Wall clock time and date at job start Tue Mar 31 2020 12:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47070 * 2 1 4 4 C 1.53001 * 109.46940 * 240.00378 * 2 1 3 5 5 H 1.09004 * 109.82004 * 305.56155 * 4 2 1 6 6 O 1.43233 * 109.83475 * 66.45252 * 4 2 1 7 7 C 1.43649 * 109.97136 * 117.80326 * 6 4 2 8 8 C 1.54941 * 105.13487 * 24.42867 * 7 6 4 9 9 C 1.54389 * 109.83000 * 184.59151 * 4 2 1 10 10 H 1.09004 * 110.84567 * 337.30904 * 9 4 2 11 11 C 1.52993 * 110.85052 * 100.93654 * 9 4 2 12 12 N 1.46501 * 109.46863 * 185.00042 * 11 9 4 13 13 C 1.34780 * 119.99871 * 180.02562 * 12 11 9 14 14 O 1.21552 * 120.00066 * 359.97438 * 13 12 11 15 15 C 1.47888 * 119.99983 * 180.02562 * 13 12 11 16 16 C 1.39918 * 120.02586 * 359.97438 * 15 13 12 17 17 C 1.38326 * 120.35919 * 179.97438 * 16 15 13 18 18 C 1.37750 * 120.41157 * 359.97438 * 17 16 15 19 19 C 1.40748 * 120.04005 * 0.02562 * 18 17 16 20 20 C 1.41437 * 120.17548 * 180.02562 * 19 18 17 21 21 H 1.08000 * 120.00652 * 24.34857 * 20 19 18 22 22 C 1.39941 * 119.99619 * 204.35386 * 20 19 18 23 23 N 1.30827 * 119.99830 * 17.73759 * 22 20 19 24 24 Si 1.86801 * 119.99949 * 197.73495 * 22 20 19 25 25 H 1.48497 * 109.46902 * 90.00218 * 24 22 20 26 26 H 1.48500 * 109.47215 * 209.99906 * 24 22 20 27 27 H 1.48499 * 109.47086 * 330.00117 * 24 22 20 28 28 C 1.38995 * 120.02289 * 179.72319 * 15 13 12 29 29 H 1.08998 * 109.47002 * 59.99876 * 1 2 3 30 30 H 1.08999 * 109.46904 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46577 * 299.99834 * 1 2 3 32 32 H 1.09003 * 109.47454 * 120.00082 * 2 1 3 33 33 H 1.08995 * 109.46964 * 60.00657 * 3 2 1 34 34 H 1.09004 * 109.46970 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.47309 * 299.99936 * 3 2 1 36 36 H 1.08999 * 110.30436 * 143.34421 * 7 6 4 37 37 H 1.09002 * 110.30434 * 265.41443 * 7 6 4 38 38 H 1.09001 * 111.12595 * 81.47478 * 8 7 6 39 39 H 1.09006 * 111.12581 * 205.59261 * 8 7 6 40 40 H 1.08998 * 109.47447 * 304.99559 * 11 9 4 41 41 H 1.08993 * 109.47453 * 64.99779 * 11 9 4 42 42 H 0.97003 * 120.00382 * 359.97438 * 12 11 9 43 43 H 1.08001 * 119.82094 * 359.97438 * 16 15 13 44 44 H 1.08005 * 119.79220 * 180.02562 * 17 16 15 45 45 H 1.08007 * 119.97854 * 180.02562 * 18 17 16 46 46 H 0.97003 * 119.99838 * 179.97438 * 23 22 20 47 47 H 1.07993 * 120.20562 * 0.02562 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 1.6009 -1.7172 -1.3062 6 8 1.6945 0.0298 -2.4190 7 6 2.8862 0.4480 -3.1034 8 6 3.9740 -0.5713 -2.6810 9 6 3.5794 -0.8275 -1.2009 10 1 4.0008 -0.0621 -0.5491 11 6 4.0150 -2.2248 -0.7553 12 7 5.4719 -2.2572 -0.6048 13 6 6.0843 -3.3938 -0.2178 14 8 5.4277 -4.3918 0.0067 15 6 7.5549 -3.4264 -0.0654 16 6 8.3112 -2.2778 -0.3232 17 6 9.6871 -2.3004 -0.1823 18 6 10.3286 -3.4532 0.2139 19 6 9.5846 -4.6185 0.4777 20 6 10.2403 -5.8036 0.8852 21 1 11.2050 -5.7486 1.3675 22 6 9.6389 -7.0476 0.6633 23 7 8.6675 -7.1588 -0.2060 24 14 10.2233 -8.5493 1.6081 25 1 9.4451 -8.6761 2.8665 26 1 10.0240 -9.7647 0.7784 27 1 11.6652 -8.4011 1.9306 28 6 8.1864 -4.5967 0.3392 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5138 0.8901 32 1 1.8934 -0.5138 0.8900 33 1 1.6768 1.9563 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9564 -0.8900 36 1 2.7345 0.4142 -4.1822 37 1 3.1674 1.4542 -2.7927 38 1 3.9051 -1.4860 -3.2699 39 1 4.9704 -0.1350 -2.7528 40 1 3.5459 -2.4646 0.1989 41 1 3.7107 -2.9562 -1.5038 42 1 5.9960 -1.4609 -0.7844 43 1 7.8180 -1.3686 -0.6339 44 1 10.2618 -1.4084 -0.3833 45 1 11.4032 -3.4629 0.3221 46 1 8.2509 -8.0211 -0.3601 47 1 7.6064 -5.4845 0.5429 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267365404.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:07 Heat of formation + Delta-G solvation = -103.244684 kcal Electronic energy + Delta-G solvation = -26316.716805 eV Core-core repulsion = 22655.320059 eV Total energy + Delta-G solvation = -3661.396746 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.33063 -40.58680 -38.81381 -36.29820 -35.70888 -35.57739 -33.27185 -31.84374 -31.26937 -29.97432 -28.04593 -27.37528 -26.60558 -23.95696 -23.77208 -22.79501 -21.88104 -21.29651 -20.53733 -19.48427 -18.22274 -17.79405 -17.05875 -16.82727 -16.57312 -16.39234 -16.20045 -15.63881 -15.42159 -15.18999 -15.01666 -14.91166 -14.41540 -14.27031 -14.26097 -13.87329 -13.55767 -13.46179 -12.97895 -12.92896 -12.82185 -12.73809 -12.62924 -12.53155 -12.24215 -12.18082 -12.05991 -11.90310 -11.68036 -11.56746 -11.49917 -11.45123 -11.08831 -10.78541 -10.37057 -10.17267 -9.47133 -9.38379 -8.67097 -6.38537 0.37845 1.00876 1.35943 1.47763 1.50240 2.09618 2.18145 2.19585 2.78390 2.87378 3.44064 3.55842 3.70172 3.77528 4.03166 4.06543 4.11492 4.21733 4.24147 4.27718 4.40190 4.44554 4.59797 4.63385 4.70728 4.79509 4.86723 4.86990 4.90267 4.96221 4.97112 5.05973 5.08671 5.08868 5.19202 5.19588 5.23146 5.31276 5.41994 5.44174 5.51053 5.52263 5.86560 5.92513 6.05545 6.10461 6.28907 6.50624 6.68170 6.87764 6.94661 7.29994 8.29606 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021739 B = 0.002645 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.673164 B =10584.405298 C =11149.999817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.109 4.109 3 C -0.143 4.143 4 C 0.095 3.905 5 H 0.073 0.927 6 O -0.387 6.387 7 C 0.050 3.950 8 C -0.152 4.152 9 C -0.121 4.121 10 H 0.112 0.888 11 C 0.134 3.866 12 N -0.709 5.709 13 C 0.560 3.440 14 O -0.590 6.590 15 C -0.139 4.139 16 C -0.195 4.195 17 C -0.096 4.096 18 C -0.217 4.217 19 C 0.066 3.934 20 C -0.498 4.498 21 H 0.084 0.916 22 C 0.029 3.971 23 N -0.825 5.825 24 Si 0.982 3.018 25 H -0.266 1.266 26 H -0.270 1.270 27 H -0.250 1.250 28 C -0.132 4.132 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.101 0.899 40 H 0.061 0.939 41 H 0.054 0.946 42 H 0.414 0.586 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.108 0.892 46 H 0.286 0.714 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.827 16.726 -2.942 20.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.127 4.127 3 C -0.200 4.200 4 C 0.037 3.963 5 H 0.090 0.910 6 O -0.307 6.307 7 C -0.026 4.026 8 C -0.190 4.190 9 C -0.139 4.139 10 H 0.130 0.870 11 C 0.010 3.990 12 N -0.362 5.362 13 C 0.350 3.650 14 O -0.472 6.472 15 C -0.143 4.143 16 C -0.215 4.215 17 C -0.113 4.113 18 C -0.237 4.237 19 C 0.064 3.936 20 C -0.527 4.527 21 H 0.102 0.898 22 C -0.186 4.186 23 N -0.451 5.451 24 Si 0.803 3.197 25 H -0.191 1.191 26 H -0.194 1.194 27 H -0.173 1.173 28 C -0.152 4.152 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.110 0.890 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.120 0.880 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.252 0.748 43 H 0.156 0.844 44 H 0.158 0.842 45 H 0.126 0.874 46 H 0.097 0.903 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -11.686 15.930 -2.990 19.981 hybrid contribution 0.556 -1.011 0.255 1.182 sum -11.130 14.919 -2.734 18.813 Atomic orbital electron populations 1.21741 0.94505 1.01636 1.01966 1.21514 0.96923 0.97583 0.96710 1.21799 1.01014 0.95067 1.02146 1.22662 0.92669 0.94859 0.86133 0.90955 1.88400 1.30697 1.72862 1.38715 1.23488 0.83696 0.97571 0.97832 1.23387 1.01042 1.00324 0.94205 1.22990 0.96114 0.96273 0.98569 0.86998 1.21253 0.79793 0.96962 1.00952 1.45656 1.08007 1.13088 1.69436 1.18749 0.88163 0.82726 0.75390 1.90680 1.67688 1.36090 1.52746 1.19778 0.91522 0.96305 1.06646 1.20849 0.94133 0.96515 1.09984 1.20934 0.94360 0.97453 0.98591 1.21417 0.98700 0.94675 1.08918 1.17953 0.91605 0.93863 0.90192 1.19873 1.05634 0.91022 1.36156 0.89808 1.26856 0.93866 1.03990 0.93881 1.69892 1.20966 1.27883 1.26352 0.85195 0.80053 0.75922 0.78531 1.19132 1.19442 1.17341 1.21446 0.94827 0.96377 1.02577 0.92713 0.93092 0.91965 0.90276 0.92136 0.92207 0.92404 0.88979 0.90778 0.91121 0.88014 0.92085 0.92745 0.74823 0.84371 0.84249 0.87402 0.90342 0.88456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.10 71.98 0.66 -1.59 16 2 C -0.11 -1.76 2.74 -10.79 -0.03 -1.79 16 3 C -0.14 -2.01 8.73 71.98 0.63 -1.38 16 4 C 0.09 1.73 2.81 31.07 0.09 1.82 16 5 H 0.07 1.47 7.82 -2.39 -0.02 1.45 16 6 O -0.39 -7.49 9.73 -148.98 -1.45 -8.94 16 7 C 0.05 0.73 7.71 72.65 0.56 1.29 16 8 C -0.15 -2.36 6.55 32.05 0.21 -2.15 16 9 C -0.12 -2.10 2.35 -9.53 -0.02 -2.12 16 10 H 0.11 1.65 6.07 -2.38 -0.01 1.64 16 11 C 0.13 3.40 4.98 86.38 0.43 3.83 16 12 N -0.71 -21.06 5.44 -465.94 -2.53 -23.60 16 13 C 0.56 24.12 7.77 86.80 0.67 24.80 16 14 O -0.59 -30.63 16.33 -3.88 -0.06 -30.69 16 15 C -0.14 -6.47 5.87 -20.13 -0.12 -6.59 16 16 C -0.20 -7.35 9.55 22.70 0.22 -7.14 16 17 C -0.10 -3.66 10.01 22.18 0.22 -3.44 16 18 C -0.22 -10.01 9.78 22.77 0.22 -9.79 16 19 C 0.07 3.58 5.57 -21.32 -0.12 3.46 16 20 C -0.50 -27.09 9.05 23.47 0.21 -26.88 16 21 H 0.08 4.30 7.91 -2.91 -0.02 4.28 16 22 C 0.03 1.52 5.14 85.26 0.44 1.96 16 23 N -0.83 -46.25 10.96 21.83 0.24 -46.01 16 24 Si 0.98 39.78 29.59 68.60 2.03 41.81 16 25 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 26 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 27 H -0.25 -9.52 7.11 99.48 0.71 -8.82 16 28 C -0.13 -7.29 8.24 23.01 0.19 -7.10 16 29 H 0.05 0.94 7.88 -2.39 -0.02 0.92 16 30 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.06 0.76 6.34 -2.38 -0.02 0.75 16 35 H 0.06 0.86 7.54 -2.39 -0.02 0.84 16 36 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.07 1.30 7.93 -2.39 -0.02 1.28 16 39 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 40 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.05 1.55 7.99 -2.39 -0.02 1.54 16 42 H 0.41 9.57 6.49 -92.71 -0.60 8.97 16 43 H 0.14 3.78 6.38 -2.91 -0.02 3.76 16 44 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 45 H 0.11 4.59 8.06 -2.91 -0.02 4.57 16 46 H 0.29 14.79 8.30 -92.71 -0.77 14.02 16 47 H 0.10 6.04 5.74 -2.91 -0.02 6.02 16 Total: -1.00 -69.15 376.97 3.05 -66.10 By element: Atomic # 1 Polarization: 33.76 SS G_CDS: 0.37 Total: 34.13 kcal Atomic # 6 Polarization: -37.26 SS G_CDS: 4.46 Total: -32.80 kcal Atomic # 7 Polarization: -67.31 SS G_CDS: -2.30 Total: -69.61 kcal Atomic # 8 Polarization: -38.11 SS G_CDS: -1.51 Total: -39.63 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 2.03 Total: 41.81 kcal Total: -69.15 3.05 -66.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267365404.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.145 kcal (2) G-P(sol) polarization free energy of solvation -69.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds