Wall clock time and date at job start Tue Mar 31 2020 11:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47202 * 2 1 4 4 C 1.53005 * 109.47463 * 120.00077 * 2 1 3 5 5 C 1.52997 * 109.47009 * 68.86274 * 4 2 1 6 6 H 1.09005 * 109.71382 * 321.74760 * 5 4 2 7 7 C 1.52877 * 109.61857 * 201.44722 * 5 4 2 8 8 O 1.42964 * 109.30072 * 188.11632 * 7 5 4 9 9 C 1.42964 * 114.16465 * 62.44706 * 8 7 5 10 10 C 1.53297 * 109.22490 * 297.42196 * 9 8 7 11 11 N 1.47148 * 109.68191 * 82.28788 * 5 4 2 12 12 C 1.34774 * 120.98182 * 350.27863 * 11 5 4 13 13 O 1.21588 * 120.00035 * 3.83112 * 12 11 5 14 14 C 1.47640 * 120.00443 * 183.83353 * 12 11 5 15 15 C 1.40008 * 119.89878 * 216.11772 * 14 12 11 16 16 C 1.36323 * 120.11082 * 180.27461 * 15 14 12 17 17 C 1.40886 * 119.88454 * 359.49613 * 16 15 14 18 18 C 1.41111 * 120.09907 * 180.23263 * 17 16 15 19 19 H 1.08004 * 120.00331 * 212.42703 * 18 17 16 20 20 C 1.40232 * 120.00220 * 32.42745 * 18 17 16 21 21 N 1.30644 * 119.99706 * 7.17707 * 20 18 17 22 22 Si 1.86802 * 119.99961 * 187.17778 * 20 18 17 23 23 H 1.48503 * 109.47020 * 60.00439 * 22 20 18 24 24 H 1.48502 * 109.46780 * 179.97438 * 22 20 18 25 25 H 1.48492 * 109.47030 * 300.00077 * 22 20 18 26 26 C 1.40884 * 119.79754 * 0.49970 * 17 16 15 27 27 C 1.36319 * 119.89061 * 359.75526 * 26 17 16 28 28 H 1.09008 * 109.46923 * 300.00061 * 1 2 3 29 29 H 1.09000 * 109.47379 * 59.99635 * 1 2 3 30 30 H 1.08999 * 109.47352 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47313 * 239.99500 * 2 1 3 32 32 H 1.09004 * 109.47046 * 180.02562 * 3 2 1 33 33 H 1.08994 * 109.47007 * 299.99565 * 3 2 1 34 34 H 1.08994 * 109.47037 * 60.00194 * 3 2 1 35 35 H 1.09005 * 109.46882 * 308.86859 * 4 2 1 36 36 H 1.08994 * 109.47492 * 188.86501 * 4 2 1 37 37 H 1.08999 * 109.58377 * 68.10078 * 7 5 4 38 38 H 1.08996 * 109.36741 * 307.99808 * 7 5 4 39 39 H 1.09004 * 109.50957 * 177.49611 * 9 8 7 40 40 H 1.09000 * 109.55167 * 57.37112 * 9 8 7 41 41 H 1.08999 * 109.67834 * 292.58237 * 10 9 8 42 42 H 1.08997 * 109.71222 * 172.04110 * 10 9 8 43 43 H 1.08002 * 119.94620 * 359.97438 * 15 14 12 44 44 H 1.07994 * 120.05338 * 179.74533 * 16 15 14 45 45 H 0.97005 * 119.99794 * 179.97438 * 21 20 18 46 46 H 1.08005 * 120.05419 * 179.77718 * 26 17 16 47 47 H 1.07999 * 119.94203 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.7197 -2.2135 1.1431 6 1 0.7394 -2.3475 0.6856 7 6 1.7223 -2.8396 2.5378 8 8 1.6111 -4.2599 2.4184 9 6 2.7004 -4.8763 1.7275 10 6 2.7443 -4.3544 0.2867 11 7 2.7437 -2.8834 0.3258 12 6 3.6576 -2.1708 -0.3622 13 8 3.6879 -0.9597 -0.2585 14 6 4.6219 -2.8606 -1.2420 15 6 5.9330 -2.3818 -1.3514 16 6 6.8254 -3.0121 -2.1668 17 6 6.4293 -4.1533 -2.8918 18 6 7.3507 -4.8122 -3.7333 19 1 7.0073 -5.2978 -4.6348 20 6 8.7125 -4.8364 -3.3992 21 7 9.1099 -4.3735 -2.2439 22 14 9.9581 -5.5304 -4.6060 23 1 9.9123 -4.7496 -5.8684 24 1 11.3191 -5.4413 -4.0185 25 1 9.6332 -6.9511 -4.8905 26 6 5.1089 -4.6314 -2.7784 27 6 4.2222 -3.9913 -1.9645 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.5531 -0.3071 2.1322 36 1 3.1184 -0.5862 1.3320 37 1 0.8795 -2.4554 3.1123 38 1 2.6540 -2.5888 3.0448 39 1 2.5611 -5.9573 1.7190 40 1 3.6360 -4.6336 2.2313 41 1 1.8690 -4.7075 -0.2584 42 1 3.6505 -4.7082 -0.2050 43 1 6.2366 -1.5089 -0.7927 44 1 7.8354 -2.6396 -2.2537 45 1 10.0518 -4.3906 -2.0126 46 1 4.7998 -5.5038 -3.3351 47 1 3.2097 -4.3568 -1.8773 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270411685.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:20 Heat of formation + Delta-G solvation = -55.327171 kcal Electronic energy + Delta-G solvation = -27667.754473 eV Core-core repulsion = 24008.435587 eV Total energy + Delta-G solvation = -3659.318886 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.88788 -39.59744 -38.92464 -37.04294 -35.86062 -35.33952 -33.00226 -31.84706 -31.27294 -29.40310 -27.99354 -27.48179 -27.08616 -24.26949 -24.07358 -22.73231 -22.28673 -21.01847 -20.20653 -19.34307 -18.20353 -17.42106 -17.17044 -17.03386 -16.47119 -16.32729 -15.94388 -15.85562 -15.64876 -15.20629 -14.96741 -14.54419 -14.45187 -14.18372 -14.01063 -13.87583 -13.65399 -13.33958 -13.12897 -13.02954 -12.85578 -12.81443 -12.59596 -12.53453 -12.39373 -12.26251 -11.95553 -11.66003 -11.57587 -11.38090 -11.37130 -11.28219 -11.14512 -10.96818 -9.84270 -9.53748 -9.39945 -9.20962 -8.67704 -6.47796 0.52458 1.10814 1.39236 1.44779 1.51090 1.98787 2.10361 2.19381 2.76445 2.85000 3.63342 3.66866 3.76425 3.94671 4.04777 4.16083 4.17841 4.22889 4.33618 4.38777 4.39957 4.40340 4.52421 4.65389 4.69373 4.81566 4.83826 4.85017 4.89842 4.94488 4.97414 5.03901 5.06826 5.16959 5.19198 5.26358 5.29104 5.44267 5.50247 5.61962 5.65249 5.75896 5.88244 5.98609 6.02610 6.08655 6.23482 6.52204 6.59069 6.82330 6.90671 7.43159 8.27087 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018530 B = 0.003527 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.678983 B = 7936.408702 C = 8800.258556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.077 4.077 3 C -0.130 4.130 4 C -0.109 4.109 5 C 0.112 3.888 6 H 0.084 0.916 7 C 0.054 3.946 8 O -0.388 6.388 9 C 0.049 3.951 10 C 0.061 3.939 11 N -0.612 5.612 12 C 0.569 3.431 13 O -0.555 6.555 14 C -0.271 4.271 15 C -0.056 4.056 16 C -0.187 4.187 17 C 0.101 3.899 18 C -0.487 4.487 19 H 0.086 0.914 20 C 0.033 3.967 21 N -0.822 5.822 22 Si 0.987 3.013 23 H -0.260 1.260 24 H -0.270 1.270 25 H -0.256 1.256 26 C -0.236 4.236 27 C -0.051 4.051 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.045 0.955 32 H 0.035 0.965 33 H 0.046 0.954 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.129 0.871 38 H 0.047 0.953 39 H 0.130 0.870 40 H 0.046 0.954 41 H 0.088 0.912 42 H 0.103 0.897 43 H 0.091 0.909 44 H 0.101 0.899 45 H 0.290 0.710 46 H 0.114 0.886 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.366 0.623 7.071 14.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.096 4.096 3 C -0.187 4.187 4 C -0.147 4.147 5 C 0.010 3.990 6 H 0.101 0.899 7 C -0.023 4.023 8 O -0.307 6.307 9 C -0.028 4.028 10 C -0.062 4.062 11 N -0.346 5.346 12 C 0.363 3.637 13 O -0.436 6.436 14 C -0.275 4.275 15 C -0.075 4.075 16 C -0.206 4.206 17 C 0.098 3.902 18 C -0.515 4.515 19 H 0.104 0.896 20 C -0.183 4.183 21 N -0.447 5.447 22 Si 0.808 3.192 23 H -0.185 1.185 24 H -0.194 1.194 25 H -0.180 1.180 26 C -0.255 4.255 27 C -0.070 4.070 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.147 0.853 38 H 0.066 0.934 39 H 0.148 0.852 40 H 0.065 0.935 41 H 0.106 0.894 42 H 0.121 0.879 43 H 0.109 0.891 44 H 0.119 0.881 45 H 0.101 0.899 46 H 0.132 0.868 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.313 1.185 7.367 14.398 hybrid contribution 1.336 -0.048 -0.706 1.512 sum -10.977 1.137 6.661 12.890 Atomic orbital electron populations 1.21943 0.94877 1.01530 1.01962 1.21000 0.94613 0.96064 0.97890 1.21628 1.00174 0.95936 1.00995 1.22022 1.03192 0.91615 0.97830 1.22091 0.91283 0.93742 0.91897 0.89864 1.23080 1.03368 0.80788 0.95093 1.87916 1.45547 1.20238 1.76968 1.23098 0.89744 0.99527 0.90447 1.22957 1.04690 0.79465 0.99040 1.47988 1.31576 1.07036 1.48024 1.18400 0.79875 0.86416 0.79050 1.90686 1.72552 1.14511 1.65876 1.19297 0.95082 1.03521 1.09636 1.20485 0.92866 0.97279 0.96866 1.20944 0.99091 0.97610 1.02974 1.18101 0.92573 0.89472 0.90010 1.20003 0.92549 1.30856 1.08131 0.89623 1.26872 1.01027 0.93588 0.96778 1.69762 1.18983 1.34970 1.20968 0.85163 0.76142 0.79664 0.78280 1.18461 1.19410 1.17979 1.21023 0.95195 1.03140 1.06160 1.20816 0.98642 0.92832 0.94674 0.91498 0.93114 0.92742 0.93703 0.94612 0.93486 0.92058 0.90969 0.90457 0.85286 0.93443 0.85178 0.93526 0.89409 0.87915 0.89056 0.88082 0.89877 0.86845 0.85144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 9.03 71.98 0.65 -2.49 16 2 C -0.08 -2.17 1.88 -10.79 -0.02 -2.19 16 3 C -0.13 -3.59 9.05 71.98 0.65 -2.93 16 4 C -0.11 -2.96 3.71 30.59 0.11 -2.84 16 5 C 0.11 2.89 3.03 44.83 0.14 3.03 16 6 H 0.08 2.02 6.17 -2.38 -0.01 2.01 16 7 C 0.05 1.19 6.16 71.94 0.44 1.63 16 8 O -0.39 -9.29 10.74 -148.98 -1.60 -10.89 16 9 C 0.05 1.13 6.98 72.08 0.50 1.63 16 10 C 0.06 1.62 4.95 86.35 0.43 2.05 16 11 N -0.61 -19.04 3.03 -797.91 -2.41 -21.45 16 12 C 0.57 22.21 6.73 86.73 0.58 22.79 16 13 O -0.55 -23.09 9.56 -3.99 -0.04 -23.12 16 14 C -0.27 -11.79 5.31 -19.94 -0.11 -11.90 16 15 C -0.06 -2.70 9.54 22.25 0.21 -2.49 16 16 C -0.19 -9.74 8.57 22.47 0.19 -9.55 16 17 C 0.10 5.20 5.52 -21.28 -0.12 5.08 16 18 C -0.49 -24.68 9.04 23.46 0.21 -24.47 16 19 H 0.09 4.10 7.86 -2.91 -0.02 4.08 16 20 C 0.03 1.59 5.29 85.35 0.45 2.04 16 21 N -0.82 -41.41 10.90 21.87 0.24 -41.17 16 22 Si 0.99 36.19 29.57 68.60 2.03 38.22 16 23 H -0.26 -9.37 7.11 99.48 0.71 -8.67 16 24 H -0.27 -9.47 7.11 99.48 0.71 -8.76 16 25 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 26 C -0.24 -10.59 9.73 22.47 0.22 -10.37 16 27 C -0.05 -2.06 7.29 22.25 0.16 -1.90 16 28 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 29 H 0.05 1.06 8.14 -2.39 -0.02 1.05 16 30 H 0.05 1.12 6.43 -2.39 -0.02 1.10 16 31 H 0.04 1.60 6.02 -2.39 -0.01 1.58 16 32 H 0.03 1.16 7.47 -2.39 -0.02 1.14 16 33 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.07 1.56 7.95 -2.38 -0.02 1.54 16 36 H 0.08 2.65 5.56 -22.33 -0.12 2.52 16 37 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.05 1.12 8.13 -2.39 -0.02 1.10 16 39 H 0.13 2.30 8.14 -2.38 -0.02 2.28 16 40 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.09 2.03 7.99 -2.39 -0.02 2.01 16 42 H 0.10 3.12 4.62 -2.39 -0.01 3.11 16 43 H 0.09 4.37 8.00 -2.91 -0.02 4.35 16 44 H 0.10 5.57 6.36 -2.91 -0.02 5.55 16 45 H 0.29 13.30 8.29 -92.70 -0.77 12.53 16 46 H 0.11 4.63 8.06 -2.91 -0.02 4.61 16 47 H 0.13 4.33 5.99 -2.91 -0.02 4.32 16 Total: -1.00 -58.92 358.84 3.78 -55.14 By element: Atomic # 1 Polarization: 35.30 SS G_CDS: 0.86 Total: 36.15 kcal Atomic # 6 Polarization: -37.59 SS G_CDS: 4.71 Total: -32.87 kcal Atomic # 7 Polarization: -60.45 SS G_CDS: -2.18 Total: -62.62 kcal Atomic # 8 Polarization: -32.38 SS G_CDS: -1.64 Total: -34.02 kcal Atomic # 14 Polarization: 36.19 SS G_CDS: 2.03 Total: 38.22 kcal Total: -58.92 3.78 -55.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270411685.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.192 kcal (2) G-P(sol) polarization free energy of solvation -58.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds