Wall clock time and date at job start Tue Mar 31 2020 11:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47040 * 2 1 4 4 C 1.52999 * 109.46848 * 240.00159 * 2 1 3 5 5 C 1.52996 * 109.47157 * 119.99929 * 2 1 3 6 6 N 1.46496 * 109.47280 * 57.59527 * 5 2 1 7 7 C 1.46500 * 119.99983 * 276.46191 * 6 5 2 8 8 C 1.50698 * 109.47056 * 269.99756 * 7 6 5 9 9 H 1.07996 * 120.00208 * 359.97438 * 8 7 6 10 10 C 1.37877 * 119.99966 * 179.97438 * 8 7 6 11 11 N 1.31519 * 119.99907 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00000 * 179.97438 * 10 8 7 13 13 H 1.48493 * 109.47218 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.46764 * 120.00344 * 12 10 8 15 15 H 1.48495 * 109.47050 * 240.00084 * 12 10 8 16 16 C 1.34782 * 119.99927 * 96.45694 * 6 5 2 17 17 O 1.21282 * 119.99697 * 177.28985 * 16 6 5 18 18 C 1.50697 * 120.00072 * 357.01793 * 16 6 5 19 19 H 1.09000 * 110.66703 * 309.66646 * 18 16 6 20 20 C 1.54703 * 110.74913 * 72.88567 * 18 16 6 21 21 C 1.51648 * 101.92680 * 143.60536 * 20 18 16 22 22 C 1.37750 * 132.17738 * 164.59589 * 21 20 18 23 23 C 1.38352 * 119.97492 * 180.40172 * 22 21 20 24 24 C 1.38288 * 119.76994 * 359.95402 * 23 22 21 25 25 C 1.37932 * 120.35206 * 359.86817 * 24 23 22 26 26 C 1.38884 * 107.03894 * 344.62462 * 21 20 18 27 27 O 1.36381 * 111.32122 * 359.06977 * 26 21 20 28 28 H 1.09009 * 109.46967 * 299.99912 * 1 2 3 29 29 H 1.09001 * 109.47596 * 59.99656 * 1 2 3 30 30 H 1.08996 * 109.47178 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47219 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47337 * 299.99808 * 3 2 1 33 33 H 1.08993 * 109.47507 * 60.00131 * 3 2 1 34 34 H 1.08995 * 109.47218 * 293.82355 * 4 2 1 35 35 H 1.09000 * 109.47083 * 53.82371 * 4 2 1 36 36 H 1.08998 * 109.47266 * 173.82402 * 4 2 1 37 37 H 1.08999 * 109.47428 * 297.59365 * 5 2 1 38 38 H 1.09005 * 109.46878 * 177.59625 * 5 2 1 39 39 H 1.08997 * 109.46920 * 30.00023 * 7 6 5 40 40 H 1.09004 * 109.47080 * 149.99983 * 7 6 5 41 41 H 0.97001 * 119.99973 * 179.97438 * 11 10 8 42 42 H 1.09003 * 110.94392 * 261.76552 * 20 18 16 43 43 H 1.09005 * 110.94151 * 25.41435 * 20 18 16 44 44 H 1.07993 * 120.00918 * 0.36082 * 22 21 20 45 45 H 1.07996 * 120.11440 * 179.97438 * 23 22 21 46 46 H 1.08000 * 119.82605 * 179.85991 * 24 23 22 47 47 H 1.07991 * 119.88454 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2492 6 7 1.5050 -2.0847 1.2786 7 6 0.1650 -2.3343 1.8157 8 6 0.2598 -2.6095 3.2943 9 1 1.2219 -2.5999 3.7848 10 6 -0.8818 -2.8736 4.0209 11 7 -2.0534 -2.8858 3.4235 12 14 -0.7643 -3.2155 5.8536 13 1 0.6561 -3.1438 6.2804 14 1 -1.5561 -2.2032 6.5976 15 1 -1.2998 -4.5707 6.1396 16 6 2.2454 -3.1094 0.8114 17 8 1.8227 -4.2440 0.8807 18 6 3.5959 -2.8446 0.1974 19 1 3.5285 -2.0608 -0.5571 20 6 4.6291 -2.4699 1.2861 21 6 5.8901 -3.1292 0.7617 22 6 7.2197 -2.9711 1.0854 23 6 8.1842 -3.7134 0.4276 24 6 7.8080 -4.6130 -0.5530 25 6 6.4770 -4.7756 -0.8761 26 6 5.4994 -4.0343 -0.2166 27 8 4.1440 -4.0483 -0.3663 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.7697 -1.7758 -1.1957 35 1 1.5891 -0.2752 -2.1358 36 1 3.1243 -0.6265 -1.3063 37 1 1.7124 -0.1831 2.1387 38 1 3.1292 -0.7587 1.2279 39 1 -0.4623 -1.4588 1.6485 40 1 -0.2731 -3.1966 1.3130 41 1 -2.8566 -3.0720 3.9346 42 1 4.7526 -1.3888 1.3505 43 1 4.3446 -2.8858 2.2528 44 1 7.5090 -2.2675 1.8519 45 1 9.2273 -3.5910 0.6793 46 1 8.5604 -5.1913 -1.0686 47 1 6.1917 -5.4799 -1.6434 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264172540.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:42 Heat of formation + Delta-G solvation = -34.856915 kcal Electronic energy + Delta-G solvation = -27893.157619 eV Core-core repulsion = 24234.726390 eV Total energy + Delta-G solvation = -3658.431229 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.34342 -39.35369 -37.45407 -36.83583 -33.91983 -32.96327 -32.25697 -30.07621 -29.95536 -27.67156 -27.33080 -26.85369 -25.73354 -24.23293 -22.63096 -22.09139 -21.65575 -19.43313 -18.36125 -17.58997 -16.93579 -16.62094 -16.38193 -15.93710 -15.31290 -14.87793 -14.55351 -14.32965 -14.17043 -13.87956 -13.65895 -13.40456 -13.25892 -13.15653 -12.90268 -12.66058 -12.46049 -12.18972 -12.02158 -11.85374 -11.74296 -11.45929 -11.33833 -11.28843 -11.05045 -10.93971 -10.86612 -10.74332 -10.62625 -10.42347 -10.19848 -10.13809 -9.56471 -8.98217 -8.94918 -8.43246 -8.12183 -7.70224 -6.06016 -4.10011 1.21705 1.32748 2.95862 3.24646 3.28613 3.37053 3.41375 3.63319 3.96941 4.38628 4.44027 4.56256 4.79914 4.88958 4.90967 4.95033 4.96674 5.12364 5.16646 5.22032 5.28921 5.31569 5.44056 5.52692 5.63952 5.66824 5.70560 5.76910 5.87115 5.90831 5.98951 6.08894 6.10865 6.16850 6.22592 6.24004 6.36324 6.37062 6.39091 6.50155 6.55484 6.72457 7.01783 7.19849 7.39022 7.49388 7.90048 8.21482 8.29886 8.84994 8.99878 9.54634 11.01958 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012167 B = 0.004486 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.772543 B = 6240.313529 C = 7516.160298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.088 4.088 3 C -0.137 4.137 4 C -0.150 4.150 5 C 0.110 3.890 6 N -0.584 5.584 7 C 0.239 3.761 8 C -0.526 4.526 9 H 0.057 0.943 10 C 0.062 3.938 11 N -0.894 5.894 12 Si 0.896 3.104 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.283 1.283 16 C 0.510 3.490 17 O -0.516 6.516 18 C 0.046 3.954 19 H 0.120 0.880 20 C -0.100 4.100 21 C -0.172 4.172 22 C -0.069 4.069 23 C -0.155 4.155 24 C -0.087 4.087 25 C -0.141 4.141 26 C 0.112 3.888 27 O -0.274 6.274 28 H 0.059 0.941 29 H 0.045 0.955 30 H 0.073 0.927 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.051 0.949 40 H 0.041 0.959 41 H 0.263 0.737 42 H 0.100 0.900 43 H 0.098 0.902 44 H 0.124 0.876 45 H 0.126 0.874 46 H 0.129 0.871 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.768 7.216 -8.791 20.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.089 4.089 3 C -0.195 4.195 4 C -0.207 4.207 5 C -0.014 4.014 6 N -0.317 5.317 7 C 0.120 3.880 8 C -0.565 4.565 9 H 0.075 0.925 10 C -0.140 4.140 11 N -0.533 5.533 12 Si 0.724 3.276 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.209 1.209 16 C 0.294 3.706 17 O -0.392 6.392 18 C -0.014 4.014 19 H 0.137 0.863 20 C -0.137 4.137 21 C -0.173 4.173 22 C -0.087 4.087 23 C -0.173 4.173 24 C -0.105 4.105 25 C -0.159 4.159 26 C 0.066 3.934 27 O -0.187 6.187 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.092 0.908 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.104 0.896 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.072 0.928 42 H 0.118 0.882 43 H 0.117 0.883 44 H 0.142 0.858 45 H 0.144 0.856 46 H 0.147 0.853 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 16.143 6.395 -8.805 19.469 hybrid contribution -0.031 -0.061 1.181 1.183 sum 16.112 6.334 -7.624 18.917 Atomic orbital electron populations 1.22077 0.93585 1.03468 1.01110 1.21006 0.97235 0.95158 0.95494 1.21810 1.00465 0.95261 1.01981 1.22127 0.99796 1.01199 0.97564 1.21763 0.97816 0.83882 0.97974 1.48080 1.18817 1.04967 1.59802 1.19592 0.76307 0.98343 0.93710 1.21467 0.93356 1.48323 0.93322 0.92485 1.24905 0.95198 0.95207 0.98677 1.69933 0.97948 1.49376 1.36032 0.86473 0.78064 0.77982 0.85091 1.19855 1.20983 1.20894 1.19705 0.85127 0.85942 0.79801 1.90727 1.71200 1.21347 1.55887 1.23907 0.94112 0.86848 0.96488 0.86316 1.21821 0.90244 1.01920 0.99704 1.20793 0.95091 1.02050 0.99333 1.20296 0.90530 0.98896 0.98958 1.20987 0.99211 0.98507 0.98610 1.20841 0.94671 0.97769 0.97189 1.20259 0.90798 1.02728 1.02152 1.19773 0.84019 0.95614 0.94029 1.87023 1.15534 1.39610 1.76505 0.92158 0.93574 0.90768 0.92923 0.92629 0.92294 0.92108 0.92351 0.92825 0.89583 0.91343 0.93090 0.94076 0.92777 0.88227 0.88327 0.85771 0.85630 0.85306 0.85412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 7.04 37.16 0.26 -1.92 16 2 C -0.09 -1.15 0.85 -154.51 -0.13 -1.28 16 3 C -0.14 -1.41 8.47 37.16 0.31 -1.10 16 4 C -0.15 -1.88 6.83 37.16 0.25 -1.63 16 5 C 0.11 1.68 4.51 -4.05 -0.02 1.66 16 6 N -0.58 -11.81 1.98 -175.06 -0.35 -12.16 16 7 C 0.24 5.98 3.97 -5.19 -0.02 5.96 16 8 C -0.53 -14.58 9.39 -34.44 -0.32 -14.90 16 9 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 10 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 11 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 12 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 13 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 15 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 16 C 0.51 10.84 5.75 -10.98 -0.06 10.78 16 17 O -0.52 -13.72 16.19 -13.42 -0.22 -13.94 16 18 C 0.05 0.76 2.75 -26.99 -0.07 0.69 16 19 H 0.12 1.68 3.83 -51.93 -0.20 1.48 16 20 C -0.10 -1.42 5.69 -26.52 -0.15 -1.57 16 21 C -0.17 -2.38 6.27 -104.09 -0.65 -3.03 16 22 C -0.07 -0.77 10.03 -39.72 -0.40 -1.17 16 23 C -0.15 -1.54 10.07 -39.52 -0.40 -1.94 16 24 C -0.09 -0.89 10.02 -39.68 -0.40 -1.29 16 25 C -0.14 -1.79 10.06 -39.30 -0.40 -2.19 16 26 C 0.11 1.73 7.04 -38.95 -0.27 1.45 16 27 O -0.27 -5.06 10.42 -39.94 -0.42 -5.48 16 28 H 0.06 0.94 7.92 -51.92 -0.41 0.52 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 1.34 5.59 -51.93 -0.29 1.05 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.92 5.77 -51.93 -0.30 0.62 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.58 6.70 -51.93 -0.35 0.23 16 37 H 0.09 1.37 8.12 -51.93 -0.42 0.94 16 38 H 0.07 0.87 4.33 -51.93 -0.22 0.65 16 39 H 0.05 1.25 5.25 -51.93 -0.27 0.98 16 40 H 0.04 1.19 7.46 -51.93 -0.39 0.80 16 41 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 42 H 0.10 1.10 6.63 -51.93 -0.34 0.75 16 43 H 0.10 1.58 7.92 -51.93 -0.41 1.17 16 44 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 45 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 46 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 47 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 365.49 15.07 5.51 5.51 Total: -1.00 -33.50 365.49 -9.28 -42.78 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -6.96 Total: 1.76 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -2.56 Total: -9.83 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: 0.39 Total: -37.53 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: -0.63 Total: -19.41 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.50 -9.28 -42.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264172540.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.923 kcal (2) G-P(sol) polarization free energy of solvation -33.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds