Wall clock time and date at job start Tue Mar 31 2020 11:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47571 * 2 1 4 4 C 1.53003 * 109.47206 * 239.99922 * 2 1 3 5 5 C 1.53004 * 109.47200 * 120.00357 * 2 1 3 6 6 N 1.46501 * 109.47152 * 54.97404 * 5 2 1 7 7 C 1.46501 * 119.99806 * 269.19576 * 6 5 2 8 8 C 1.50699 * 109.46929 * 270.00178 * 7 6 5 9 9 H 1.08001 * 120.00477 * 359.97438 * 8 7 6 10 10 C 1.37881 * 119.99758 * 180.02562 * 8 7 6 11 11 N 1.31512 * 120.00182 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 120.00109 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46868 * 89.99904 * 12 10 8 14 14 H 1.48493 * 109.47305 * 210.00205 * 12 10 8 15 15 H 1.48502 * 109.46929 * 330.00177 * 12 10 8 16 16 C 1.34774 * 119.99623 * 89.19743 * 6 5 2 17 17 O 1.21276 * 120.00451 * 5.16112 * 16 6 5 18 18 C 1.50706 * 119.99266 * 185.15762 * 16 6 5 19 19 H 1.08997 * 110.66954 * 53.29829 * 18 16 6 20 20 C 1.54704 * 110.75245 * 290.07302 * 18 16 6 21 21 C 1.51640 * 101.92247 * 216.37184 * 20 18 16 22 22 C 1.37746 * 132.17497 * 195.77695 * 21 20 18 23 23 C 1.38351 * 119.97885 * 179.70207 * 22 21 20 24 24 C 1.38281 * 119.76451 * 359.43203 * 23 22 21 25 25 C 1.37939 * 120.35149 * 0.63225 * 24 23 22 26 26 C 1.38880 * 107.04132 * 15.47263 * 21 20 18 27 27 O 1.36138 * 111.23794 * 0.94256 * 26 21 20 28 28 H 1.08998 * 109.46925 * 299.99707 * 1 2 3 29 29 H 1.08998 * 109.47398 * 59.99690 * 1 2 3 30 30 H 1.09005 * 109.47401 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47226 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47012 * 300.00546 * 3 2 1 33 33 H 1.09000 * 109.47164 * 59.99863 * 3 2 1 34 34 H 1.09000 * 109.47345 * 305.24685 * 4 2 1 35 35 H 1.09002 * 109.47187 * 65.23874 * 4 2 1 36 36 H 1.08995 * 109.47717 * 185.24044 * 4 2 1 37 37 H 1.09002 * 109.46994 * 294.97249 * 5 2 1 38 38 H 1.08998 * 109.47073 * 174.97616 * 5 2 1 39 39 H 1.08999 * 109.47209 * 30.00027 * 7 6 5 40 40 H 1.09004 * 109.46946 * 150.00396 * 7 6 5 41 41 H 0.96994 * 120.00372 * 180.02562 * 11 10 8 42 42 H 1.09006 * 110.93608 * 98.21491 * 20 18 16 43 43 H 1.08997 * 110.97050 * 334.54733 * 20 18 16 44 44 H 1.07996 * 120.00789 * 359.43192 * 22 21 20 45 45 H 1.08002 * 120.11255 * 179.63108 * 23 22 21 46 46 H 1.08001 * 119.82585 * 180.40018 * 24 23 22 47 47 H 1.08002 * 119.87622 * 179.81275 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2492 6 7 1.4553 -2.0632 1.3112 7 6 0.1924 -2.2799 2.0213 8 6 0.4775 -2.6116 3.4634 9 1 1.4975 -2.6570 3.8157 10 6 -0.5637 -2.8583 4.3329 11 7 -1.8056 -2.8045 3.9037 12 14 -0.2103 -3.2702 6.1204 13 1 -0.1686 -2.0183 6.9179 14 1 -1.2804 -4.1560 6.6451 15 1 1.0990 -3.9638 6.2189 16 6 2.0794 -3.0983 0.7149 17 8 3.1696 -2.9386 0.2081 18 6 1.4225 -4.4541 0.6781 19 1 0.4175 -4.3835 0.2621 20 6 1.3882 -5.0851 2.0902 21 6 1.6165 -6.5525 1.7832 22 6 1.4282 -7.6939 2.5310 23 6 1.7197 -8.9324 1.9874 24 6 2.1884 -9.0192 0.6893 25 6 2.3789 -7.8774 -0.0608 26 6 2.0971 -6.6262 0.4823 27 8 2.2221 -5.3874 -0.0681 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6020 -1.7182 -1.2975 35 1 1.7553 -0.1561 -2.1368 36 1 3.1259 -0.8033 -1.2036 37 1 1.7520 -0.1582 2.1370 38 1 3.1262 -0.7999 1.2053 39 1 -0.4134 -1.3752 1.9696 40 1 -0.3477 -3.1058 1.5584 41 1 -2.5382 -2.9776 4.5154 42 1 0.4174 -4.9322 2.5617 43 1 2.1890 -4.6885 2.7143 44 1 1.0573 -7.6218 3.5427 45 1 1.5785 -9.8283 2.5738 46 1 2.4101 -9.9859 0.2618 47 1 2.7482 -7.9539 -1.0728 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264172539.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:38 Heat of formation + Delta-G solvation = -49.637596 kcal Electronic energy + Delta-G solvation = -28062.876198 eV Core-core repulsion = 24403.804030 eV Total energy + Delta-G solvation = -3659.072168 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.01823 -39.30993 -37.26126 -36.38865 -34.59852 -32.47255 -32.22036 -29.79251 -29.38498 -27.75233 -26.97794 -26.74529 -25.90838 -23.62253 -22.86079 -21.95809 -21.26503 -19.25231 -18.15469 -17.31900 -16.72320 -16.56442 -16.29145 -15.70419 -15.24624 -14.85601 -14.62799 -14.24438 -13.87907 -13.67214 -13.51555 -13.20776 -12.92008 -12.75307 -12.58263 -12.50590 -12.46274 -12.06213 -11.85452 -11.75602 -11.46337 -11.30135 -11.21673 -11.15371 -10.99439 -10.91420 -10.82948 -10.54126 -10.49008 -10.42458 -10.27119 -10.11378 -9.75775 -9.08075 -8.65371 -8.63070 -7.84432 -7.77195 -6.27845 -4.34697 1.52221 1.59445 3.11823 3.15817 3.22928 3.24532 3.31675 3.89743 4.12753 4.26081 4.81785 4.96532 5.05310 5.12740 5.15486 5.17921 5.21151 5.28545 5.35334 5.48040 5.55036 5.58825 5.82445 5.83874 5.86276 5.90304 6.09246 6.16029 6.17802 6.20718 6.27248 6.33277 6.36649 6.45975 6.51159 6.52551 6.55778 6.62620 6.64666 6.73595 6.75145 6.80761 6.84943 7.07660 7.40481 7.50337 7.66979 7.94743 8.19993 8.68316 8.88872 9.32190 10.78144 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009745 B = 0.005987 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2872.703102 B = 4676.039362 C = 7018.774788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.086 4.086 3 C -0.136 4.136 4 C -0.129 4.129 5 C 0.132 3.868 6 N -0.585 5.585 7 C 0.229 3.771 8 C -0.537 4.537 9 H 0.062 0.938 10 C 0.068 3.932 11 N -0.888 5.888 12 Si 0.890 3.110 13 H -0.279 1.279 14 H -0.284 1.284 15 H -0.272 1.272 16 C 0.523 3.477 17 O -0.548 6.548 18 C 0.071 3.929 19 H 0.106 0.894 20 C -0.086 4.086 21 C -0.164 4.164 22 C -0.070 4.070 23 C -0.155 4.155 24 C -0.094 4.094 25 C -0.143 4.143 26 C 0.106 3.894 27 O -0.283 6.283 28 H 0.057 0.943 29 H 0.044 0.956 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.042 0.958 36 H 0.058 0.942 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.048 0.952 40 H 0.034 0.966 41 H 0.266 0.734 42 H 0.124 0.876 43 H 0.094 0.906 44 H 0.125 0.875 45 H 0.123 0.877 46 H 0.126 0.874 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.113 -3.247 -5.386 7.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.087 4.087 3 C -0.194 4.194 4 C -0.187 4.187 5 C 0.009 3.991 6 N -0.316 5.316 7 C 0.109 3.891 8 C -0.576 4.576 9 H 0.080 0.920 10 C -0.135 4.135 11 N -0.525 5.525 12 Si 0.717 3.283 13 H -0.205 1.205 14 H -0.210 1.210 15 H -0.196 1.196 16 C 0.310 3.690 17 O -0.427 6.427 18 C 0.012 3.988 19 H 0.123 0.877 20 C -0.123 4.123 21 C -0.165 4.165 22 C -0.088 4.088 23 C -0.173 4.173 24 C -0.112 4.112 25 C -0.162 4.162 26 C 0.060 3.940 27 O -0.195 6.195 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.065 0.935 40 H 0.052 0.948 41 H 0.076 0.924 42 H 0.142 0.858 43 H 0.113 0.887 44 H 0.143 0.857 45 H 0.141 0.859 46 H 0.144 0.856 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.596 -3.085 -5.776 7.471 hybrid contribution -0.185 -0.171 1.265 1.290 sum 3.411 -3.257 -4.511 6.526 Atomic orbital electron populations 1.21936 0.94278 1.02459 1.00911 1.20980 0.96299 0.95157 0.96270 1.21782 1.00769 0.95309 1.01503 1.21802 1.01366 0.99691 0.95822 1.21391 0.98273 0.82640 0.96842 1.48023 1.25533 1.06295 1.51767 1.19669 0.79626 0.98488 0.91279 1.21477 0.93386 1.48757 0.93978 0.91961 1.24889 0.94843 0.95087 0.98717 1.69905 0.98432 1.48409 1.35800 0.86611 0.78258 0.78602 0.84814 1.20485 1.21013 1.19628 1.19734 0.85408 0.85102 0.78790 1.90637 1.20365 1.84234 1.47462 1.23140 0.94204 0.88834 0.92636 0.87663 1.21872 1.06888 0.88218 0.95336 1.21112 1.04407 0.96392 0.94542 1.20350 0.98168 0.90739 0.99584 1.20970 1.03199 0.97135 0.95988 1.20764 0.98917 0.97243 0.94240 1.20175 1.06498 0.88669 1.00817 1.19688 0.96076 0.86446 0.91769 1.86873 1.64929 1.14493 1.53253 0.92442 0.93677 0.91857 0.92826 0.92863 0.92610 0.93070 0.93865 0.92323 0.90217 0.90911 0.93451 0.94776 0.92408 0.85762 0.88733 0.85748 0.85873 0.85617 0.85799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 7.12 37.15 0.26 -1.87 16 2 C -0.09 -1.31 0.85 -154.51 -0.13 -1.44 16 3 C -0.14 -1.73 8.47 37.16 0.31 -1.41 16 4 C -0.13 -2.06 7.16 37.16 0.27 -1.80 16 5 C 0.13 2.33 4.61 -4.04 -0.02 2.31 16 6 N -0.59 -11.52 1.95 -175.05 -0.34 -11.86 16 7 C 0.23 4.92 3.48 -5.19 -0.02 4.91 16 8 C -0.54 -12.67 6.80 -34.44 -0.23 -12.90 16 9 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 10 C 0.07 1.66 5.46 -17.82 -0.10 1.57 16 11 N -0.89 -22.69 13.29 55.43 0.74 -21.96 16 12 Si 0.89 19.41 29.54 -169.99 -5.02 14.39 16 13 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 14 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 15 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 16 C 0.52 10.84 5.49 -10.98 -0.06 10.78 16 17 O -0.55 -12.50 14.58 -13.48 -0.20 -12.70 16 18 C 0.07 1.39 3.06 -26.98 -0.08 1.30 16 19 H 0.11 1.95 7.27 -51.93 -0.38 1.57 16 20 C -0.09 -1.66 4.70 -26.52 -0.12 -1.78 16 21 C -0.16 -2.91 6.27 -104.10 -0.65 -3.56 16 22 C -0.07 -1.08 10.03 -39.72 -0.40 -1.47 16 23 C -0.15 -2.01 10.07 -39.52 -0.40 -2.41 16 24 C -0.09 -1.19 10.02 -39.68 -0.40 -1.58 16 25 C -0.14 -2.13 10.06 -39.30 -0.40 -2.52 16 26 C 0.11 1.90 7.04 -38.96 -0.27 1.63 16 27 O -0.28 -5.68 10.39 -39.22 -0.41 -6.08 16 28 H 0.06 0.90 7.84 -51.93 -0.41 0.49 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 1.08 6.18 -51.93 -0.32 0.76 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.91 6.54 -51.93 -0.34 0.57 16 35 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.99 7.80 -51.93 -0.41 0.58 16 37 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 38 H 0.07 1.33 7.38 -51.93 -0.38 0.95 16 39 H 0.05 1.06 6.13 -51.93 -0.32 0.75 16 40 H 0.03 0.76 5.83 -51.93 -0.30 0.46 16 41 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 42 H 0.12 2.54 6.50 -51.93 -0.34 2.20 16 43 H 0.09 1.94 7.80 -51.93 -0.40 1.53 16 44 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 45 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 46 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 47 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 368.16 15.07 5.55 5.55 Total: -1.00 -27.18 368.16 -9.49 -36.67 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -7.37 Total: 6.26 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: -2.44 Total: -10.26 kcal Atomic # 7 Polarization: -34.21 SS G_CDS: 0.40 Total: -33.82 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.60 Total: -18.78 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.39 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -27.18 -9.49 -36.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264172539.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.968 kcal (2) G-P(sol) polarization free energy of solvation -27.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds