Wall clock time and date at job start Tue Mar 31 2020 11:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47571 * 2 1 4 4 C 1.53003 * 109.47206 * 239.99922 * 2 1 3 5 5 C 1.53004 * 109.47200 * 120.00357 * 2 1 3 6 6 N 1.46501 * 109.47152 * 54.97404 * 5 2 1 7 7 C 1.46501 * 119.99806 * 269.19576 * 6 5 2 8 8 C 1.50699 * 109.46929 * 270.00178 * 7 6 5 9 9 H 1.08001 * 120.00477 * 359.97438 * 8 7 6 10 10 C 1.37881 * 119.99758 * 180.02562 * 8 7 6 11 11 N 1.31512 * 120.00182 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 120.00109 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46868 * 89.99904 * 12 10 8 14 14 H 1.48493 * 109.47305 * 210.00205 * 12 10 8 15 15 H 1.48502 * 109.46929 * 330.00177 * 12 10 8 16 16 C 1.34774 * 119.99623 * 89.19743 * 6 5 2 17 17 O 1.21276 * 120.00451 * 5.16112 * 16 6 5 18 18 C 1.50706 * 119.99266 * 185.15762 * 16 6 5 19 19 H 1.08997 * 110.66954 * 53.29829 * 18 16 6 20 20 C 1.54704 * 110.75245 * 290.07302 * 18 16 6 21 21 C 1.51640 * 101.92247 * 216.37184 * 20 18 16 22 22 C 1.37746 * 132.17497 * 195.77695 * 21 20 18 23 23 C 1.38351 * 119.97885 * 179.70207 * 22 21 20 24 24 C 1.38281 * 119.76451 * 359.43203 * 23 22 21 25 25 C 1.37939 * 120.35149 * 0.63225 * 24 23 22 26 26 C 1.38880 * 107.04132 * 15.47263 * 21 20 18 27 27 O 1.36138 * 111.23794 * 0.94256 * 26 21 20 28 28 H 1.08998 * 109.46925 * 299.99707 * 1 2 3 29 29 H 1.08998 * 109.47398 * 59.99690 * 1 2 3 30 30 H 1.09005 * 109.47401 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47226 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47012 * 300.00546 * 3 2 1 33 33 H 1.09000 * 109.47164 * 59.99863 * 3 2 1 34 34 H 1.09000 * 109.47345 * 305.24685 * 4 2 1 35 35 H 1.09002 * 109.47187 * 65.23874 * 4 2 1 36 36 H 1.08995 * 109.47717 * 185.24044 * 4 2 1 37 37 H 1.09002 * 109.46994 * 294.97249 * 5 2 1 38 38 H 1.08998 * 109.47073 * 174.97616 * 5 2 1 39 39 H 1.08999 * 109.47209 * 30.00027 * 7 6 5 40 40 H 1.09004 * 109.46946 * 150.00396 * 7 6 5 41 41 H 0.96994 * 120.00372 * 180.02562 * 11 10 8 42 42 H 1.09006 * 110.93608 * 98.21491 * 20 18 16 43 43 H 1.08997 * 110.97050 * 334.54733 * 20 18 16 44 44 H 1.07996 * 120.00789 * 359.43192 * 22 21 20 45 45 H 1.08002 * 120.11255 * 179.63108 * 23 22 21 46 46 H 1.08001 * 119.82585 * 180.40018 * 24 23 22 47 47 H 1.08002 * 119.87622 * 179.81275 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2492 6 7 1.4553 -2.0632 1.3112 7 6 0.1924 -2.2799 2.0213 8 6 0.4775 -2.6116 3.4634 9 1 1.4975 -2.6570 3.8157 10 6 -0.5637 -2.8583 4.3329 11 7 -1.8056 -2.8045 3.9037 12 14 -0.2103 -3.2702 6.1204 13 1 -0.1686 -2.0183 6.9179 14 1 -1.2804 -4.1560 6.6451 15 1 1.0990 -3.9638 6.2189 16 6 2.0794 -3.0983 0.7149 17 8 3.1696 -2.9386 0.2081 18 6 1.4225 -4.4541 0.6781 19 1 0.4175 -4.3835 0.2621 20 6 1.3882 -5.0851 2.0902 21 6 1.6165 -6.5525 1.7832 22 6 1.4282 -7.6939 2.5310 23 6 1.7197 -8.9324 1.9874 24 6 2.1884 -9.0192 0.6893 25 6 2.3789 -7.8774 -0.0608 26 6 2.0971 -6.6262 0.4823 27 8 2.2221 -5.3874 -0.0681 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6020 -1.7182 -1.2975 35 1 1.7553 -0.1561 -2.1368 36 1 3.1259 -0.8033 -1.2036 37 1 1.7520 -0.1582 2.1370 38 1 3.1262 -0.7999 1.2053 39 1 -0.4134 -1.3752 1.9696 40 1 -0.3477 -3.1058 1.5584 41 1 -2.5382 -2.9776 4.5154 42 1 0.4174 -4.9322 2.5617 43 1 2.1890 -4.6885 2.7143 44 1 1.0573 -7.6218 3.5427 45 1 1.5785 -9.8283 2.5738 46 1 2.4101 -9.9859 0.2618 47 1 2.7482 -7.9539 -1.0728 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264172539.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:38 Heat of formation + Delta-G solvation = -61.143872 kcal Electronic energy + Delta-G solvation = -28063.375147 eV Core-core repulsion = 24403.804030 eV Total energy + Delta-G solvation = -3659.571117 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.44748 -40.82193 -38.54310 -37.83065 -36.26496 -34.31040 -33.59255 -31.00733 -30.73970 -29.49247 -28.16517 -28.10083 -27.35609 -25.16909 -24.54846 -23.20803 -22.55777 -20.71725 -19.62485 -18.80794 -18.51616 -17.96994 -17.79591 -17.17339 -16.63104 -16.39837 -16.26857 -15.61062 -15.12991 -15.01957 -14.85591 -14.55680 -14.35898 -14.30468 -14.09014 -13.99381 -13.91977 -13.45588 -13.38092 -13.00130 -12.84701 -12.78506 -12.64001 -12.56631 -12.52738 -12.48007 -12.22621 -12.01425 -11.99218 -11.72843 -11.68423 -11.53745 -11.48211 -10.79551 -10.50043 -9.83991 -9.45468 -9.13399 -8.18625 -6.30188 0.33738 0.40755 1.39715 1.43803 1.49796 1.53723 1.73725 2.39742 2.58385 2.80890 3.11778 3.35503 3.52052 3.77037 3.85242 3.89443 3.92336 4.00676 4.05190 4.22767 4.34515 4.52501 4.55424 4.57231 4.63408 4.73955 4.75403 4.79953 4.86109 4.92328 4.93680 5.00734 5.04781 5.06182 5.10515 5.20791 5.21586 5.31270 5.39211 5.46711 5.48801 5.50857 5.54844 5.62132 5.70389 5.84368 6.06928 6.19082 6.47668 6.79267 7.19234 7.40011 8.86555 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009745 B = 0.005987 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2872.703102 B = 4676.039362 C = 7018.774788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.081 4.081 3 C -0.130 4.130 4 C -0.122 4.122 5 C 0.127 3.873 6 N -0.581 5.581 7 C 0.246 3.754 8 C -0.536 4.536 9 H 0.050 0.950 10 C 0.033 3.967 11 N -0.913 5.913 12 Si 0.941 3.059 13 H -0.278 1.278 14 H -0.281 1.281 15 H -0.272 1.272 16 C 0.522 3.478 17 O -0.572 6.572 18 C 0.073 3.927 19 H 0.108 0.892 20 C -0.073 4.073 21 C -0.188 4.188 22 C -0.082 4.082 23 C -0.142 4.142 24 C -0.081 4.081 25 C -0.145 4.145 26 C 0.070 3.930 27 O -0.304 6.304 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.039 0.961 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.024 0.976 35 H 0.066 0.934 36 H 0.045 0.955 37 H 0.080 0.920 38 H 0.064 0.936 39 H 0.041 0.959 40 H 0.024 0.976 41 H 0.267 0.733 42 H 0.106 0.894 43 H 0.072 0.928 44 H 0.133 0.867 45 H 0.162 0.838 46 H 0.170 0.830 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.292 -4.598 -5.464 7.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.082 4.082 3 C -0.188 4.188 4 C -0.179 4.179 5 C 0.004 3.996 6 N -0.311 5.311 7 C 0.126 3.874 8 C -0.575 4.575 9 H 0.068 0.932 10 C -0.168 4.168 11 N -0.552 5.552 12 Si 0.767 3.233 13 H -0.204 1.204 14 H -0.206 1.206 15 H -0.197 1.197 16 C 0.309 3.691 17 O -0.453 6.453 18 C 0.014 3.986 19 H 0.126 0.874 20 C -0.111 4.111 21 C -0.189 4.189 22 C -0.100 4.100 23 C -0.160 4.160 24 C -0.098 4.098 25 C -0.163 4.163 26 C 0.026 3.974 27 O -0.218 6.218 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.043 0.957 35 H 0.085 0.915 36 H 0.064 0.936 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.059 0.941 40 H 0.042 0.958 41 H 0.077 0.923 42 H 0.124 0.876 43 H 0.090 0.910 44 H 0.151 0.849 45 H 0.179 0.821 46 H 0.188 0.812 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.776 -4.429 -5.848 8.251 hybrid contribution -0.215 0.137 1.270 1.295 sum 3.561 -4.293 -4.578 7.216 Atomic orbital electron populations 1.21870 0.94176 1.01205 1.01823 1.20954 0.96250 0.96575 0.94463 1.21738 1.01070 0.93144 1.02798 1.21718 1.00263 0.98733 0.97201 1.21576 0.97770 0.81807 0.98409 1.47997 1.24856 1.07122 1.51126 1.19360 0.80054 0.97593 0.90437 1.21547 0.92726 1.48279 0.94907 0.93159 1.25416 0.94675 0.95064 1.01627 1.69980 0.99003 1.49410 1.36816 0.85813 0.77962 0.78308 0.81233 1.20357 1.20629 1.19707 1.19952 0.85131 0.85654 0.78382 1.90604 1.21383 1.84692 1.48661 1.23056 0.94189 0.88416 0.92981 0.87418 1.21562 1.04837 0.90128 0.94549 1.21102 1.06590 0.95918 0.95315 1.20650 0.98324 0.91005 0.99996 1.21450 1.00878 0.97269 0.96364 1.21302 0.96615 0.98150 0.93768 1.20602 1.05742 0.88026 1.01960 1.20093 0.98438 0.86604 0.92314 1.86817 1.65487 1.15666 1.53801 0.92763 0.91452 0.94198 0.92382 0.90986 0.91905 0.95651 0.91459 0.93595 0.90193 0.91749 0.94122 0.95771 0.92345 0.87581 0.90989 0.84894 0.82060 0.81238 0.84120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.06 7.12 71.98 0.51 -3.55 16 2 C -0.08 -2.46 0.85 -52.18 -0.04 -2.51 16 3 C -0.13 -3.07 8.47 71.98 0.61 -2.46 16 4 C -0.12 -3.89 7.16 71.98 0.52 -3.37 16 5 C 0.13 4.60 4.61 86.38 0.40 5.00 16 6 N -0.58 -23.96 1.95 -826.14 -1.61 -25.57 16 7 C 0.25 11.03 3.48 85.63 0.30 11.33 16 8 C -0.54 -26.07 6.80 25.60 0.17 -25.89 16 9 H 0.05 2.54 7.81 -2.91 -0.02 2.52 16 10 C 0.03 1.65 5.46 84.66 0.46 2.11 16 11 N -0.91 -47.37 13.29 21.45 0.28 -47.09 16 12 Si 0.94 40.09 29.54 68.60 2.03 42.12 16 13 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 14 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 15 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 16 C 0.52 22.82 5.49 87.66 0.48 23.30 16 17 O -0.57 -27.37 14.58 15.19 0.22 -27.15 16 18 C 0.07 3.02 3.06 30.43 0.09 3.11 16 19 H 0.11 4.29 7.27 -2.39 -0.02 4.28 16 20 C -0.07 -3.00 4.70 30.73 0.14 -2.85 16 21 C -0.19 -6.83 6.27 -19.53 -0.12 -6.95 16 22 C -0.08 -2.41 10.03 22.18 0.22 -2.18 16 23 C -0.14 -3.18 10.07 22.31 0.22 -2.96 16 24 C -0.08 -1.73 10.02 22.21 0.22 -1.51 16 25 C -0.14 -4.06 10.06 22.45 0.23 -3.83 16 26 C 0.07 2.56 7.04 22.67 0.16 2.72 16 27 O -0.30 -12.77 10.39 -76.92 -0.80 -13.57 16 28 H 0.05 1.67 7.84 -2.39 -0.02 1.65 16 29 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.04 1.39 6.18 -2.38 -0.01 1.37 16 31 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.02 0.91 6.54 -2.39 -0.02 0.90 16 35 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.04 1.56 7.80 -2.39 -0.02 1.54 16 37 H 0.08 2.86 8.07 -2.39 -0.02 2.84 16 38 H 0.06 2.44 7.38 -2.39 -0.02 2.42 16 39 H 0.04 1.89 6.13 -2.39 -0.01 1.88 16 40 H 0.02 1.14 5.83 -2.39 -0.01 1.13 16 41 H 0.27 13.29 8.31 -92.71 -0.77 12.52 16 42 H 0.11 4.62 6.50 -2.38 -0.02 4.60 16 43 H 0.07 3.17 7.80 -2.39 -0.02 3.15 16 44 H 0.13 3.58 8.06 -2.91 -0.02 3.55 16 45 H 0.16 2.42 8.06 -2.91 -0.02 2.39 16 46 H 0.17 2.20 8.06 -2.91 -0.02 2.18 16 47 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -60.46 368.16 5.66 -54.80 By element: Atomic # 1 Polarization: 25.99 SS G_CDS: 0.95 Total: 26.95 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: 4.58 Total: -10.50 kcal Atomic # 7 Polarization: -71.33 SS G_CDS: -1.32 Total: -72.65 kcal Atomic # 8 Polarization: -40.14 SS G_CDS: -0.58 Total: -40.71 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 2.03 Total: 42.12 kcal Total: -60.46 5.66 -54.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264172539.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.341 kcal (2) G-P(sol) polarization free energy of solvation -60.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds