Wall clock time and date at job start Tue Mar 31 2020 11:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47202 * 2 1 4 4 C 1.53005 * 109.47463 * 120.00077 * 2 1 3 5 5 C 1.52997 * 109.47009 * 68.86274 * 4 2 1 6 6 H 1.09005 * 109.71382 * 321.74760 * 5 4 2 7 7 C 1.52877 * 109.61857 * 201.44722 * 5 4 2 8 8 O 1.42964 * 109.30072 * 188.11632 * 7 5 4 9 9 C 1.42964 * 114.16465 * 62.44706 * 8 7 5 10 10 C 1.53297 * 109.22490 * 297.42196 * 9 8 7 11 11 N 1.47148 * 109.68191 * 82.28788 * 5 4 2 12 12 C 1.34774 * 120.98182 * 350.27863 * 11 5 4 13 13 O 1.21588 * 120.00035 * 3.83112 * 12 11 5 14 14 C 1.47640 * 120.00443 * 183.83353 * 12 11 5 15 15 C 1.40008 * 119.89878 * 216.11772 * 14 12 11 16 16 C 1.36323 * 120.11082 * 180.27461 * 15 14 12 17 17 C 1.40886 * 119.88454 * 359.49613 * 16 15 14 18 18 C 1.41111 * 120.09907 * 180.23263 * 17 16 15 19 19 H 1.08004 * 120.00331 * 212.42703 * 18 17 16 20 20 C 1.40232 * 120.00220 * 32.42745 * 18 17 16 21 21 N 1.30644 * 119.99706 * 7.17707 * 20 18 17 22 22 Si 1.86802 * 119.99961 * 187.17778 * 20 18 17 23 23 H 1.48503 * 109.47020 * 60.00439 * 22 20 18 24 24 H 1.48502 * 109.46780 * 179.97438 * 22 20 18 25 25 H 1.48492 * 109.47030 * 300.00077 * 22 20 18 26 26 C 1.40884 * 119.79754 * 0.49970 * 17 16 15 27 27 C 1.36319 * 119.89061 * 359.75526 * 26 17 16 28 28 H 1.09008 * 109.46923 * 300.00061 * 1 2 3 29 29 H 1.09000 * 109.47379 * 59.99635 * 1 2 3 30 30 H 1.08999 * 109.47352 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47313 * 239.99500 * 2 1 3 32 32 H 1.09004 * 109.47046 * 180.02562 * 3 2 1 33 33 H 1.08994 * 109.47007 * 299.99565 * 3 2 1 34 34 H 1.08994 * 109.47037 * 60.00194 * 3 2 1 35 35 H 1.09005 * 109.46882 * 308.86859 * 4 2 1 36 36 H 1.08994 * 109.47492 * 188.86501 * 4 2 1 37 37 H 1.08999 * 109.58377 * 68.10078 * 7 5 4 38 38 H 1.08996 * 109.36741 * 307.99808 * 7 5 4 39 39 H 1.09004 * 109.50957 * 177.49611 * 9 8 7 40 40 H 1.09000 * 109.55167 * 57.37112 * 9 8 7 41 41 H 1.08999 * 109.67834 * 292.58237 * 10 9 8 42 42 H 1.08997 * 109.71222 * 172.04110 * 10 9 8 43 43 H 1.08002 * 119.94620 * 359.97438 * 15 14 12 44 44 H 1.07994 * 120.05338 * 179.74533 * 16 15 14 45 45 H 0.97005 * 119.99794 * 179.97438 * 21 20 18 46 46 H 1.08005 * 120.05419 * 179.77718 * 26 17 16 47 47 H 1.07999 * 119.94203 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.7197 -2.2135 1.1431 6 1 0.7394 -2.3475 0.6856 7 6 1.7223 -2.8396 2.5378 8 8 1.6111 -4.2599 2.4184 9 6 2.7004 -4.8763 1.7275 10 6 2.7443 -4.3544 0.2867 11 7 2.7437 -2.8834 0.3258 12 6 3.6576 -2.1708 -0.3622 13 8 3.6879 -0.9597 -0.2585 14 6 4.6219 -2.8606 -1.2420 15 6 5.9330 -2.3818 -1.3514 16 6 6.8254 -3.0121 -2.1668 17 6 6.4293 -4.1533 -2.8918 18 6 7.3507 -4.8122 -3.7333 19 1 7.0073 -5.2978 -4.6348 20 6 8.7125 -4.8364 -3.3992 21 7 9.1099 -4.3735 -2.2439 22 14 9.9581 -5.5304 -4.6060 23 1 9.9123 -4.7496 -5.8684 24 1 11.3191 -5.4413 -4.0185 25 1 9.6332 -6.9511 -4.8905 26 6 5.1089 -4.6314 -2.7784 27 6 4.2222 -3.9913 -1.9645 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.5531 -0.3071 2.1322 36 1 3.1184 -0.5862 1.3320 37 1 0.8795 -2.4554 3.1123 38 1 2.6540 -2.5888 3.0448 39 1 2.5611 -5.9573 1.7190 40 1 3.6360 -4.6336 2.2313 41 1 1.8690 -4.7075 -0.2584 42 1 3.6505 -4.7082 -0.2050 43 1 6.2366 -1.5089 -0.7927 44 1 7.8354 -2.6396 -2.2537 45 1 10.0518 -4.3906 -2.0126 46 1 4.7998 -5.5038 -3.3351 47 1 3.2097 -4.3568 -1.8773 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270411685.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:21 Heat of formation + Delta-G solvation = -42.736641 kcal Electronic energy + Delta-G solvation = -27667.208507 eV Core-core repulsion = 24008.435587 eV Total energy + Delta-G solvation = -3658.772920 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.56027 -38.16609 -37.43580 -35.77541 -34.44343 -33.72369 -31.82491 -30.09988 -29.55734 -28.13244 -26.94492 -26.00189 -25.77936 -23.06329 -22.56768 -21.07974 -20.77387 -19.84130 -18.78870 -17.55941 -16.82325 -16.21594 -15.89023 -15.46772 -15.22752 -15.12905 -14.61365 -14.53877 -14.17541 -13.71502 -13.62457 -13.12638 -13.06282 -12.78764 -12.67421 -12.28373 -12.21506 -11.99933 -11.83149 -11.68789 -11.63462 -11.28809 -11.26488 -11.25176 -10.99543 -10.91471 -10.55186 -10.45554 -10.29575 -10.12218 -9.97156 -9.82246 -9.54298 -9.39939 -8.36641 -8.11519 -7.72730 -7.44888 -6.92701 -4.62115 2.24420 2.90527 2.96105 2.97731 2.99114 3.30617 3.68227 3.79135 3.84354 4.51660 4.74609 4.97452 5.04147 5.10375 5.25062 5.30524 5.37250 5.43229 5.46893 5.54805 5.60184 5.73624 5.76408 5.83127 5.88685 5.92654 5.98316 6.05463 6.07100 6.12944 6.18720 6.21147 6.41492 6.59302 6.64042 6.77954 6.84314 6.85716 6.99536 7.04966 7.09188 7.12043 7.42515 7.54754 7.73347 7.85005 7.99229 8.08761 8.42356 8.64756 8.73016 8.93407 9.99862 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018530 B = 0.003527 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.678983 B = 7936.408702 C = 8800.258556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.077 4.077 3 C -0.133 4.133 4 C -0.115 4.115 5 C 0.114 3.886 6 H 0.073 0.927 7 C 0.052 3.948 8 O -0.385 6.385 9 C 0.045 3.955 10 C 0.065 3.935 11 N -0.616 5.616 12 C 0.573 3.427 13 O -0.542 6.542 14 C -0.270 4.270 15 C -0.045 4.045 16 C -0.167 4.167 17 C 0.129 3.871 18 C -0.453 4.453 19 H 0.081 0.919 20 C 0.073 3.927 21 N -0.788 5.788 22 Si 0.916 3.084 23 H -0.262 1.262 24 H -0.277 1.277 25 H -0.264 1.264 26 C -0.228 4.228 27 C -0.064 4.064 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.049 0.951 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.042 0.958 34 H 0.040 0.960 35 H 0.045 0.955 36 H 0.110 0.890 37 H 0.099 0.901 38 H 0.054 0.946 39 H 0.103 0.897 40 H 0.056 0.944 41 H 0.068 0.932 42 H 0.120 0.880 43 H 0.095 0.905 44 H 0.121 0.879 45 H 0.285 0.715 46 H 0.098 0.902 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.020 1.497 6.277 11.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.095 4.095 3 C -0.191 4.191 4 C -0.152 4.152 5 C 0.010 3.990 6 H 0.090 0.910 7 C -0.026 4.026 8 O -0.303 6.303 9 C -0.032 4.032 10 C -0.058 4.058 11 N -0.351 5.351 12 C 0.369 3.631 13 O -0.422 6.422 14 C -0.275 4.275 15 C -0.064 4.064 16 C -0.186 4.186 17 C 0.126 3.874 18 C -0.482 4.482 19 H 0.100 0.900 20 C -0.146 4.146 21 N -0.412 5.412 22 Si 0.740 3.260 23 H -0.187 1.187 24 H -0.201 1.201 25 H -0.188 1.188 26 C -0.247 4.247 27 C -0.083 4.083 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.100 0.900 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.128 0.872 37 H 0.117 0.883 38 H 0.072 0.928 39 H 0.121 0.879 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.138 0.862 43 H 0.114 0.886 44 H 0.139 0.861 45 H 0.096 0.904 46 H 0.116 0.884 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.936 2.069 6.552 12.080 hybrid contribution 0.734 -0.402 -0.561 1.007 sum -9.202 1.667 5.991 11.106 Atomic orbital electron populations 1.22029 0.97303 1.00876 1.00890 1.21072 0.92669 0.96428 0.99359 1.21670 1.01972 0.95636 0.99783 1.22170 1.05065 0.91074 0.96903 1.21900 0.91844 0.94018 0.91230 0.90965 1.22979 1.02271 0.81216 0.96093 1.87908 1.45485 1.19840 1.77105 1.23058 0.90109 0.98069 0.91959 1.22838 1.04737 0.80736 0.97496 1.47992 1.32163 1.06160 1.48827 1.18666 0.79268 0.86568 0.78602 1.90653 1.72018 1.13977 1.65596 1.18974 0.95377 1.03473 1.09653 1.20416 0.91858 0.97255 0.96861 1.21051 0.99555 0.96631 1.01386 1.17776 0.91107 0.89199 0.89364 1.19725 0.91391 1.29567 1.07501 0.90043 1.26019 0.99591 0.93703 0.95324 1.69688 1.18289 1.33911 1.19341 0.86233 0.78653 0.80271 0.80863 1.18672 1.20141 1.18815 1.20794 0.95768 1.02445 1.05704 1.20567 0.97520 0.93867 0.96359 0.93382 0.93343 0.93224 0.90033 0.91850 0.93895 0.94118 0.93688 0.87246 0.88317 0.92808 0.87907 0.92588 0.91401 0.86234 0.88648 0.86103 0.90397 0.88422 0.88451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.03 37.15 0.34 -1.54 16 2 C -0.08 -1.13 1.88 -90.62 -0.17 -1.30 16 3 C -0.13 -1.88 9.05 37.16 0.34 -1.55 16 4 C -0.12 -1.65 3.71 -26.73 -0.10 -1.75 16 5 C 0.11 1.60 3.03 -67.64 -0.20 1.40 16 6 H 0.07 1.01 6.17 -51.93 -0.32 0.69 16 7 C 0.05 0.66 6.16 37.09 0.23 0.88 16 8 O -0.39 -5.26 10.74 -35.23 -0.38 -5.64 16 9 C 0.05 0.58 6.98 37.31 0.26 0.84 16 10 C 0.07 0.94 4.95 -3.53 -0.02 0.92 16 11 N -0.62 -10.02 3.03 -166.17 -0.50 -10.52 16 12 C 0.57 11.16 6.73 -12.42 -0.08 11.07 16 13 O -0.54 -11.01 9.56 5.29 0.05 -10.96 16 14 C -0.27 -5.79 5.31 -104.73 -0.56 -6.34 16 15 C -0.04 -1.03 9.54 -39.61 -0.38 -1.41 16 16 C -0.17 -4.12 8.57 -39.27 -0.34 -4.46 16 17 C 0.13 3.18 5.52 -106.80 -0.59 2.59 16 18 C -0.45 -11.15 9.04 -37.74 -0.34 -11.49 16 19 H 0.08 1.91 7.86 -52.48 -0.41 1.49 16 20 C 0.07 1.71 5.29 -17.31 -0.09 1.61 16 21 N -0.79 -19.11 10.90 55.56 0.61 -18.51 16 22 Si 0.92 17.50 29.57 -169.99 -5.03 12.47 16 23 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 24 H -0.28 -5.17 7.11 56.52 0.40 -4.77 16 25 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 26 C -0.23 -5.08 9.73 -39.27 -0.38 -5.46 16 27 C -0.06 -1.31 7.29 -39.61 -0.29 -1.60 16 28 H 0.05 0.53 8.14 -51.92 -0.42 0.10 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.59 6.43 -51.93 -0.33 0.26 16 31 H 0.08 1.46 6.02 -51.93 -0.31 1.15 16 32 H 0.06 1.01 7.47 -51.93 -0.39 0.62 16 33 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.04 0.56 7.95 -51.93 -0.41 0.14 16 36 H 0.11 1.88 5.56 -53.19 -0.30 1.58 16 37 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.05 0.70 8.13 -51.93 -0.42 0.27 16 39 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.90 7.99 -51.93 -0.41 0.49 16 42 H 0.12 1.90 4.62 -51.93 -0.24 1.66 16 43 H 0.10 2.14 8.00 -52.49 -0.42 1.72 16 44 H 0.12 3.10 6.36 -52.49 -0.33 2.76 16 45 H 0.28 6.31 8.29 -40.82 -0.34 5.97 16 46 H 0.10 2.02 8.06 -52.48 -0.42 1.60 16 47 H 0.10 1.72 5.99 -52.49 -0.31 1.40 16 LS Contribution 358.84 15.07 5.41 5.41 Total: -1.00 -26.03 358.84 -9.36 -35.39 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -7.14 Total: 9.94 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: -2.38 Total: -17.58 kcal Atomic # 7 Polarization: -29.13 SS G_CDS: 0.10 Total: -29.03 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -0.33 Total: -16.60 kcal Atomic # 14 Polarization: 17.50 SS G_CDS: -5.03 Total: 12.47 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -26.03 -9.36 -35.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270411685.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.348 kcal (2) G-P(sol) polarization free energy of solvation -26.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds