Wall clock time and date at job start Tue Mar 31 2020 12:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47334 * 2 1 4 4 C 1.52994 * 109.47185 * 239.99566 * 2 1 3 5 5 H 1.08997 * 109.87496 * 181.23029 * 4 2 1 6 6 C 1.54327 * 109.88384 * 60.05520 * 4 2 1 7 7 C 1.55155 * 102.94508 * 218.39274 * 6 4 2 8 8 C 1.54906 * 101.58346 * 35.49947 * 7 6 4 9 9 N 1.47023 * 109.88405 * 302.24926 * 4 2 1 10 10 C 1.34781 * 125.64637 * 298.32108 * 9 4 2 11 11 O 1.21279 * 119.99683 * 4.95162 * 10 9 4 12 12 C 1.50699 * 119.99970 * 184.94347 * 10 9 4 13 13 C 1.50697 * 109.47020 * 180.02562 * 12 10 9 14 14 C 1.38309 * 119.92979 * 269.72580 * 13 12 10 15 15 C 1.38093 * 120.06525 * 179.72339 * 14 13 12 16 16 C 1.38879 * 119.93585 * 0.55352 * 15 14 13 17 17 O 1.35746 * 120.07353 * 179.74377 * 16 15 14 18 18 C 1.34828 * 117.00233 * 174.45511 * 17 16 15 19 19 H 1.08007 * 120.00026 * 5.07178 * 18 17 16 20 20 C 1.38651 * 120.00356 * 185.06414 * 18 17 16 21 21 N 1.31562 * 119.99668 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00392 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.46649 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47192 * 120.00074 * 22 20 18 25 25 H 1.48494 * 109.47158 * 240.00643 * 22 20 18 26 26 C 1.38882 * 119.85723 * 359.72550 * 16 15 14 27 27 C 1.38097 * 119.93274 * 359.97438 * 26 16 15 28 28 H 1.08999 * 109.47584 * 60.00258 * 1 2 3 29 29 H 1.09002 * 109.47156 * 300.00468 * 1 2 3 30 30 H 1.09003 * 109.47441 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47026 * 119.99226 * 2 1 3 32 32 H 1.08996 * 109.47477 * 55.17313 * 3 2 1 33 33 H 1.08991 * 109.47476 * 175.18470 * 3 2 1 34 34 H 1.09007 * 109.46729 * 295.18098 * 3 2 1 35 35 H 1.09000 * 110.71779 * 336.75320 * 6 4 2 36 36 H 1.08996 * 110.71978 * 100.02616 * 6 4 2 37 37 H 1.09008 * 111.00089 * 277.42538 * 7 6 4 38 38 H 1.08993 * 111.03776 * 153.59239 * 7 6 4 39 39 H 1.09002 * 110.37149 * 204.15366 * 8 7 6 40 40 H 1.08996 * 110.46199 * 81.87715 * 8 7 6 41 41 H 1.09005 * 109.47319 * 300.00657 * 12 10 9 42 42 H 1.09005 * 109.47132 * 60.00008 * 12 10 9 43 43 H 1.07998 * 119.95991 * 0.02562 * 14 13 12 44 44 H 1.08002 * 120.03685 * 180.27223 * 15 14 13 45 45 H 0.96998 * 119.99734 * 179.97438 * 21 20 18 46 46 H 1.07996 * 120.03399 * 179.97438 * 26 16 15 47 47 H 1.08005 * 119.96915 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 1 3.1297 -0.7442 -1.2448 6 6 1.5319 -0.0005 -2.5156 7 6 1.2115 -1.1742 -3.4786 8 6 0.6826 -2.2478 -2.4952 9 7 1.5111 -2.0926 -1.2856 10 6 1.7456 -3.0497 -0.3660 11 8 2.3718 -2.7851 0.6383 12 6 1.2294 -4.4484 -0.5857 13 6 1.6231 -5.3180 0.5804 14 6 2.8208 -6.0092 0.5523 15 6 3.1870 -6.8024 1.6217 16 6 2.3462 -6.9148 2.7212 17 8 2.7010 -7.6978 3.7718 18 6 1.8963 -7.6727 4.8533 19 1 0.9730 -7.1130 4.8266 20 6 2.2540 -8.3656 5.9998 21 7 3.3788 -9.0472 6.0325 22 14 1.1388 -8.3314 7.4980 23 1 -0.0567 -7.5001 7.2062 24 1 0.7107 -9.7145 7.8281 25 1 1.8753 -7.7528 8.6502 26 6 1.1415 -6.2240 2.7439 27 6 0.7838 -5.4274 1.6740 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5137 0.8901 32 1 1.6079 1.9807 0.8435 33 1 3.1265 1.4437 0.0863 34 1 1.7489 1.9308 -0.9301 35 1 0.6327 0.5754 -2.2971 36 1 2.3092 0.6396 -2.9330 37 1 2.1120 -1.5195 -3.9867 38 1 0.4435 -0.8912 -4.1983 39 1 0.8103 -3.2447 -2.9172 40 1 -0.3667 -2.0670 -2.2620 41 1 0.1429 -4.4255 -0.6710 42 1 1.6573 -4.8538 -1.5026 43 1 3.4724 -5.9246 -0.3049 44 1 4.1244 -7.3385 1.6011 45 1 3.6292 -9.5316 6.8347 46 1 0.4853 -6.3096 3.5973 47 1 -0.1531 -4.8903 1.6909 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264641202.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:58 Heat of formation + Delta-G solvation = -66.628113 kcal Electronic energy + Delta-G solvation = -26487.675542 eV Core-core repulsion = 22827.866611 eV Total energy + Delta-G solvation = -3659.808932 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.48188 -40.70469 -39.05294 -37.97216 -35.58545 -34.40115 -33.07486 -32.14639 -31.79334 -29.14268 -28.24453 -27.90622 -27.01217 -24.63267 -23.65705 -22.87930 -22.43214 -20.84150 -19.86549 -19.47451 -18.84074 -17.93256 -17.39578 -16.63768 -16.48451 -16.26394 -15.94540 -15.82810 -15.53968 -15.18765 -15.07353 -14.56511 -14.47343 -14.25429 -14.21683 -13.97234 -13.77455 -13.60152 -13.05322 -13.02830 -12.86443 -12.83467 -12.68237 -12.47509 -12.32627 -12.27959 -12.17827 -12.11453 -11.97579 -11.88124 -11.47684 -11.21473 -11.19040 -10.85009 -10.64874 -9.78683 -9.53154 -8.91597 -8.48912 -6.17115 0.59229 0.65105 1.32523 1.41358 1.51536 1.74198 2.10311 2.16447 2.82139 3.14166 3.50288 3.58235 3.71785 3.86959 3.90920 4.02164 4.10501 4.16310 4.17091 4.19451 4.29339 4.44599 4.49837 4.56712 4.59637 4.64342 4.68599 4.77447 4.77859 4.86123 4.94179 5.00266 5.06358 5.08297 5.10124 5.13116 5.18148 5.26091 5.28171 5.31247 5.37888 5.49143 5.54502 5.65172 5.69601 5.76051 6.01467 6.20552 6.63803 6.95687 7.31864 7.76862 8.74929 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021487 B = 0.002669 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.810315 B =10487.015970 C =11123.807656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.112 4.112 3 C -0.139 4.139 4 C 0.137 3.863 5 H 0.049 0.951 6 C -0.123 4.123 7 C -0.125 4.125 8 C 0.088 3.912 9 N -0.616 5.616 10 C 0.522 3.478 11 O -0.579 6.579 12 C -0.072 4.072 13 C -0.144 4.144 14 C -0.058 4.058 15 C -0.205 4.205 16 C 0.113 3.887 17 O -0.233 6.233 18 C -0.414 4.414 19 H 0.099 0.901 20 C -0.024 4.024 21 N -0.922 5.922 22 Si 1.020 2.980 23 H -0.252 1.252 24 H -0.264 1.264 25 H -0.269 1.269 26 C -0.243 4.243 27 C -0.060 4.060 28 H 0.081 0.919 29 H 0.046 0.954 30 H 0.039 0.961 31 H 0.038 0.962 32 H 0.054 0.946 33 H 0.046 0.954 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.109 0.891 39 H 0.094 0.906 40 H 0.082 0.918 41 H 0.122 0.878 42 H 0.126 0.874 43 H 0.145 0.855 44 H 0.113 0.887 45 H 0.273 0.727 46 H 0.117 0.883 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.740 20.171 -23.157 32.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.132 4.132 3 C -0.197 4.197 4 C 0.034 3.966 5 H 0.068 0.932 6 C -0.161 4.161 7 C -0.163 4.163 8 C -0.033 4.033 9 N -0.350 5.350 10 C 0.312 3.688 11 O -0.458 6.458 12 C -0.111 4.111 13 C -0.145 4.145 14 C -0.076 4.076 15 C -0.225 4.225 16 C 0.063 3.937 17 O -0.140 6.140 18 C -0.490 4.490 19 H 0.117 0.883 20 C -0.221 4.221 21 N -0.560 5.560 22 Si 0.839 3.161 23 H -0.176 1.176 24 H -0.189 1.189 25 H -0.194 1.194 26 C -0.262 4.262 27 C -0.078 4.078 28 H 0.100 0.900 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.099 0.901 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.095 0.905 38 H 0.127 0.873 39 H 0.112 0.888 40 H 0.100 0.900 41 H 0.140 0.860 42 H 0.144 0.856 43 H 0.163 0.837 44 H 0.131 0.869 45 H 0.082 0.918 46 H 0.135 0.865 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.098 19.965 -22.419 31.368 hybrid contribution 0.215 -0.483 1.513 1.603 sum -8.883 19.482 -20.905 29.925 Atomic orbital electron populations 1.21762 0.94099 1.01088 1.02255 1.21410 0.97096 0.96927 0.97770 1.21774 1.00551 0.94372 1.02974 1.21666 0.97058 0.81522 0.96375 0.93239 1.22805 1.02940 0.97870 0.92483 1.22790 1.02675 0.93989 0.96866 1.22680 0.95068 1.01724 0.83849 1.48675 1.50629 1.11247 1.24468 1.20839 0.79256 0.87110 0.81640 1.90734 1.42795 1.82820 1.29449 1.20494 1.03983 0.88947 0.97716 1.19245 0.96145 1.01899 0.97238 1.20848 0.95792 0.94102 0.96834 1.20431 1.00622 1.06775 0.94632 1.19908 0.94028 0.90645 0.89113 1.83935 1.50159 1.57327 1.22580 1.21860 1.03521 1.33458 0.90173 0.88327 1.26622 0.98822 0.95198 1.01487 1.70197 1.24111 1.31479 1.30229 0.84515 0.77241 0.79070 0.75258 1.17587 1.18903 1.19375 1.21212 0.98315 1.04853 1.01837 1.20891 0.99420 0.95576 0.91918 0.90021 0.93450 0.94187 0.94340 0.92652 0.93454 0.90091 0.88764 0.89000 0.90539 0.87274 0.88802 0.90011 0.85972 0.85575 0.83750 0.86922 0.91800 0.86499 0.84703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 8.77 71.98 0.63 -1.69 16 2 C -0.11 -2.32 2.64 -10.80 -0.03 -2.35 16 3 C -0.14 -2.17 9.04 71.98 0.65 -1.52 16 4 C 0.14 2.47 2.71 45.34 0.12 2.59 16 5 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 6 C -0.12 -1.07 5.10 31.78 0.16 -0.91 16 7 C -0.13 -0.74 7.08 31.98 0.23 -0.51 16 8 C 0.09 0.83 6.74 86.85 0.59 1.42 16 9 N -0.62 -11.71 2.23 -788.06 -1.76 -13.46 16 10 C 0.52 14.22 7.66 87.66 0.67 14.89 16 11 O -0.58 -22.63 14.93 -3.03 -0.05 -22.67 16 12 C -0.07 -1.63 4.76 29.10 0.14 -1.49 16 13 C -0.14 -4.90 4.38 -19.83 -0.09 -4.99 16 14 C -0.06 -2.15 9.69 22.25 0.22 -1.93 16 15 C -0.21 -9.58 9.99 22.39 0.22 -9.35 16 16 C 0.11 6.10 6.65 22.58 0.15 6.25 16 17 O -0.23 -14.89 9.76 -22.68 -0.22 -15.12 16 18 C -0.41 -25.45 9.49 67.92 0.64 -24.80 16 19 H 0.10 5.62 5.20 -2.91 -0.02 5.61 16 20 C -0.02 -1.44 5.49 84.83 0.47 -0.97 16 21 N -0.92 -58.73 13.67 21.61 0.30 -58.44 16 22 Si 1.02 44.81 29.55 68.60 2.03 46.84 16 23 H -0.25 -10.31 7.11 99.48 0.71 -9.60 16 24 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 25 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 26 C -0.24 -11.58 9.17 22.39 0.21 -11.38 16 27 C -0.06 -2.30 9.69 22.25 0.22 -2.08 16 28 H 0.08 0.93 6.09 -2.39 -0.01 0.91 16 29 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.04 0.79 7.56 -2.39 -0.02 0.77 16 31 H 0.04 1.18 6.76 -2.39 -0.02 1.16 16 32 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.08 0.84 6.90 -2.38 -0.02 0.82 16 35 H 0.09 0.63 5.50 -2.39 -0.01 0.62 16 36 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.08 0.49 8.14 -2.38 -0.02 0.47 16 38 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 39 H 0.09 0.62 7.47 -2.39 -0.02 0.60 16 40 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.12 2.04 8.08 -2.38 -0.02 2.02 16 42 H 0.13 2.04 7.89 -2.38 -0.02 2.02 16 43 H 0.14 4.26 8.06 -2.91 -0.02 4.23 16 44 H 0.11 5.17 8.06 -2.91 -0.02 5.15 16 45 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 46 H 0.12 5.64 5.64 -2.91 -0.02 5.63 16 47 H 0.14 4.24 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -84.50 375.25 6.45 -78.05 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: 0.96 Total: 23.62 kcal Atomic # 6 Polarization: -44.01 SS G_CDS: 5.19 Total: -38.82 kcal Atomic # 7 Polarization: -70.44 SS G_CDS: -1.46 Total: -71.90 kcal Atomic # 8 Polarization: -37.52 SS G_CDS: -0.27 Total: -37.79 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -84.50 6.45 -78.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264641202.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.424 kcal (2) G-P(sol) polarization free energy of solvation -84.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds