Wall clock time and date at job start Tue Mar 31 2020 11:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47040 * 2 1 4 4 C 1.52999 * 109.46848 * 240.00159 * 2 1 3 5 5 C 1.52996 * 109.47157 * 119.99929 * 2 1 3 6 6 N 1.46496 * 109.47280 * 57.59527 * 5 2 1 7 7 C 1.46500 * 119.99983 * 276.46191 * 6 5 2 8 8 C 1.50698 * 109.47056 * 269.99756 * 7 6 5 9 9 H 1.07996 * 120.00208 * 359.97438 * 8 7 6 10 10 C 1.37877 * 119.99966 * 179.97438 * 8 7 6 11 11 N 1.31519 * 119.99907 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00000 * 179.97438 * 10 8 7 13 13 H 1.48493 * 109.47218 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.46764 * 120.00344 * 12 10 8 15 15 H 1.48495 * 109.47050 * 240.00084 * 12 10 8 16 16 C 1.34782 * 119.99927 * 96.45694 * 6 5 2 17 17 O 1.21282 * 119.99697 * 177.28985 * 16 6 5 18 18 C 1.50697 * 120.00072 * 357.01793 * 16 6 5 19 19 H 1.09000 * 110.66703 * 309.66646 * 18 16 6 20 20 C 1.54703 * 110.74913 * 72.88567 * 18 16 6 21 21 C 1.51648 * 101.92680 * 143.60536 * 20 18 16 22 22 C 1.37750 * 132.17738 * 164.59589 * 21 20 18 23 23 C 1.38352 * 119.97492 * 180.40172 * 22 21 20 24 24 C 1.38288 * 119.76994 * 359.95402 * 23 22 21 25 25 C 1.37932 * 120.35206 * 359.86817 * 24 23 22 26 26 C 1.38884 * 107.03894 * 344.62462 * 21 20 18 27 27 O 1.36381 * 111.32122 * 359.06977 * 26 21 20 28 28 H 1.09009 * 109.46967 * 299.99912 * 1 2 3 29 29 H 1.09001 * 109.47596 * 59.99656 * 1 2 3 30 30 H 1.08996 * 109.47178 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47219 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47337 * 299.99808 * 3 2 1 33 33 H 1.08993 * 109.47507 * 60.00131 * 3 2 1 34 34 H 1.08995 * 109.47218 * 293.82355 * 4 2 1 35 35 H 1.09000 * 109.47083 * 53.82371 * 4 2 1 36 36 H 1.08998 * 109.47266 * 173.82402 * 4 2 1 37 37 H 1.08999 * 109.47428 * 297.59365 * 5 2 1 38 38 H 1.09005 * 109.46878 * 177.59625 * 5 2 1 39 39 H 1.08997 * 109.46920 * 30.00023 * 7 6 5 40 40 H 1.09004 * 109.47080 * 149.99983 * 7 6 5 41 41 H 0.97001 * 119.99973 * 179.97438 * 11 10 8 42 42 H 1.09003 * 110.94392 * 261.76552 * 20 18 16 43 43 H 1.09005 * 110.94151 * 25.41435 * 20 18 16 44 44 H 1.07993 * 120.00918 * 0.36082 * 22 21 20 45 45 H 1.07996 * 120.11440 * 179.97438 * 23 22 21 46 46 H 1.08000 * 119.82605 * 179.85991 * 24 23 22 47 47 H 1.07991 * 119.88454 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2492 6 7 1.5050 -2.0847 1.2786 7 6 0.1650 -2.3343 1.8157 8 6 0.2598 -2.6095 3.2943 9 1 1.2219 -2.5999 3.7848 10 6 -0.8818 -2.8736 4.0209 11 7 -2.0534 -2.8858 3.4235 12 14 -0.7643 -3.2155 5.8536 13 1 0.6561 -3.1438 6.2804 14 1 -1.5561 -2.2032 6.5976 15 1 -1.2998 -4.5707 6.1396 16 6 2.2454 -3.1094 0.8114 17 8 1.8227 -4.2440 0.8807 18 6 3.5959 -2.8446 0.1974 19 1 3.5285 -2.0608 -0.5571 20 6 4.6291 -2.4699 1.2861 21 6 5.8901 -3.1292 0.7617 22 6 7.2197 -2.9711 1.0854 23 6 8.1842 -3.7134 0.4276 24 6 7.8080 -4.6130 -0.5530 25 6 6.4770 -4.7756 -0.8761 26 6 5.4994 -4.0343 -0.2166 27 8 4.1440 -4.0483 -0.3663 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.7697 -1.7758 -1.1957 35 1 1.5891 -0.2752 -2.1358 36 1 3.1243 -0.6265 -1.3063 37 1 1.7124 -0.1831 2.1387 38 1 3.1292 -0.7587 1.2279 39 1 -0.4623 -1.4588 1.6485 40 1 -0.2731 -3.1966 1.3130 41 1 -2.8566 -3.0720 3.9346 42 1 4.7526 -1.3888 1.3505 43 1 4.3446 -2.8858 2.2528 44 1 7.5090 -2.2675 1.8519 45 1 9.2273 -3.5910 0.6793 46 1 8.5604 -5.1913 -1.0686 47 1 6.1917 -5.4799 -1.6434 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264172540.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:41 Heat of formation + Delta-G solvation = -54.118655 kcal Electronic energy + Delta-G solvation = -27893.992871 eV Core-core repulsion = 24234.726390 eV Total energy + Delta-G solvation = -3659.266481 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.55010 -40.76531 -38.63719 -38.14560 -35.69245 -34.54241 -33.74693 -31.27866 -31.00064 -29.32212 -28.33667 -28.09347 -27.11740 -25.73301 -24.19277 -23.20955 -22.64416 -20.85891 -19.66146 -18.86389 -18.68252 -18.04637 -17.72332 -17.18039 -16.87355 -16.38002 -16.07007 -15.60899 -15.16902 -15.09118 -14.96662 -14.67095 -14.41905 -14.38983 -14.21655 -13.95682 -13.91856 -13.64709 -13.29356 -13.01217 -12.97060 -12.84422 -12.65730 -12.57843 -12.54587 -12.50387 -12.19946 -12.02099 -11.96891 -11.73726 -11.70374 -11.54497 -11.38303 -10.67313 -10.61733 -9.85358 -9.46486 -9.14682 -8.23211 -6.36785 0.31721 0.41183 1.33592 1.36642 1.47374 1.51585 1.76419 2.36223 2.55920 2.78204 3.06516 3.21713 3.35801 3.66722 3.76518 3.82762 3.87375 3.97028 4.07399 4.21544 4.27626 4.37726 4.52679 4.56108 4.57043 4.65630 4.68853 4.72159 4.78640 4.91977 4.92506 5.03880 5.05989 5.08393 5.10240 5.19137 5.21370 5.36614 5.38863 5.42452 5.46029 5.53260 5.55024 5.58117 5.66705 5.82362 6.06609 6.18029 6.61505 6.72100 7.21294 7.37007 8.83889 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012167 B = 0.004486 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.772543 B = 6240.313529 C = 7516.160298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.082 4.082 3 C -0.130 4.130 4 C -0.149 4.149 5 C 0.102 3.898 6 N -0.580 5.580 7 C 0.257 3.743 8 C -0.542 4.542 9 H 0.051 0.949 10 C 0.010 3.990 11 N -0.926 5.926 12 Si 0.963 3.037 13 H -0.268 1.268 14 H -0.266 1.266 15 H -0.285 1.285 16 C 0.502 3.498 17 O -0.588 6.588 18 C 0.057 3.943 19 H 0.147 0.853 20 C -0.094 4.094 21 C -0.182 4.182 22 C -0.069 4.069 23 C -0.143 4.143 24 C -0.081 4.081 25 C -0.153 4.153 26 C 0.067 3.933 27 O -0.314 6.314 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.031 0.969 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.025 0.975 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.101 0.899 39 H 0.054 0.946 40 H -0.013 1.013 41 H 0.266 0.734 42 H 0.138 0.862 43 H 0.073 0.927 44 H 0.152 0.848 45 H 0.163 0.837 46 H 0.163 0.837 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.836 9.657 -8.503 24.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.083 4.083 3 C -0.188 4.188 4 C -0.206 4.206 5 C -0.020 4.020 6 N -0.310 5.310 7 C 0.136 3.864 8 C -0.581 4.581 9 H 0.070 0.930 10 C -0.189 4.189 11 N -0.566 5.566 12 Si 0.788 3.212 13 H -0.192 1.192 14 H -0.191 1.191 15 H -0.211 1.211 16 C 0.289 3.711 17 O -0.468 6.468 18 C -0.002 4.002 19 H 0.163 0.837 20 C -0.131 4.131 21 C -0.183 4.183 22 C -0.087 4.087 23 C -0.161 4.161 24 C -0.099 4.099 25 C -0.171 4.171 26 C 0.022 3.978 27 O -0.228 6.228 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.050 0.950 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.044 0.956 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.119 0.881 39 H 0.072 0.928 40 H 0.005 0.995 41 H 0.075 0.925 42 H 0.156 0.844 43 H 0.092 0.908 44 H 0.170 0.830 45 H 0.181 0.819 46 H 0.181 0.819 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 20.247 8.898 -8.526 23.703 hybrid contribution -1.231 -0.866 1.024 1.820 sum 19.016 8.032 -7.502 21.964 Atomic orbital electron populations 1.22024 0.95564 1.00825 1.01685 1.20984 0.95559 0.97307 0.94459 1.21764 1.01974 0.92268 1.02783 1.22115 1.01597 0.98977 0.97875 1.22148 0.99657 0.81008 0.99197 1.47992 1.17114 1.07212 1.58727 1.19065 0.78923 0.96130 0.92243 1.21756 0.93237 1.48549 0.94569 0.93050 1.25790 0.94799 0.94812 1.03492 1.70051 0.98666 1.50004 1.37897 0.85429 0.78426 0.77875 0.79455 1.19217 1.19132 1.21109 1.20635 0.86723 0.84912 0.78829 1.90671 1.73195 1.24151 1.58802 1.23816 0.91455 0.87204 0.97707 0.83654 1.21804 0.89802 1.04142 0.97379 1.20859 0.95940 1.02157 0.99355 1.20699 0.89368 0.99330 0.99327 1.21497 1.00779 0.96762 0.97073 1.21289 0.93984 0.97616 0.96993 1.20590 0.91631 1.02582 1.02335 1.20194 0.82991 0.98111 0.96481 1.86959 1.17833 1.40689 1.77290 0.93111 0.91414 0.94963 0.90473 0.91234 0.92191 0.95603 0.90725 0.90152 0.90062 0.88061 0.92830 0.99491 0.92460 0.84383 0.90824 0.82991 0.81899 0.81908 0.85139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.42 7.04 71.98 0.51 -3.91 16 2 C -0.08 -2.05 0.85 -52.18 -0.04 -2.10 16 3 C -0.13 -2.21 8.47 71.98 0.61 -1.60 16 4 C -0.15 -3.54 6.83 71.98 0.49 -3.05 16 5 C 0.10 3.07 4.51 86.38 0.39 3.46 16 6 N -0.58 -24.84 1.98 -826.16 -1.64 -26.48 16 7 C 0.26 13.89 3.97 85.63 0.34 14.23 16 8 C -0.54 -31.58 9.39 25.60 0.24 -31.34 16 9 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 10 C 0.01 0.59 5.46 84.65 0.46 1.05 16 11 N -0.93 -56.39 13.29 21.45 0.28 -56.10 16 12 Si 0.96 45.55 29.54 68.60 2.03 47.58 16 13 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 14 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 15 H -0.28 -13.51 7.11 99.48 0.71 -12.81 16 16 C 0.50 22.84 5.75 87.66 0.50 23.35 16 17 O -0.59 -34.24 16.19 15.11 0.24 -34.00 16 18 C 0.06 1.94 2.75 30.43 0.08 2.02 16 19 H 0.15 4.02 3.83 -2.39 -0.01 4.01 16 20 C -0.09 -2.59 5.69 30.73 0.17 -2.42 16 21 C -0.18 -4.76 6.27 -19.52 -0.12 -4.88 16 22 C -0.07 -1.30 10.03 22.18 0.22 -1.08 16 23 C -0.14 -2.19 10.07 22.31 0.22 -1.96 16 24 C -0.08 -1.38 10.02 22.21 0.22 -1.16 16 25 C -0.15 -3.74 10.06 22.45 0.23 -3.51 16 26 C 0.07 2.07 7.04 22.68 0.16 2.23 16 27 O -0.31 -12.19 10.42 -79.78 -0.83 -13.02 16 28 H 0.05 1.62 7.92 -2.38 -0.02 1.60 16 29 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.03 1.24 5.59 -2.39 -0.01 1.23 16 31 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.02 0.79 5.77 -2.39 -0.01 0.78 16 35 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.08 1.47 6.70 -2.39 -0.02 1.46 16 37 H 0.08 2.55 8.12 -2.39 -0.02 2.53 16 38 H 0.10 2.35 4.33 -2.38 -0.01 2.34 16 39 H 0.05 2.84 5.25 -2.39 -0.01 2.83 16 40 H -0.01 -0.84 7.46 -2.38 -0.02 -0.86 16 41 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 42 H 0.14 2.57 6.63 -2.39 -0.02 2.55 16 43 H 0.07 2.39 7.92 -2.38 -0.02 2.37 16 44 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 45 H 0.16 1.32 8.06 -2.91 -0.02 1.29 16 46 H 0.16 1.62 8.06 -2.91 -0.02 1.59 16 47 H 0.13 2.95 8.06 -2.92 -0.02 2.93 16 Total: -1.00 -81.71 365.49 5.75 -75.97 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 0.97 Total: 16.72 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: 4.69 Total: -10.67 kcal Atomic # 7 Polarization: -81.23 SS G_CDS: -1.35 Total: -82.58 kcal Atomic # 8 Polarization: -46.43 SS G_CDS: -0.59 Total: -47.02 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -81.71 5.75 -75.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264172540.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.848 kcal (2) G-P(sol) polarization free energy of solvation -81.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds