 16 C 1.34777 * 120.00264 * 89.99349 * 6 5 4 17 17 O 1.21283 * 119.99750 * 180.02562 * 16 6 5 18 18 C 1.50702 * 119.99928 * 0.28128 * 16 6 5 19 19 H 1.09002 * 110.66332 * 306.48688 * 18 16 6 20 20 C 1.54706 * 110.74928 * 69.90389 * 18 16 6 21 21 C 1.51645 * 101.92978 * 93.04581 * 20 18 16 22 22 C 1.37734 * 132.17099 * 195.90344 * 21 20 18 23 23 C 1.38352 * 119.97657 * 179.01018 * 22 21 20 24 24 C 1.38288 * 119.76468 * 359.97438 * 23 22 21 25 25 C 1.37929 * 120.35392 * 0.17414 * 24 23 22 26 26 C 1.38881 * 107.03803 * 15.35566 * 21 20 18 27 27 O 1.36139 * 111.23570 * 1.11203 * 26 21 20 28 28 H 1.09005 * 109.47352 * 300.00400 * 1 2 3 29 29 H 1.09002 * 109.47121 * 60.00179 * 1 2 3 30 30 H 1.08996 * 109.47182 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47013 * 239.99575 * 2 1 3 32 32 H 1.08994 * 109.47050 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46924 * 299.99941 * 3 2 1 34 34 H 1.08999 * 109.46859 * 59.99426 * 3 2 1 35 35 H 1.08997 * 109.47528 * 305.00106 * 4 2 1 36 36 H 1.09004 * 109.47258 * 185.00112 * 4 2 1 37 37 H 1.08994 * 109.47354 * 59.99979 * 5 4 2 38 38 H 1.09001 * 109.47139 * 299.99554 * 5 4 2 39 39 H 1.09001 * 109.47567 * 29.99407 * 7 6 5 40 40 H 1.09005 * 109.47076 * 149.99913 * 7 6 5 41 41 H 0.96991 * 119.99957 * 180.02562 * 11 10 8 42 42 H 1.08999 * 110.93453 * 211.20294 * 20 18 16 43 43 H 1.08998 * 110.94259 * 334.88384 * 20 18 16 44 44 H 1.07998 * 120.01200 * 359.04019 * 22 21 20 45 45 H 1.08002 * 120.11863 * 179.97438 * 23 22 21 46 46 H 1.08004 * 119.82186 * 180.19013 * 24 23 22 47 47 H 1.07994 * 119.88123 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6352 -2.1954 1.1880 6 7 2.1230 -2.8859 2.3846 7 6 3.4512 -3.5038 2.3833 8 6 3.3407 -4.9310 1.9123 9 1 2.3775 -5.3371 1.6407 10 6 4.4693 -5.7186 1.8281 11 7 5.6423 -5.2244 2.1594 12 14 4.3325 -7.4876 1.2436 13 1 2.9135 -7.7986 0.9351 14 1 5.1567 -7.6704 0.0221 15 1 4.8182 -8.4001 2.3098 16 6 1.3498 -2.9524 3.4865 17 8 1.7538 -3.5236 4.4772 18 6 -0.0191 -2.3220 3.4857 19 1 0.0391 -1.2767 3.1825 20 6 -0.9848 -3.1099 2.5692 21 6 -1.6314 -4.0711 3.5477 22 6 -2.3623 -5.2242 3.3651 23 6 -2.8252 -5.9302 4.4612 24 6 -2.5506 -5.4740 5.7374 25 6 -1.8215 -4.3179 5.9226 26 6 -1.3564 -3.5985 4.8244 27 8 -0.6366 -2.4439 4.7783 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6053 -0.2617 2.1370 36 1 3.1263 -0.6443 1.2953 37 1 2.0698 -2.6549 0.3004 38 1 0.5489 -2.2723 1.1421 39 1 4.1090 -2.9501 1.7133 40 1 3.8616 -3.4852 3.3929 41 1 6.4362 -5.7783 2.0998 42 1 -1.7278 -2.4474 2.1253 43 1 -0.4360 -3.6499 1.7976 44 1 -2.5737 -5.5773 2.3666 45 1 -3.3989 -6.8344 4.3206 46 1 -2.9088 -6.0261 6.5938 47 1 -1.6111 -3.9689 6.9227 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264097136.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:34 Heat of formation + Delta-G solvation = -71.184847 kcal Electronic energy + Delta-G solvation = -27570.113980 eV Core-core repulsion = 23910.107454 eV Total energy + Delta-G solvation = -3660.006527 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.57674 -40.36276 -38.34141 -37.94433 -36.13558 -34.81513 -33.70815 -31.13175 -31.00621 -30.23624 -28.76419 -27.89245 -25.96320 -24.88933 -23.99650 -23.20944 -22.63355 -20.83519 -20.53534 -18.71652 -18.58384 -18.09690 -17.83806 -16.93856 -16.78000 -16.38282 -16.03755 -15.90076 -15.49928 -15.01410 -14.83850 -14.53757 -14.45753 -14.34920 -14.30729 -13.99831 -13.75629 -13.63917 -13.38438 -13.04803 -12.88780 -12.79899 -12.68450 -12.62587 -12.57722 -12.55428 -12.28786 -12.13990 -11.90659 -11.75642 -11.55686 -11.43465 -11.38150 -10.68986 -10.67823 -9.84001 -9.50804 -9.11819 -8.25613 -6.40145 0.32632 0.39960 1.33190 1.36148 1.47286 1.57347 1.95979 2.34036 2.41689 2.79709 3.04294 3.32026 3.36785 3.47799 3.89714 3.93339 3.99519 4.12991 4.13106 4.21039 4.26647 4.29949 4.50236 4.56894 4.59223 4.64771 4.67772 4.72679 4.85185 4.88850 4.95559 4.97335 5.07809 5.12425 5.15301 5.18808 5.24039 5.36575 5.39645 5.43165 5.49729 5.52861 5.55793 5.61119 5.63261 5.79603 6.01957 6.17143 6.61358 6.69977 7.21068 7.35849 8.82115 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.007478 B = 0.006163 C = 0.003877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3743.487796 B = 4542.301136 C = 7220.680759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.090 4.090 3 C -0.146 4.146 4 C -0.128 4.128 5 C 0.097 3.903 6 N -0.590 5.590 7 C 0.263 3.737 8 C -0.539 4.539 9 H 0.054 0.946 10 C 0.008 3.992 11 N -0.928 5.928 12 Si 0.966 3.034 13 H -0.265 1.265 14 H -0.266 1.266 15 H -0.284 1.284 16 C 0.481 3.519 17 O -0.587 6.587 18 C 0.070 3.930 19 H 0.169 0.831 20 C -0.092 4.092 21 C -0.189 4.189 22 C -0.079 4.079 23 C -0.149 4.149 24 C -0.089 4.089 25 C -0.157 4.157 26 C 0.076 3.924 27 O -0.300 6.300 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.044 0.956 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.046 0.954 37 H 0.077 0.923 38 H 0.105 0.895 39 H 0.026 0.974 40 H -0.008 1.008 41 H 0.267 0.733 42 H 0.145 0.855 43 H 0.097 0.903 44 H 0.149 0.851 45 H 0.159 0.841 46 H 0.160 0.840 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.989 8.079 -4.871 21.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.110 4.110 3 C -0.203 4.203 4 C -0.167 4.167 5 C -0.025 4.025 6 N -0.321 5.321 7 C 0.142 3.858 8 C -0.578 4.578 9 H 0.072 0.928 10 C -0.191 4.191 11 N -0.568 5.568 12 Si 0.790 3.210 13 H -0.189 1.189 14 H -0.191 1.191 15 H -0.210 1.210 16 C 0.268 3.732 17 O -0.468 6.468 18 C 0.011 3.989 19 H 0.186 0.814 20 C -0.129 4.129 21 C -0.189 4.189 22 C -0.097 4.097 23 C -0.167 4.167 24 C -0.106 4.106 25 C -0.175 4.175 26 C 0.031 3.969 27 O -0.213 6.213 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.065 0.935 37 H 0.096 0.904 38 H 0.123 0.877 39 H 0.044 0.956 40 H 0.010 0.990 41 H 0.076 0.924 42 H 0.163 0.837 43 H 0.115 0.885 44 H 0.166 0.834 45 H 0.177 0.823 46 H 0.177 0.823 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -18.541 7.926 -4.190 20.595 hybrid contribution 1.167 -0.871 0.142 1.463 sum -17.374 7.055 -4.048 19.184 Atomic orbital electron populations 1.21950 0.93643 1.02573 1.02708 1.21043 0.97156 0.96118 0.96633 1.21823 1.00553 0.95571 1.02353 1.22069 1.00887 0.94221 0.99534 1.22076 1.00948 0.92345 0.87083 1.48179 1.17530 1.53355 1.13062 1.18741 0.79385 0.92351 0.95353 1.21686 0.93799 0.97762 1.44542 0.92799 1.25857 0.94737 1.03189 0.95331 1.70059 0.99249 1.38497 1.49020 0.85397 0.78632 0.78844 0.78154 1.18910 1.19142 1.20966 1.21529 0.88045 0.80545 0.83061 1.90665 1.74890 1.45637 1.35565 1.23544 0.89210 1.03630 0.82523 0.81422 1.21921 0.97484 0.96854 0.96631 1.21069 1.04328 0.99628 0.93913 1.20694 0.95718 0.92212 1.01033 1.21468 1.02065 1.01417 0.91751 1.21253 0.96223 0.94065 0.99087 1.20604 1.03403 0.96417 0.97123 1.19994 0.93610 0.87312 0.95985 1.86839 1.62016 1.36402 1.36014 0.91960 0.91505 0.91798 0.91025 0.93693 0.91373 0.92455 0.91507 0.93511 0.90439 0.87673 0.95556 0.98973 0.92400 0.83745 0.88453 0.83373 0.82292 0.82256 0.85399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 8.95 71.98 0.64 -1.42 16 2 C -0.09 -1.65 2.92 -10.79 -0.03 -1.69 16 3 C -0.15 -2.45 9.19 71.98 0.66 -1.79 16 4 C -0.13 -3.23 4.96 30.59 0.15 -3.07 16 5 C 0.10 2.90 4.63 86.38 0.40 3.30 16 6 N -0.59 -25.23 2.46 -826.15 -2.03 -27.26 16 7 C 0.26 14.43 5.16 85.63 0.44 14.87 16 8 C -0.54 -31.39 9.39 25.60 0.24 -31.15 16 9 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 10 C 0.01 0.46 5.46 84.66 0.46 0.92 16 11 N -0.93 -56.89 13.29 21.45 0.28 -56.60 16 12 Si 0.97 45.29 29.54 68.60 2.03 47.31 16 13 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 14 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 15 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 16 C 0.48 21.29 6.93 87.66 0.61 21.90 16 17 O -0.59 -33.33 16.03 15.16 0.24 -33.08 16 18 C 0.07 2.24 3.17 30.43 0.10 2.33 16 19 H 0.17 3.96 6.95 -2.39 -0.02 3.94 16 20 C -0.09 -2.33 5.37 30.73 0.16 -2.16 16 21 C -0.19 -5.65 6.26 -19.53 -0.12 -5.78 16 22 C -0.08 -1.98 10.03 22.18 0.22 -1.75 16 23 C -0.15 -3.34 10.07 22.31 0.22 -3.12 16 24 C -0.09 -2.13 10.02 22.21 0.22 -1.91 16 25 C -0.16 -4.81 10.06 22.45 0.23 -4.58 16 26 C 0.08 2.62 6.83 22.68 0.15 2.77 16 27 O -0.30 -11.00 10.43 -76.93 -0.80 -11.80 16 28 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 0.80 6.56 -2.39 -0.02 0.78 16 31 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.07 1.58 7.19 -2.39 -0.02 1.56 16 36 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 37 H 0.08 2.45 8.07 -2.39 -0.02 2.43 16 38 H 0.11 2.38 3.13 -2.39 -0.01 2.38 16 39 H 0.03 1.46 8.07 -2.39 -0.02 1.44 16 40 H -0.01 -0.51 7.42 -2.38 -0.02 -0.52 16 41 H 0.27 15.29 8.31 -92.72 -0.77 14.52 16 42 H 0.14 2.30 8.14 -2.39 -0.02 2.28 16 43 H 0.10 2.56 6.57 -2.39 -0.02 2.54 16 44 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 45 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 46 H 0.16 2.69 8.06 -2.91 -0.02 2.67 16 47 H 0.13 3.65 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -81.25 379.90 5.44 -75.81 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 0.95 Total: 17.94 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: 4.77 Total: -12.32 kcal Atomic # 7 Polarization: -82.12 SS G_CDS: -1.74 Total: -83.86 kcal Atomic # 8 Polarization: -44.33 SS G_CDS: -0.56 Total: -44.89 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -81.25 5.44 -75.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264097136.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.629 kcal (2) G-P(sol) polarization free energy of solvation -81.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds