Wall clock time and date at job start Tue Mar 31 2020 12:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46911 * 2 1 4 4 C 1.52996 * 109.47033 * 119.99893 * 2 1 3 5 5 H 1.09004 * 109.99946 * 180.45125 * 4 2 1 6 6 C 1.54317 * 109.77492 * 301.59951 * 4 2 1 7 7 C 1.55157 * 102.86798 * 141.88523 * 6 4 2 8 8 C 1.54917 * 101.57826 * 324.30792 * 7 6 4 9 9 N 1.47017 * 109.88405 * 59.34558 * 4 2 1 10 10 C 1.34783 * 125.64629 * 61.68327 * 9 4 2 11 11 O 1.21290 * 119.99762 * 4.95300 * 10 9 4 12 12 C 1.50696 * 120.00095 * 184.95613 * 10 9 4 13 13 C 1.50700 * 109.47078 * 179.97438 * 12 10 9 14 14 C 1.38305 * 119.93286 * 269.72858 * 13 12 10 15 15 C 1.38096 * 120.07209 * 179.72325 * 14 13 12 16 16 C 1.38880 * 119.92454 * 0.57140 * 15 14 13 17 17 O 1.35761 * 120.06796 * 179.68186 * 16 15 14 18 18 C 1.34831 * 116.99885 * 174.34625 * 17 16 15 19 19 H 1.07999 * 120.00253 * 5.07137 * 18 17 16 20 20 C 1.38659 * 119.99197 * 185.06855 * 18 17 16 21 21 N 1.31553 * 120.00484 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99404 * 179.97438 * 20 18 17 23 23 H 1.48511 * 109.46954 * 60.00465 * 22 20 18 24 24 H 1.48502 * 109.47057 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47228 * 300.00701 * 22 20 18 26 26 C 1.38882 * 119.86656 * 359.70047 * 16 15 14 27 27 C 1.38097 * 119.93012 * 0.02562 * 26 16 15 28 28 H 1.08998 * 109.47556 * 305.44517 * 1 2 3 29 29 H 1.09003 * 109.47287 * 65.44241 * 1 2 3 30 30 H 1.08996 * 109.47333 * 185.44048 * 1 2 3 31 31 H 1.09000 * 109.47142 * 240.00175 * 2 1 3 32 32 H 1.08996 * 109.46963 * 184.90175 * 3 2 1 33 33 H 1.09004 * 109.47122 * 304.89817 * 3 2 1 34 34 H 1.09002 * 109.47612 * 64.90344 * 3 2 1 35 35 H 1.09004 * 110.92229 * 23.47132 * 6 4 2 36 36 H 1.09004 * 110.59188 * 260.14884 * 6 4 2 37 37 H 1.08990 * 111.00948 * 206.23571 * 7 6 4 38 38 H 1.08996 * 111.03554 * 82.38737 * 7 6 4 39 39 H 1.09000 * 110.36233 * 278.16790 * 8 7 6 40 40 H 1.09000 * 110.45970 * 155.89460 * 8 7 6 41 41 H 1.09003 * 109.47087 * 59.99980 * 12 10 9 42 42 H 1.09001 * 109.47347 * 299.99497 * 12 10 9 43 43 H 1.07996 * 119.96362 * 359.97438 * 14 13 12 44 44 H 1.07997 * 120.03865 * 180.27161 * 15 14 13 45 45 H 0.97001 * 119.99634 * 179.97438 * 21 20 18 46 46 H 1.08000 * 120.03401 * 179.97438 * 26 16 15 47 47 H 1.07993 * 119.96663 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 3.1299 -0.7193 1.2620 6 6 1.4966 -0.0230 2.5136 7 6 1.1974 -1.2126 3.4637 8 6 0.7061 -2.2912 2.4662 9 7 1.5421 -2.1044 1.2663 10 6 1.8103 -3.0473 0.3413 11 8 2.5894 -2.8106 -0.5576 12 6 1.1421 -4.3955 0.4239 13 6 1.6091 -5.2585 -0.7199 14 6 0.9166 -5.2517 -1.9170 15 6 1.3454 -6.0370 -2.9689 16 6 2.4664 -6.8432 -2.8197 17 8 2.8866 -7.6213 -3.8497 18 6 4.0455 -8.2891 -3.6792 19 1 4.5524 -8.2565 -2.7261 20 6 4.5864 -9.0177 -4.7277 21 7 3.9692 -9.0570 -5.8888 22 14 6.1923 -9.9422 -4.4917 23 1 6.0330 -10.9416 -3.4048 24 1 6.5540 -10.6362 -5.7538 25 1 7.2668 -8.9835 -4.1290 26 6 3.1563 -6.8521 -1.6144 27 6 2.7258 -6.0602 -0.5681 28 1 -0.3634 0.5959 0.8372 29 1 -0.3634 0.4271 -0.9347 30 1 -0.3634 -1.0230 0.0974 31 1 1.8934 -0.5138 -0.8900 32 1 3.1264 1.4438 -0.0878 33 1 1.6067 1.9810 -0.8429 34 1 1.7501 1.9304 0.9306 35 1 0.5849 0.5313 2.2907 36 1 2.2529 0.6336 2.9439 37 1 0.4150 -0.9553 4.1775 38 1 2.1010 -1.5391 3.9783 39 1 -0.3450 -2.1337 2.2244 40 1 0.8541 -3.2886 2.8801 41 1 0.0610 -4.2693 0.3655 42 1 1.4018 -4.8725 1.3690 43 1 0.0420 -4.6285 -2.0307 44 1 0.8068 -6.0280 -3.9050 45 1 4.3479 -9.5664 -6.6222 46 1 4.0281 -7.4783 -1.4952 47 1 3.2617 -6.0670 0.3695 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264641203.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:02 Heat of formation + Delta-G solvation = -46.296739 kcal Electronic energy + Delta-G solvation = -26463.090560 eV Core-core repulsion = 22804.163262 eV Total energy + Delta-G solvation = -3658.927297 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.53052 -38.99694 -37.82525 -36.30868 -34.81890 -32.43500 -31.92407 -30.95888 -30.08272 -28.39887 -27.32751 -26.59867 -25.13343 -23.73095 -22.26881 -21.90556 -20.99326 -19.83025 -18.53897 -17.91409 -17.01547 -16.88708 -16.64991 -15.51688 -15.21288 -14.76269 -14.52722 -14.28882 -14.17015 -13.79137 -13.62325 -13.51970 -13.45034 -13.14787 -13.12648 -12.63616 -12.47139 -12.41034 -12.20935 -12.01768 -11.79269 -11.55042 -11.52627 -11.41463 -11.20379 -11.14087 -10.85257 -10.77833 -10.68584 -10.58451 -10.48923 -10.38854 -9.56084 -9.26754 -8.76055 -8.64005 -8.08217 -7.09578 -6.39034 -3.97561 2.31171 2.32421 2.83159 3.02103 3.16768 3.19331 3.21031 4.02002 4.20948 4.25718 4.53377 4.61352 4.74649 4.87610 4.91856 5.01725 5.07856 5.14597 5.17143 5.25283 5.32518 5.36316 5.39991 5.41669 5.45246 5.46482 5.56741 5.66697 5.69932 5.72625 5.79723 5.80227 5.89702 5.91905 5.96991 6.09679 6.20036 6.28168 6.42846 6.48672 6.77150 6.98360 7.11865 7.30649 7.43945 7.50476 7.55445 7.90860 8.06318 8.37824 9.06667 9.77723 10.79176 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023381 B = 0.002555 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.282301 B =10956.170779 C =11097.311779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.110 4.110 3 C -0.143 4.143 4 C 0.143 3.857 5 H 0.072 0.928 6 C -0.132 4.132 7 C -0.134 4.134 8 C 0.100 3.900 9 N -0.623 5.623 10 C 0.526 3.474 11 O -0.516 6.516 12 C -0.075 4.075 13 C -0.169 4.169 14 C -0.059 4.059 15 C -0.191 4.191 16 C 0.157 3.843 17 O -0.179 6.179 18 C -0.391 4.391 19 H 0.091 0.909 20 C 0.039 3.961 21 N -0.864 5.864 22 Si 0.940 3.060 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.270 1.270 26 C -0.232 4.232 27 C -0.056 4.056 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.084 0.916 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.107 0.893 44 H 0.116 0.884 45 H 0.270 0.730 46 H 0.126 0.874 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.856 17.359 19.464 27.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.130 4.130 3 C -0.201 4.201 4 C 0.040 3.960 5 H 0.090 0.910 6 C -0.169 4.169 7 C -0.172 4.172 8 C -0.023 4.023 9 N -0.360 5.360 10 C 0.315 3.685 11 O -0.390 6.390 12 C -0.115 4.115 13 C -0.170 4.170 14 C -0.078 4.078 15 C -0.210 4.210 16 C 0.103 3.897 17 O -0.082 6.082 18 C -0.467 4.467 19 H 0.108 0.892 20 C -0.165 4.165 21 N -0.499 5.499 22 Si 0.765 3.235 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.195 1.195 26 C -0.251 4.251 27 C -0.075 4.075 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.102 0.898 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.125 0.875 44 H 0.134 0.866 45 H 0.080 0.920 46 H 0.144 0.856 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -7.458 17.232 18.422 26.305 hybrid contribution 0.854 -0.436 0.206 0.981 sum -6.604 16.795 18.628 25.937 Atomic orbital electron populations 1.21829 0.95177 1.01741 1.01216 1.21441 0.96174 0.96192 0.99170 1.21797 1.01141 0.95510 1.01671 1.21528 0.98446 0.81271 0.94743 0.91003 1.22809 1.02139 0.97532 0.94470 1.22773 1.01984 0.95254 0.97175 1.22294 0.94936 0.99777 0.85324 1.48671 1.51466 1.11147 1.24708 1.20725 0.81839 0.85395 0.80526 1.90742 1.34341 1.80209 1.33728 1.20396 1.00474 0.91410 0.99202 1.18646 1.00113 1.03094 0.95166 1.20385 0.98229 0.97071 0.92080 1.20147 0.99357 1.01707 0.99825 1.19376 0.92756 0.89539 0.88030 1.83979 1.37839 1.51439 1.34961 1.21280 0.98056 1.27860 0.99535 0.89165 1.25276 0.99326 0.97532 0.94380 1.70032 1.38636 1.39230 1.02051 0.85795 0.80404 0.79305 0.78003 1.19531 1.20300 1.19510 1.21098 1.04126 1.05885 0.94023 1.20496 0.94591 0.94949 0.97446 0.92748 0.92922 0.92659 0.89763 0.92649 0.92531 0.92645 0.89881 0.90368 0.89974 0.90650 0.91493 0.90566 0.89185 0.89292 0.87479 0.86575 0.92034 0.85622 0.87912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 8.72 37.16 0.32 -0.97 16 2 C -0.11 -1.15 2.66 -90.62 -0.24 -1.39 16 3 C -0.14 -1.20 9.06 37.16 0.34 -0.86 16 4 C 0.14 1.43 2.65 -66.96 -0.18 1.26 16 5 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 6 C -0.13 -0.85 5.11 -24.90 -0.13 -0.98 16 7 C -0.13 -0.75 7.08 -24.58 -0.17 -0.93 16 8 C 0.10 0.72 6.63 -2.53 -0.02 0.71 16 9 N -0.62 -6.84 2.21 -163.02 -0.36 -7.20 16 10 C 0.53 7.77 7.59 -10.98 -0.08 7.69 16 11 O -0.52 -10.13 15.26 5.55 0.08 -10.05 16 12 C -0.08 -1.01 4.92 -29.04 -0.14 -1.15 16 13 C -0.17 -3.07 4.38 -104.57 -0.46 -3.52 16 14 C -0.06 -1.14 9.69 -39.61 -0.38 -1.52 16 15 C -0.19 -4.30 9.99 -39.40 -0.39 -4.69 16 16 C 0.16 3.99 6.65 -39.11 -0.26 3.73 16 17 O -0.18 -5.30 9.76 0.01 0.00 -5.30 16 18 C -0.39 -11.32 9.49 30.89 0.29 -11.03 16 19 H 0.09 2.42 5.21 -52.49 -0.27 2.15 16 20 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 21 N -0.86 -26.03 13.67 55.48 0.76 -25.27 16 22 Si 0.94 21.13 29.55 -169.99 -5.02 16.11 16 23 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 24 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 26 C -0.23 -5.35 9.17 -39.39 -0.36 -5.72 16 27 C -0.06 -1.11 9.69 -39.61 -0.38 -1.50 16 28 H 0.05 0.39 6.22 -51.93 -0.32 0.07 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.55 7.41 -51.93 -0.38 0.17 16 31 H 0.08 1.19 7.03 -51.93 -0.37 0.83 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.05 0.37 7.01 -51.93 -0.36 0.01 16 35 H 0.08 0.48 5.59 -51.93 -0.29 0.19 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.49 7.51 -51.93 -0.39 0.10 16 41 H 0.09 1.00 8.08 -51.93 -0.42 0.58 16 42 H 0.09 0.99 7.70 -51.93 -0.40 0.59 16 43 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 44 H 0.12 2.51 8.06 -52.49 -0.42 2.09 16 45 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 46 H 0.13 2.88 5.64 -52.49 -0.30 2.59 16 47 H 0.10 1.75 8.06 -52.49 -0.42 1.32 16 LS Contribution 375.74 15.07 5.66 5.66 Total: -1.00 -34.44 375.74 -8.51 -42.95 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -7.29 Total: 2.97 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: -2.34 Total: -19.87 kcal Atomic # 7 Polarization: -32.87 SS G_CDS: 0.40 Total: -32.47 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: 0.08 Total: -15.35 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.44 -8.51 -42.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264641203.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.343 kcal (2) G-P(sol) polarization free energy of solvation -34.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds