Wall clock time and date at job start Tue Mar 31 2020 12:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47334 * 2 1 4 4 C 1.52994 * 109.47185 * 239.99566 * 2 1 3 5 5 H 1.08997 * 109.87496 * 181.23029 * 4 2 1 6 6 C 1.54327 * 109.88384 * 60.05520 * 4 2 1 7 7 C 1.55155 * 102.94508 * 218.39274 * 6 4 2 8 8 C 1.54906 * 101.58346 * 35.49947 * 7 6 4 9 9 N 1.47023 * 109.88405 * 302.24926 * 4 2 1 10 10 C 1.34781 * 125.64637 * 298.32108 * 9 4 2 11 11 O 1.21279 * 119.99683 * 4.95162 * 10 9 4 12 12 C 1.50699 * 119.99970 * 184.94347 * 10 9 4 13 13 C 1.50697 * 109.47020 * 180.02562 * 12 10 9 14 14 C 1.38309 * 119.92979 * 269.72580 * 13 12 10 15 15 C 1.38093 * 120.06525 * 179.72339 * 14 13 12 16 16 C 1.38879 * 119.93585 * 0.55352 * 15 14 13 17 17 O 1.35746 * 120.07353 * 179.74377 * 16 15 14 18 18 C 1.34828 * 117.00233 * 174.45511 * 17 16 15 19 19 H 1.08007 * 120.00026 * 5.07178 * 18 17 16 20 20 C 1.38651 * 120.00356 * 185.06414 * 18 17 16 21 21 N 1.31562 * 119.99668 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00392 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.46649 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47192 * 120.00074 * 22 20 18 25 25 H 1.48494 * 109.47158 * 240.00643 * 22 20 18 26 26 C 1.38882 * 119.85723 * 359.72550 * 16 15 14 27 27 C 1.38097 * 119.93274 * 359.97438 * 26 16 15 28 28 H 1.08999 * 109.47584 * 60.00258 * 1 2 3 29 29 H 1.09002 * 109.47156 * 300.00468 * 1 2 3 30 30 H 1.09003 * 109.47441 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47026 * 119.99226 * 2 1 3 32 32 H 1.08996 * 109.47477 * 55.17313 * 3 2 1 33 33 H 1.08991 * 109.47476 * 175.18470 * 3 2 1 34 34 H 1.09007 * 109.46729 * 295.18098 * 3 2 1 35 35 H 1.09000 * 110.71779 * 336.75320 * 6 4 2 36 36 H 1.08996 * 110.71978 * 100.02616 * 6 4 2 37 37 H 1.09008 * 111.00089 * 277.42538 * 7 6 4 38 38 H 1.08993 * 111.03776 * 153.59239 * 7 6 4 39 39 H 1.09002 * 110.37149 * 204.15366 * 8 7 6 40 40 H 1.08996 * 110.46199 * 81.87715 * 8 7 6 41 41 H 1.09005 * 109.47319 * 300.00657 * 12 10 9 42 42 H 1.09005 * 109.47132 * 60.00008 * 12 10 9 43 43 H 1.07998 * 119.95991 * 0.02562 * 14 13 12 44 44 H 1.08002 * 120.03685 * 180.27223 * 15 14 13 45 45 H 0.96998 * 119.99734 * 179.97438 * 21 20 18 46 46 H 1.07996 * 120.03399 * 179.97438 * 26 16 15 47 47 H 1.08005 * 119.96915 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 1 3.1297 -0.7442 -1.2448 6 6 1.5319 -0.0005 -2.5156 7 6 1.2115 -1.1742 -3.4786 8 6 0.6826 -2.2478 -2.4952 9 7 1.5111 -2.0926 -1.2856 10 6 1.7456 -3.0497 -0.3660 11 8 2.3718 -2.7851 0.6383 12 6 1.2294 -4.4484 -0.5857 13 6 1.6231 -5.3180 0.5804 14 6 2.8208 -6.0092 0.5523 15 6 3.1870 -6.8024 1.6217 16 6 2.3462 -6.9148 2.7212 17 8 2.7010 -7.6978 3.7718 18 6 1.8963 -7.6727 4.8533 19 1 0.9730 -7.1130 4.8266 20 6 2.2540 -8.3656 5.9998 21 7 3.3788 -9.0472 6.0325 22 14 1.1388 -8.3314 7.4980 23 1 -0.0567 -7.5001 7.2062 24 1 0.7107 -9.7145 7.8281 25 1 1.8753 -7.7528 8.6502 26 6 1.1415 -6.2240 2.7439 27 6 0.7838 -5.4274 1.6740 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5137 0.8901 32 1 1.6079 1.9807 0.8435 33 1 3.1265 1.4437 0.0863 34 1 1.7489 1.9308 -0.9301 35 1 0.6327 0.5754 -2.2971 36 1 2.3092 0.6396 -2.9330 37 1 2.1120 -1.5195 -3.9867 38 1 0.4435 -0.8912 -4.1983 39 1 0.8103 -3.2447 -2.9172 40 1 -0.3667 -2.0670 -2.2620 41 1 0.1429 -4.4255 -0.6710 42 1 1.6573 -4.8538 -1.5026 43 1 3.4724 -5.9246 -0.3049 44 1 4.1244 -7.3385 1.6011 45 1 3.6292 -9.5316 6.8347 46 1 0.4853 -6.3096 3.5973 47 1 -0.1531 -4.8903 1.6909 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264641202.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:59 Heat of formation + Delta-G solvation = -46.224980 kcal Electronic energy + Delta-G solvation = -26486.790796 eV Core-core repulsion = 22827.866611 eV Total energy + Delta-G solvation = -3658.924186 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.53223 -38.99874 -37.81791 -36.31020 -34.81341 -32.43195 -31.91390 -30.96336 -30.08381 -28.39934 -27.30707 -26.59422 -25.13836 -23.73424 -22.25967 -21.90720 -20.98761 -19.83050 -18.55065 -17.92082 -17.03602 -16.89801 -16.57420 -15.48743 -15.28302 -14.63177 -14.55141 -14.38020 -14.13841 -13.83534 -13.59625 -13.46506 -13.44843 -13.24551 -13.03114 -12.64442 -12.49992 -12.36493 -12.20128 -12.00759 -11.80304 -11.53747 -11.53217 -11.42237 -11.22290 -11.12765 -10.85443 -10.79036 -10.68900 -10.54316 -10.47833 -10.37623 -9.52742 -9.26165 -8.77063 -8.63839 -8.08352 -7.09665 -6.39537 -3.97903 2.30923 2.32299 2.83219 3.01973 3.16427 3.18034 3.23142 4.01582 4.21425 4.25753 4.53902 4.61209 4.75706 4.89268 4.94102 5.02160 5.08791 5.14406 5.17218 5.24625 5.31785 5.37896 5.39145 5.43101 5.44896 5.47269 5.58234 5.67273 5.71670 5.72506 5.79209 5.82145 5.90764 5.91469 5.98794 6.12150 6.22326 6.28303 6.45159 6.48527 6.77020 6.98209 7.12123 7.30751 7.43936 7.50402 7.55561 7.90709 8.06154 8.37927 9.06461 9.77642 10.78858 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021487 B = 0.002669 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.810315 B =10487.015970 C =11123.807656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.112 4.112 3 C -0.144 4.144 4 C 0.144 3.856 5 H 0.071 0.929 6 C -0.132 4.132 7 C -0.134 4.134 8 C 0.100 3.900 9 N -0.623 5.623 10 C 0.526 3.474 11 O -0.516 6.516 12 C -0.075 4.075 13 C -0.169 4.169 14 C -0.060 4.060 15 C -0.191 4.191 16 C 0.157 3.843 17 O -0.179 6.179 18 C -0.390 4.390 19 H 0.092 0.908 20 C 0.038 3.962 21 N -0.864 5.864 22 Si 0.941 3.059 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.232 4.232 27 C -0.056 4.056 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.088 0.912 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.107 0.893 44 H 0.116 0.884 45 H 0.269 0.731 46 H 0.126 0.874 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.063 17.638 -19.515 27.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.131 4.131 3 C -0.202 4.202 4 C 0.041 3.959 5 H 0.089 0.911 6 C -0.170 4.170 7 C -0.172 4.172 8 C -0.024 4.024 9 N -0.360 5.360 10 C 0.315 3.685 11 O -0.389 6.389 12 C -0.115 4.115 13 C -0.170 4.170 14 C -0.078 4.078 15 C -0.210 4.210 16 C 0.103 3.897 17 O -0.083 6.083 18 C -0.466 4.466 19 H 0.109 0.891 20 C -0.166 4.166 21 N -0.499 5.499 22 Si 0.765 3.235 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.251 4.251 27 C -0.074 4.074 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.106 0.894 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.125 0.875 44 H 0.134 0.866 45 H 0.079 0.921 46 H 0.144 0.856 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.383 17.386 -18.669 26.297 hybrid contribution -0.611 0.080 0.737 0.961 sum -6.993 17.466 -17.932 25.991 Atomic orbital electron populations 1.21806 0.95229 1.01693 1.01092 1.21473 0.96198 0.96081 0.99346 1.21809 1.01079 0.95634 1.01646 1.21534 0.98079 0.81541 0.94776 0.91073 1.22807 1.02209 0.97552 0.94389 1.22770 1.01826 0.95403 0.97183 1.22297 0.94936 0.99924 0.85201 1.48667 1.51377 1.11603 1.24329 1.20723 0.79806 0.86139 0.81839 1.90732 1.39712 1.81758 1.26745 1.20394 1.01651 0.90618 0.98829 1.18646 0.97806 1.03945 0.96611 1.20391 0.94875 0.95587 0.96936 1.20148 1.00792 1.05917 0.94181 1.19371 0.92165 0.89229 0.88916 1.83975 1.48595 1.54512 1.21195 1.21375 1.02948 1.32792 0.89481 0.89060 1.25283 0.97034 0.96015 0.98251 1.70055 1.21525 1.29489 1.28865 0.85652 0.79237 0.78363 0.80204 1.19113 1.20185 1.20163 1.21099 0.99072 1.04221 1.00733 1.20492 0.97800 0.96502 0.92655 0.92820 0.92971 0.92792 0.89391 0.92566 0.92696 0.92685 0.89931 0.90344 0.90622 0.89995 0.90510 0.91505 0.89309 0.89171 0.87460 0.86572 0.92143 0.85619 0.87929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.77 37.16 0.33 -1.03 16 2 C -0.11 -1.19 2.64 -90.62 -0.24 -1.43 16 3 C -0.14 -1.22 9.04 37.16 0.34 -0.88 16 4 C 0.14 1.44 2.71 -66.95 -0.18 1.26 16 5 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 6 C -0.13 -0.85 5.10 -24.90 -0.13 -0.98 16 7 C -0.13 -0.74 7.08 -24.59 -0.17 -0.91 16 8 C 0.10 0.72 6.74 -2.53 -0.02 0.70 16 9 N -0.62 -6.82 2.23 -163.02 -0.36 -7.18 16 10 C 0.53 7.74 7.66 -10.98 -0.08 7.65 16 11 O -0.52 -10.04 14.93 5.56 0.08 -9.95 16 12 C -0.08 -1.00 4.76 -29.04 -0.14 -1.14 16 13 C -0.17 -3.06 4.38 -104.57 -0.46 -3.51 16 14 C -0.06 -1.14 9.69 -39.61 -0.38 -1.53 16 15 C -0.19 -4.30 9.99 -39.40 -0.39 -4.69 16 16 C 0.16 3.99 6.65 -39.11 -0.26 3.73 16 17 O -0.18 -5.32 9.76 0.07 0.00 -5.31 16 18 C -0.39 -11.27 9.49 30.88 0.29 -10.98 16 19 H 0.09 2.46 5.20 -52.48 -0.27 2.19 16 20 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 21 N -0.86 -26.01 13.67 55.48 0.76 -25.25 16 22 Si 0.94 21.14 29.55 -169.99 -5.02 16.12 16 23 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 26 C -0.23 -5.35 9.17 -39.39 -0.36 -5.71 16 27 C -0.06 -1.10 9.69 -39.61 -0.38 -1.49 16 28 H 0.05 0.41 6.09 -51.93 -0.32 0.10 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.59 7.56 -51.93 -0.39 0.20 16 31 H 0.09 1.28 6.76 -51.93 -0.35 0.93 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.05 0.37 6.90 -51.93 -0.36 0.01 16 35 H 0.08 0.49 5.50 -51.93 -0.29 0.21 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.42 8.14 -51.92 -0.42 0.00 16 38 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 39 H 0.08 0.48 7.47 -51.93 -0.39 0.09 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.09 0.99 8.08 -51.93 -0.42 0.57 16 42 H 0.09 0.99 7.89 -51.93 -0.41 0.58 16 43 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 44 H 0.12 2.51 8.06 -52.49 -0.42 2.09 16 45 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 46 H 0.13 2.89 5.64 -52.49 -0.30 2.60 16 47 H 0.10 1.74 8.06 -52.48 -0.42 1.32 16 LS Contribution 375.25 15.07 5.65 5.65 Total: -1.00 -34.35 375.25 -8.51 -42.86 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -7.28 Total: 3.04 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: -2.34 Total: -19.97 kcal Atomic # 7 Polarization: -32.83 SS G_CDS: 0.39 Total: -32.43 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: 0.08 Total: -15.27 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.35 -8.51 -42.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264641202.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.365 kcal (2) G-P(sol) polarization free energy of solvation -34.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds