Wall clock time and date at job start Tue Mar 31 2020 12:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46911 * 2 1 4 4 C 1.52996 * 109.47033 * 119.99893 * 2 1 3 5 5 H 1.09004 * 109.99946 * 180.45125 * 4 2 1 6 6 C 1.54317 * 109.77492 * 301.59951 * 4 2 1 7 7 C 1.55157 * 102.86798 * 141.88523 * 6 4 2 8 8 C 1.54917 * 101.57826 * 324.30792 * 7 6 4 9 9 N 1.47017 * 109.88405 * 59.34558 * 4 2 1 10 10 C 1.34783 * 125.64629 * 61.68327 * 9 4 2 11 11 O 1.21290 * 119.99762 * 4.95300 * 10 9 4 12 12 C 1.50696 * 120.00095 * 184.95613 * 10 9 4 13 13 C 1.50700 * 109.47078 * 179.97438 * 12 10 9 14 14 C 1.38305 * 119.93286 * 269.72858 * 13 12 10 15 15 C 1.38096 * 120.07209 * 179.72325 * 14 13 12 16 16 C 1.38880 * 119.92454 * 0.57140 * 15 14 13 17 17 O 1.35761 * 120.06796 * 179.68186 * 16 15 14 18 18 C 1.34831 * 116.99885 * 174.34625 * 17 16 15 19 19 H 1.07999 * 120.00253 * 5.07137 * 18 17 16 20 20 C 1.38659 * 119.99197 * 185.06855 * 18 17 16 21 21 N 1.31553 * 120.00484 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99404 * 179.97438 * 20 18 17 23 23 H 1.48511 * 109.46954 * 60.00465 * 22 20 18 24 24 H 1.48502 * 109.47057 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47228 * 300.00701 * 22 20 18 26 26 C 1.38882 * 119.86656 * 359.70047 * 16 15 14 27 27 C 1.38097 * 119.93012 * 0.02562 * 26 16 15 28 28 H 1.08998 * 109.47556 * 305.44517 * 1 2 3 29 29 H 1.09003 * 109.47287 * 65.44241 * 1 2 3 30 30 H 1.08996 * 109.47333 * 185.44048 * 1 2 3 31 31 H 1.09000 * 109.47142 * 240.00175 * 2 1 3 32 32 H 1.08996 * 109.46963 * 184.90175 * 3 2 1 33 33 H 1.09004 * 109.47122 * 304.89817 * 3 2 1 34 34 H 1.09002 * 109.47612 * 64.90344 * 3 2 1 35 35 H 1.09004 * 110.92229 * 23.47132 * 6 4 2 36 36 H 1.09004 * 110.59188 * 260.14884 * 6 4 2 37 37 H 1.08990 * 111.00948 * 206.23571 * 7 6 4 38 38 H 1.08996 * 111.03554 * 82.38737 * 7 6 4 39 39 H 1.09000 * 110.36233 * 278.16790 * 8 7 6 40 40 H 1.09000 * 110.45970 * 155.89460 * 8 7 6 41 41 H 1.09003 * 109.47087 * 59.99980 * 12 10 9 42 42 H 1.09001 * 109.47347 * 299.99497 * 12 10 9 43 43 H 1.07996 * 119.96362 * 359.97438 * 14 13 12 44 44 H 1.07997 * 120.03865 * 180.27161 * 15 14 13 45 45 H 0.97001 * 119.99634 * 179.97438 * 21 20 18 46 46 H 1.08000 * 120.03401 * 179.97438 * 26 16 15 47 47 H 1.07993 * 119.96663 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 3.1299 -0.7193 1.2620 6 6 1.4966 -0.0230 2.5136 7 6 1.1974 -1.2126 3.4637 8 6 0.7061 -2.2912 2.4662 9 7 1.5421 -2.1044 1.2663 10 6 1.8103 -3.0473 0.3413 11 8 2.5894 -2.8106 -0.5576 12 6 1.1421 -4.3955 0.4239 13 6 1.6091 -5.2585 -0.7199 14 6 0.9166 -5.2517 -1.9170 15 6 1.3454 -6.0370 -2.9689 16 6 2.4664 -6.8432 -2.8197 17 8 2.8866 -7.6213 -3.8497 18 6 4.0455 -8.2891 -3.6792 19 1 4.5524 -8.2565 -2.7261 20 6 4.5864 -9.0177 -4.7277 21 7 3.9692 -9.0570 -5.8888 22 14 6.1923 -9.9422 -4.4917 23 1 6.0330 -10.9416 -3.4048 24 1 6.5540 -10.6362 -5.7538 25 1 7.2668 -8.9835 -4.1290 26 6 3.1563 -6.8521 -1.6144 27 6 2.7258 -6.0602 -0.5681 28 1 -0.3634 0.5959 0.8372 29 1 -0.3634 0.4271 -0.9347 30 1 -0.3634 -1.0230 0.0974 31 1 1.8934 -0.5138 -0.8900 32 1 3.1264 1.4438 -0.0878 33 1 1.6067 1.9810 -0.8429 34 1 1.7501 1.9304 0.9306 35 1 0.5849 0.5313 2.2907 36 1 2.2529 0.6336 2.9439 37 1 0.4150 -0.9553 4.1775 38 1 2.1010 -1.5391 3.9783 39 1 -0.3450 -2.1337 2.2244 40 1 0.8541 -3.2886 2.8801 41 1 0.0610 -4.2693 0.3655 42 1 1.4018 -4.8725 1.3690 43 1 0.0420 -4.6285 -2.0307 44 1 0.8068 -6.0280 -3.9050 45 1 4.3479 -9.5664 -6.6222 46 1 4.0281 -7.4783 -1.4952 47 1 3.2617 -6.0670 0.3695 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264641203.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:02 Heat of formation + Delta-G solvation = -66.795897 kcal Electronic energy + Delta-G solvation = -26463.979470 eV Core-core repulsion = 22804.163262 eV Total energy + Delta-G solvation = -3659.816208 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.48222 -40.70244 -39.06206 -37.97752 -35.57764 -34.40163 -33.09274 -32.14867 -31.79268 -29.13962 -28.22387 -27.92074 -27.01103 -24.62871 -23.65706 -22.89052 -22.43420 -20.84520 -19.85391 -19.45897 -18.83279 -17.95978 -17.42371 -16.60255 -16.48107 -16.28612 -16.04056 -15.76468 -15.50666 -15.30208 -14.94115 -14.64742 -14.41267 -14.25309 -14.13650 -14.05399 -13.79717 -13.60098 -13.05943 -13.00257 -12.88592 -12.81445 -12.66990 -12.45176 -12.33478 -12.29292 -12.17100 -12.14803 -11.98122 -11.87477 -11.46615 -11.21162 -11.19610 -10.85397 -10.68511 -9.78716 -9.53790 -8.91732 -8.48405 -6.16840 0.59189 0.65178 1.32508 1.43906 1.49475 1.73420 2.09923 2.16971 2.82271 3.14231 3.50391 3.57561 3.71115 3.86423 3.90828 4.02137 4.09929 4.15120 4.17881 4.19628 4.28787 4.44329 4.49920 4.56713 4.59629 4.64231 4.68742 4.77091 4.78355 4.85947 4.94115 5.01165 5.06371 5.07760 5.10348 5.12913 5.17490 5.25759 5.28260 5.31015 5.37252 5.49346 5.54260 5.63971 5.69562 5.75995 6.01330 6.20517 6.63168 6.95839 7.31107 7.76908 8.74955 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023381 B = 0.002555 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.282301 B =10956.170779 C =11097.311779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.111 4.111 3 C -0.139 4.139 4 C 0.137 3.863 5 H 0.046 0.954 6 C -0.123 4.123 7 C -0.126 4.126 8 C 0.089 3.911 9 N -0.616 5.616 10 C 0.522 3.478 11 O -0.581 6.581 12 C -0.072 4.072 13 C -0.144 4.144 14 C -0.058 4.058 15 C -0.205 4.205 16 C 0.113 3.887 17 O -0.233 6.233 18 C -0.416 4.416 19 H 0.100 0.900 20 C -0.023 4.023 21 N -0.922 5.922 22 Si 1.020 2.980 23 H -0.254 1.254 24 H -0.269 1.269 25 H -0.260 1.260 26 C -0.243 4.243 27 C -0.060 4.060 28 H 0.081 0.919 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.035 0.965 32 H 0.044 0.956 33 H 0.056 0.944 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.110 0.890 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.125 0.875 42 H 0.124 0.876 43 H 0.144 0.856 44 H 0.112 0.888 45 H 0.273 0.727 46 H 0.118 0.882 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.174 19.225 24.082 32.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 C -0.197 4.197 4 C 0.033 3.967 5 H 0.064 0.936 6 C -0.161 4.161 7 C -0.164 4.164 8 C -0.033 4.033 9 N -0.350 5.350 10 C 0.312 3.688 11 O -0.460 6.460 12 C -0.111 4.111 13 C -0.146 4.146 14 C -0.076 4.076 15 C -0.225 4.225 16 C 0.063 3.937 17 O -0.140 6.140 18 C -0.492 4.492 19 H 0.117 0.883 20 C -0.221 4.221 21 N -0.560 5.560 22 Si 0.838 3.162 23 H -0.178 1.178 24 H -0.193 1.193 25 H -0.185 1.185 26 C -0.262 4.262 27 C -0.078 4.078 28 H 0.100 0.900 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.115 0.885 36 H 0.108 0.892 37 H 0.129 0.871 38 H 0.091 0.909 39 H 0.104 0.896 40 H 0.109 0.891 41 H 0.143 0.857 42 H 0.142 0.858 43 H 0.161 0.839 44 H 0.130 0.870 45 H 0.082 0.918 46 H 0.136 0.864 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.833 19.149 23.139 31.307 hybrid contribution 1.072 -0.729 -0.981 1.626 sum -7.762 18.420 22.158 29.841 Atomic orbital electron populations 1.21789 0.93723 1.01697 1.02162 1.21384 0.97333 0.96885 0.97422 1.21770 1.00463 0.94397 1.03055 1.21657 0.97269 0.81252 0.96509 0.93583 1.22808 1.02854 0.97879 0.92519 1.22795 1.02819 0.93882 0.96906 1.22686 0.95250 1.01395 0.83954 1.48681 1.50764 1.10822 1.24762 1.20843 0.81255 0.86288 0.80405 1.90740 1.37337 1.81426 1.36505 1.20496 1.02307 0.89947 0.98370 1.19246 0.98042 1.01158 0.96110 1.20835 0.99256 0.96087 0.91394 1.20425 0.98856 1.02098 1.01091 1.19914 0.94481 0.90852 0.88473 1.83939 1.38960 1.53872 1.37191 1.21793 0.98568 1.28458 1.00419 0.88306 1.26622 1.03433 0.98307 0.93706 1.70182 1.41164 1.41324 1.03325 0.84647 0.74924 0.77982 0.78626 1.17820 1.19347 1.18485 1.21223 1.03969 1.06684 0.94353 1.20906 0.95173 0.94042 0.97718 0.90007 0.93441 0.93462 0.94655 0.93672 0.92464 0.90072 0.88476 0.89169 0.87142 0.90863 0.89580 0.89074 0.85693 0.85813 0.83867 0.86960 0.91785 0.86400 0.84574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 8.72 71.98 0.63 -1.52 16 2 C -0.11 -2.22 2.66 -10.79 -0.03 -2.25 16 3 C -0.14 -2.15 9.06 71.98 0.65 -1.50 16 4 C 0.14 2.48 2.65 45.34 0.12 2.60 16 5 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 6 C -0.12 -1.08 5.11 31.78 0.16 -0.92 16 7 C -0.13 -0.78 7.08 31.99 0.23 -0.55 16 8 C 0.09 0.84 6.63 86.86 0.58 1.41 16 9 N -0.62 -11.77 2.21 -788.06 -1.74 -13.51 16 10 C 0.52 14.31 7.59 87.65 0.67 14.98 16 11 O -0.58 -22.91 15.26 -3.06 -0.05 -22.96 16 12 C -0.07 -1.63 4.92 29.10 0.14 -1.49 16 13 C -0.14 -4.93 4.38 -19.83 -0.09 -5.01 16 14 C -0.06 -2.16 9.69 22.25 0.22 -1.94 16 15 C -0.21 -9.61 9.99 22.39 0.22 -9.39 16 16 C 0.11 6.10 6.65 22.58 0.15 6.25 16 17 O -0.23 -14.88 9.76 -22.87 -0.22 -15.11 16 18 C -0.42 -25.59 9.49 67.92 0.64 -24.95 16 19 H 0.10 5.61 5.21 -2.91 -0.02 5.59 16 20 C -0.02 -1.39 5.49 84.84 0.47 -0.93 16 21 N -0.92 -58.77 13.67 21.61 0.30 -58.47 16 22 Si 1.02 44.72 29.55 68.60 2.03 46.75 16 23 H -0.25 -10.35 7.11 99.48 0.71 -9.65 16 24 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 25 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 26 C -0.24 -11.58 9.17 22.39 0.21 -11.37 16 27 C -0.06 -2.31 9.69 22.25 0.22 -2.09 16 28 H 0.08 0.83 6.22 -2.39 -0.01 0.82 16 29 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.05 0.81 7.41 -2.39 -0.02 0.79 16 31 H 0.03 1.05 7.03 -2.39 -0.02 1.03 16 32 H 0.04 0.77 8.14 -2.39 -0.02 0.76 16 33 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.08 0.83 7.01 -2.39 -0.02 0.81 16 35 H 0.10 0.62 5.59 -2.38 -0.01 0.60 16 36 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 37 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 38 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.09 0.64 7.51 -2.39 -0.02 0.62 16 41 H 0.13 2.06 8.08 -2.39 -0.02 2.04 16 42 H 0.12 2.04 7.70 -2.39 -0.02 2.02 16 43 H 0.14 4.27 8.06 -2.91 -0.02 4.24 16 44 H 0.11 5.17 8.06 -2.91 -0.02 5.15 16 45 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 46 H 0.12 5.66 5.64 -2.91 -0.02 5.64 16 47 H 0.14 4.25 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -84.78 375.74 6.45 -78.33 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: 0.96 Total: 23.63 kcal Atomic # 6 Polarization: -43.84 SS G_CDS: 5.18 Total: -38.66 kcal Atomic # 7 Polarization: -70.54 SS G_CDS: -1.44 Total: -71.99 kcal Atomic # 8 Polarization: -37.79 SS G_CDS: -0.27 Total: -38.06 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -84.78 6.45 -78.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264641203.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.537 kcal (2) G-P(sol) polarization free energy of solvation -84.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds