Wall clock time and date at job start Tue Mar 31 2020 12:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47298 * 2 1 4 4 C 1.52993 * 109.46999 * 120.00080 * 2 1 3 5 5 H 1.09004 * 109.48135 * 60.02015 * 4 2 1 6 6 C 1.53282 * 109.46848 * 180.02562 * 4 2 1 7 7 C 1.53182 * 109.06596 * 177.55778 * 6 4 2 8 8 H 1.08993 * 109.54391 * 183.14571 * 7 6 4 9 9 N 1.46503 * 109.54182 * 62.96836 * 7 6 4 10 10 C 1.34771 * 119.99817 * 155.18090 * 9 7 6 11 11 O 1.21548 * 119.99992 * 359.97438 * 10 9 7 12 12 C 1.47888 * 120.00096 * 179.97438 * 10 9 7 13 13 C 1.39912 * 120.02311 * 359.72460 * 12 10 9 14 14 C 1.38333 * 120.36035 * 180.27186 * 13 12 10 15 15 C 1.37759 * 120.40565 * 0.02562 * 14 13 12 16 16 C 1.40738 * 120.04199 * 359.97438 * 15 14 13 17 17 C 1.41441 * 120.17887 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99716 * 334.98406 * 17 16 15 19 19 C 1.39936 * 120.00034 * 154.97500 * 17 16 15 20 20 N 1.30821 * 120.00045 * 342.58062 * 19 17 16 21 21 Si 1.86798 * 119.99845 * 162.58073 * 19 17 16 22 22 H 1.48507 * 109.47213 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47309 * 120.00107 * 21 19 17 24 24 H 1.48493 * 109.47348 * 240.00205 * 21 19 17 25 25 C 1.38995 * 120.02262 * 179.97438 * 12 10 9 26 26 C 1.53175 * 109.10795 * 303.05921 * 7 6 4 27 27 C 1.53095 * 109.16555 * 57.02323 * 26 7 6 28 28 O 1.42903 * 109.41392 * 302.39272 * 27 26 7 29 29 H 1.08991 * 109.47568 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47435 * 300.00151 * 1 2 3 31 31 H 1.09000 * 109.46833 * 59.99837 * 1 2 3 32 32 H 1.08995 * 109.46918 * 240.00291 * 2 1 3 33 33 H 1.08996 * 109.47518 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47394 * 300.00418 * 3 2 1 35 35 H 1.09001 * 109.47001 * 59.99582 * 3 2 1 36 36 H 1.08999 * 109.50233 * 57.72287 * 6 4 2 37 37 H 1.09004 * 109.63841 * 297.47216 * 6 4 2 38 38 H 0.96998 * 120.00277 * 335.17382 * 9 7 6 39 39 H 1.08001 * 119.82571 * 0.25102 * 13 12 10 40 40 H 1.08000 * 119.79780 * 180.02562 * 14 13 12 41 41 H 1.08005 * 119.97421 * 179.97438 * 15 14 13 42 42 H 0.97004 * 119.99760 * 179.97438 * 20 19 17 43 43 H 1.08001 * 120.20674 * 359.74935 * 25 12 10 44 44 H 1.08992 * 109.52271 * 176.93416 * 26 7 6 45 45 H 1.09009 * 109.52003 * 297.11573 * 26 7 6 46 46 H 1.08995 * 109.47964 * 62.37625 * 27 26 7 47 47 H 1.08996 * 109.47933 * 182.41135 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6770 -1.7491 1.2491 6 6 3.5728 -0.7207 1.2495 7 6 4.0732 -1.3905 2.5330 8 1 5.1616 -1.3446 2.5678 9 7 3.6407 -2.7900 2.5560 10 6 4.3326 -3.6973 3.2733 11 8 5.3156 -3.3545 3.9006 12 6 3.8958 -5.1100 3.2971 13 6 2.7610 -5.5041 2.5798 14 6 2.3429 -6.8225 2.6016 15 6 3.0384 -7.7625 3.3300 16 6 4.1822 -7.3848 4.0578 17 6 4.8982 -8.3475 4.8071 18 1 4.3980 -9.2362 5.1624 19 6 6.2545 -8.1483 5.0878 20 7 6.9447 -7.2781 4.3964 21 14 7.0796 -9.1248 6.4497 22 1 6.0885 -10.0368 7.0753 23 1 8.1955 -9.9227 5.8807 24 1 7.6111 -8.1920 7.4756 25 6 4.6093 -6.0463 4.0362 26 6 3.4902 -0.6541 3.7430 27 6 1.9624 -0.6578 3.6454 28 8 1.5635 -0.0480 2.4161 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 3.9363 0.3061 1.2089 37 1 3.9395 -1.2724 0.3839 38 1 2.8564 -3.0637 2.0552 39 1 2.2081 -4.7749 2.0061 40 1 1.4659 -7.1168 2.0442 41 1 2.7056 -8.7899 3.3425 42 1 7.8848 -7.1398 4.5913 43 1 5.4859 -5.7466 4.5914 44 1 3.7980 -1.1581 4.6591 45 1 3.8522 0.3741 3.7527 46 1 1.5987 -1.6848 3.6766 47 1 1.5435 -0.0980 4.4816 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271569211.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:49 Heat of formation + Delta-G solvation = -85.775067 kcal Electronic energy + Delta-G solvation = -26985.057380 eV Core-core repulsion = 23324.418174 eV Total energy + Delta-G solvation = -3660.639206 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.37380 -38.75748 -37.03739 -35.46630 -34.72023 -33.76409 -31.56212 -30.19752 -29.74141 -29.42573 -27.31007 -25.47749 -25.00738 -23.70241 -22.81288 -21.02252 -20.47390 -19.98599 -19.03461 -17.82594 -16.57792 -16.19349 -16.01955 -15.58403 -15.16280 -15.04519 -14.76488 -14.58057 -14.17486 -13.94950 -13.57747 -13.39183 -13.25884 -12.87865 -12.71130 -12.52617 -12.42340 -12.21780 -12.06039 -11.82291 -11.67525 -11.48598 -11.19760 -11.10708 -11.07112 -10.89712 -10.78607 -10.70622 -10.51478 -10.25616 -10.04089 -9.71681 -9.46669 -9.24745 -9.03952 -8.69408 -7.66066 -7.54616 -6.82377 -4.43982 2.17877 2.78292 3.06532 3.11158 3.12808 3.61202 3.69837 3.83201 3.90385 4.45082 4.60021 4.61588 4.78697 4.87024 4.94995 5.02215 5.10412 5.25715 5.35751 5.49419 5.51649 5.55674 5.57753 5.64965 5.68943 5.74202 5.82431 5.87785 5.93324 5.95649 6.02628 6.08550 6.13113 6.16756 6.23630 6.26331 6.69243 6.85132 6.96549 6.99074 7.17221 7.18583 7.35483 7.66908 7.72940 7.89536 8.06024 8.16307 8.48139 8.77972 8.80718 8.92194 10.12418 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023340 B = 0.003027 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.386085 B = 9248.897206 C = 9890.790987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 C -0.145 4.145 4 C 0.094 3.906 5 H 0.056 0.944 6 C -0.159 4.159 7 C 0.145 3.855 8 H 0.090 0.910 9 N -0.733 5.733 10 C 0.565 3.435 11 O -0.545 6.545 12 C -0.129 4.129 13 C -0.218 4.218 14 C -0.097 4.097 15 C -0.211 4.211 16 C 0.099 3.901 17 C -0.459 4.459 18 H 0.082 0.918 19 C 0.073 3.927 20 N -0.783 5.783 21 Si 0.910 3.090 22 H -0.260 1.260 23 H -0.274 1.274 24 H -0.270 1.270 25 C -0.091 4.091 26 C -0.165 4.165 27 C 0.063 3.937 28 O -0.374 6.374 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.080 0.920 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.063 0.937 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.396 0.604 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.284 0.716 43 H 0.134 0.866 44 H 0.080 0.920 45 H 0.076 0.924 46 H 0.053 0.947 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.235 13.511 -6.463 17.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.106 4.106 3 C -0.203 4.203 4 C 0.036 3.964 5 H 0.074 0.926 6 C -0.197 4.197 7 C 0.039 3.961 8 H 0.108 0.892 9 N -0.388 5.388 10 C 0.356 3.644 11 O -0.423 6.423 12 C -0.132 4.132 13 C -0.238 4.238 14 C -0.115 4.115 15 C -0.231 4.231 16 C 0.096 3.904 17 C -0.488 4.488 18 H 0.100 0.900 19 C -0.146 4.146 20 N -0.408 5.408 21 Si 0.734 3.266 22 H -0.183 1.183 23 H -0.199 1.199 24 H -0.196 1.196 25 C -0.111 4.111 26 C -0.204 4.204 27 C -0.014 4.014 28 O -0.293 6.293 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.098 0.902 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.232 0.768 39 H 0.105 0.895 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.095 0.905 43 H 0.151 0.849 44 H 0.099 0.901 45 H 0.094 0.906 46 H 0.071 0.929 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.377 14.023 -6.052 16.962 hybrid contribution 0.300 -0.847 0.282 0.942 sum -7.078 13.176 -5.770 16.031 Atomic orbital electron populations 1.21772 0.94620 1.01806 1.01995 1.21148 0.96581 0.97010 0.95822 1.21822 1.00895 0.95602 1.01936 1.22121 0.92541 0.95524 0.86196 0.92596 1.22602 0.96669 1.02331 0.98086 1.20846 1.00285 0.81067 0.93860 0.89234 1.46108 1.32378 1.07774 1.52508 1.18859 0.81961 0.86067 0.77525 1.90691 1.26684 1.81237 1.43669 1.19476 0.98567 0.91321 1.03849 1.20311 0.99845 0.95973 1.07720 1.20433 0.98468 0.93304 0.99336 1.21104 1.01069 0.97637 1.03328 1.17610 0.90998 0.91955 0.89825 1.19622 0.94036 1.05726 1.29446 0.90031 1.25966 0.97805 0.95015 0.95830 1.69795 1.09385 1.28518 1.33067 0.86237 0.79362 0.80041 0.80991 1.18329 1.19904 1.19550 1.21634 0.99479 0.91509 0.98495 1.22551 0.96680 1.01205 0.99977 1.22533 0.94085 0.98317 0.86462 1.87884 1.74539 1.53629 1.13275 0.92847 0.91766 0.92928 0.90178 0.92578 0.93066 0.91763 0.89382 0.90236 0.76787 0.89487 0.88917 0.88601 0.90491 0.84873 0.90143 0.90572 0.92886 0.89028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.05 37.16 0.34 -0.91 16 2 C -0.09 -0.77 2.81 -90.62 -0.25 -1.02 16 3 C -0.15 -1.21 8.70 37.16 0.32 -0.88 16 4 C 0.09 0.98 2.20 -26.59 -0.06 0.93 16 5 H 0.06 0.61 6.72 -51.93 -0.35 0.26 16 6 C -0.16 -1.70 4.80 -26.49 -0.13 -1.83 16 7 C 0.14 1.99 2.81 -67.74 -0.19 1.80 16 8 H 0.09 1.40 7.58 -51.93 -0.39 1.00 16 9 N -0.73 -11.84 4.35 -54.56 -0.24 -12.07 16 10 C 0.57 12.10 7.74 -12.31 -0.10 12.01 16 11 O -0.54 -13.38 16.00 5.32 0.09 -13.30 16 12 C -0.13 -3.01 5.87 -105.04 -0.62 -3.62 16 13 C -0.22 -4.54 9.55 -38.92 -0.37 -4.91 16 14 C -0.10 -2.05 10.01 -39.72 -0.40 -2.45 16 15 C -0.21 -4.99 9.78 -38.81 -0.38 -5.37 16 16 C 0.10 2.59 5.57 -106.87 -0.59 2.00 16 17 C -0.46 -12.01 9.05 -37.73 -0.34 -12.35 16 18 H 0.08 2.03 7.90 -52.49 -0.41 1.61 16 19 C 0.07 1.84 5.14 -17.35 -0.09 1.75 16 20 N -0.78 -20.67 10.97 55.55 0.61 -20.06 16 21 Si 0.91 18.70 29.59 -169.99 -5.03 13.67 16 22 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 23 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 24 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 25 C -0.09 -2.41 8.23 -38.44 -0.32 -2.73 16 26 C -0.17 -2.12 5.80 -26.59 -0.15 -2.27 16 27 C 0.06 0.74 6.68 37.21 0.25 0.99 16 28 O -0.37 -4.35 9.06 -35.23 -0.32 -4.67 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.61 7.68 -51.93 -0.40 0.21 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.45 6.38 -51.93 -0.33 0.12 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.60 7.68 -51.93 -0.40 0.20 16 36 H 0.09 0.86 6.32 -51.93 -0.33 0.53 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.40 5.72 5.09 -40.82 -0.21 5.52 16 39 H 0.09 1.50 6.38 -52.49 -0.33 1.17 16 40 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 41 H 0.10 2.10 8.06 -52.48 -0.42 1.68 16 42 H 0.28 6.87 8.30 -40.82 -0.34 6.53 16 43 H 0.13 3.82 5.76 -52.49 -0.30 3.52 16 44 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.08 0.87 8.14 -51.92 -0.42 0.44 16 46 H 0.05 0.68 7.75 -51.93 -0.40 0.27 16 47 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 369.86 15.07 5.57 5.57 Total: -1.00 -29.00 369.86 -9.62 -38.62 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -7.22 Total: 11.10 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: -3.08 Total: -18.87 kcal Atomic # 7 Polarization: -32.50 SS G_CDS: 0.37 Total: -32.13 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -0.23 Total: -17.96 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.00 -9.62 -38.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271569211.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.157 kcal (2) G-P(sol) polarization free energy of solvation -28.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds