Wall clock time and date at job start Tue Mar 31 2020 12:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47298 * 2 1 4 4 C 1.52993 * 109.46999 * 120.00080 * 2 1 3 5 5 H 1.09004 * 109.48135 * 60.02015 * 4 2 1 6 6 C 1.53282 * 109.46848 * 180.02562 * 4 2 1 7 7 C 1.53182 * 109.06596 * 177.55778 * 6 4 2 8 8 H 1.08993 * 109.54391 * 183.14571 * 7 6 4 9 9 N 1.46503 * 109.54182 * 62.96836 * 7 6 4 10 10 C 1.34771 * 119.99817 * 155.18090 * 9 7 6 11 11 O 1.21548 * 119.99992 * 359.97438 * 10 9 7 12 12 C 1.47888 * 120.00096 * 179.97438 * 10 9 7 13 13 C 1.39912 * 120.02311 * 359.72460 * 12 10 9 14 14 C 1.38333 * 120.36035 * 180.27186 * 13 12 10 15 15 C 1.37759 * 120.40565 * 0.02562 * 14 13 12 16 16 C 1.40738 * 120.04199 * 359.97438 * 15 14 13 17 17 C 1.41441 * 120.17887 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99716 * 334.98406 * 17 16 15 19 19 C 1.39936 * 120.00034 * 154.97500 * 17 16 15 20 20 N 1.30821 * 120.00045 * 342.58062 * 19 17 16 21 21 Si 1.86798 * 119.99845 * 162.58073 * 19 17 16 22 22 H 1.48507 * 109.47213 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47309 * 120.00107 * 21 19 17 24 24 H 1.48493 * 109.47348 * 240.00205 * 21 19 17 25 25 C 1.38995 * 120.02262 * 179.97438 * 12 10 9 26 26 C 1.53175 * 109.10795 * 303.05921 * 7 6 4 27 27 C 1.53095 * 109.16555 * 57.02323 * 26 7 6 28 28 O 1.42903 * 109.41392 * 302.39272 * 27 26 7 29 29 H 1.08991 * 109.47568 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47435 * 300.00151 * 1 2 3 31 31 H 1.09000 * 109.46833 * 59.99837 * 1 2 3 32 32 H 1.08995 * 109.46918 * 240.00291 * 2 1 3 33 33 H 1.08996 * 109.47518 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47394 * 300.00418 * 3 2 1 35 35 H 1.09001 * 109.47001 * 59.99582 * 3 2 1 36 36 H 1.08999 * 109.50233 * 57.72287 * 6 4 2 37 37 H 1.09004 * 109.63841 * 297.47216 * 6 4 2 38 38 H 0.96998 * 120.00277 * 335.17382 * 9 7 6 39 39 H 1.08001 * 119.82571 * 0.25102 * 13 12 10 40 40 H 1.08000 * 119.79780 * 180.02562 * 14 13 12 41 41 H 1.08005 * 119.97421 * 179.97438 * 15 14 13 42 42 H 0.97004 * 119.99760 * 179.97438 * 20 19 17 43 43 H 1.08001 * 120.20674 * 359.74935 * 25 12 10 44 44 H 1.08992 * 109.52271 * 176.93416 * 26 7 6 45 45 H 1.09009 * 109.52003 * 297.11573 * 26 7 6 46 46 H 1.08995 * 109.47964 * 62.37625 * 27 26 7 47 47 H 1.08996 * 109.47933 * 182.41135 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6770 -1.7491 1.2491 6 6 3.5728 -0.7207 1.2495 7 6 4.0732 -1.3905 2.5330 8 1 5.1616 -1.3446 2.5678 9 7 3.6407 -2.7900 2.5560 10 6 4.3326 -3.6973 3.2733 11 8 5.3156 -3.3545 3.9006 12 6 3.8958 -5.1100 3.2971 13 6 2.7610 -5.5041 2.5798 14 6 2.3429 -6.8225 2.6016 15 6 3.0384 -7.7625 3.3300 16 6 4.1822 -7.3848 4.0578 17 6 4.8982 -8.3475 4.8071 18 1 4.3980 -9.2362 5.1624 19 6 6.2545 -8.1483 5.0878 20 7 6.9447 -7.2781 4.3964 21 14 7.0796 -9.1248 6.4497 22 1 6.0885 -10.0368 7.0753 23 1 8.1955 -9.9227 5.8807 24 1 7.6111 -8.1920 7.4756 25 6 4.6093 -6.0463 4.0362 26 6 3.4902 -0.6541 3.7430 27 6 1.9624 -0.6578 3.6454 28 8 1.5635 -0.0480 2.4161 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 3.9363 0.3061 1.2089 37 1 3.9395 -1.2724 0.3839 38 1 2.8564 -3.0637 2.0552 39 1 2.2081 -4.7749 2.0061 40 1 1.4659 -7.1168 2.0442 41 1 2.7056 -8.7899 3.3425 42 1 7.8848 -7.1398 4.5913 43 1 5.4859 -5.7466 4.5914 44 1 3.7980 -1.1581 4.6591 45 1 3.8522 0.3741 3.7527 46 1 1.5987 -1.6848 3.6766 47 1 1.5435 -0.0980 4.4816 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271569211.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:48 Heat of formation + Delta-G solvation = -101.586749 kcal Electronic energy + Delta-G solvation = -26985.743026 eV Core-core repulsion = 23324.418174 eV Total energy + Delta-G solvation = -3661.324852 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.58205 -40.20077 -38.78076 -36.45460 -35.86153 -35.58470 -33.04615 -31.47745 -31.22343 -31.02617 -27.96343 -27.26124 -26.13720 -24.62714 -24.42064 -22.82986 -21.54192 -21.34375 -20.24048 -19.56570 -18.04660 -17.35883 -17.14368 -16.87450 -16.78981 -16.43839 -16.13855 -15.81613 -15.50637 -15.13908 -14.95364 -14.67722 -14.54018 -14.29003 -14.18317 -13.88184 -13.49312 -13.35121 -13.22668 -12.96076 -12.80696 -12.77162 -12.65252 -12.56164 -12.40460 -12.19405 -11.90792 -11.87246 -11.64023 -11.53845 -11.51542 -11.12174 -11.09789 -10.78838 -10.46929 -10.10517 -9.48969 -9.40100 -8.68127 -6.39829 0.36132 0.98729 1.35507 1.45169 1.51624 2.08276 2.17958 2.19844 2.77042 2.82044 3.56931 3.67616 3.72278 3.82978 3.94982 4.00701 4.09102 4.18263 4.27910 4.37373 4.42151 4.49668 4.56843 4.65402 4.74979 4.81326 4.85009 4.89270 4.93481 4.97771 5.02921 5.05479 5.07926 5.12299 5.16810 5.17607 5.28687 5.29748 5.47667 5.50717 5.52117 5.59552 5.84358 5.90703 6.03655 6.26925 6.27824 6.48131 6.65217 6.86638 6.92885 7.28589 8.28864 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023340 B = 0.003027 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.386085 B = 9248.897206 C = 9890.790987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 C -0.144 4.144 4 C 0.091 3.909 5 H 0.055 0.945 6 C -0.149 4.149 7 C 0.139 3.861 8 H 0.068 0.932 9 N -0.708 5.708 10 C 0.563 3.437 11 O -0.586 6.586 12 C -0.139 4.139 13 C -0.198 4.198 14 C -0.095 4.095 15 C -0.217 4.217 16 C 0.067 3.933 17 C -0.497 4.497 18 H 0.084 0.916 19 C 0.029 3.971 20 N -0.825 5.825 21 Si 0.982 3.018 22 H -0.251 1.251 23 H -0.264 1.264 24 H -0.271 1.271 25 C -0.129 4.129 26 C -0.161 4.161 27 C 0.067 3.933 28 O -0.375 6.375 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.052 0.948 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.408 0.592 39 H 0.132 0.868 40 H 0.139 0.861 41 H 0.109 0.891 42 H 0.286 0.714 43 H 0.098 0.902 44 H 0.053 0.947 45 H 0.093 0.907 46 H 0.043 0.957 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.397 14.392 -8.210 19.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.104 4.104 3 C -0.201 4.201 4 C 0.033 3.967 5 H 0.073 0.927 6 C -0.186 4.186 7 C 0.035 3.965 8 H 0.086 0.914 9 N -0.362 5.362 10 C 0.353 3.647 11 O -0.468 6.468 12 C -0.143 4.143 13 C -0.218 4.218 14 C -0.112 4.112 15 C -0.237 4.237 16 C 0.065 3.935 17 C -0.526 4.526 18 H 0.102 0.898 19 C -0.186 4.186 20 N -0.451 5.451 21 Si 0.803 3.197 22 H -0.174 1.174 23 H -0.188 1.188 24 H -0.196 1.196 25 C -0.150 4.150 26 C -0.200 4.200 27 C -0.009 4.009 28 O -0.295 6.295 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.112 0.888 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.121 0.879 37 H 0.107 0.893 38 H 0.246 0.754 39 H 0.150 0.850 40 H 0.156 0.844 41 H 0.127 0.873 42 H 0.097 0.903 43 H 0.116 0.884 44 H 0.072 0.928 45 H 0.111 0.889 46 H 0.061 0.939 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -9.594 14.925 -7.841 19.398 hybrid contribution 0.812 -0.992 0.688 1.455 sum -8.781 13.933 -7.152 17.955 Atomic orbital electron populations 1.21755 0.94413 1.01834 1.02041 1.21183 0.96732 0.97217 0.95249 1.21807 1.01075 0.95250 1.01974 1.22264 0.92069 0.95803 0.86576 0.92693 1.22574 0.97017 1.02792 0.96247 1.21056 0.99365 0.79771 0.96345 0.91354 1.45899 1.31586 1.08123 1.50579 1.18718 0.81870 0.86227 0.77897 1.90670 1.28655 1.81753 1.45677 1.19790 0.99080 0.92007 1.03390 1.20800 0.98199 0.97029 1.05734 1.20917 0.99216 0.92738 0.98370 1.21414 1.00254 0.99066 1.02922 1.17952 0.92464 0.92062 0.91005 1.19886 0.95008 1.06362 1.31325 0.89813 1.26851 0.98136 0.95902 0.97692 1.69892 1.09712 1.30556 1.34925 0.85157 0.78424 0.78508 0.77644 1.17429 1.18838 1.19580 1.21431 0.99995 0.92722 1.00831 1.22499 0.97746 1.01593 0.98139 1.22492 0.92926 0.98167 0.87360 1.87908 1.74478 1.53712 1.13358 0.92826 0.92922 0.91723 0.88816 0.92259 0.91925 0.92882 0.87924 0.89299 0.75413 0.85014 0.84362 0.87333 0.90331 0.88399 0.92824 0.88865 0.93851 0.87516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.05 71.98 0.65 -1.38 16 2 C -0.09 -1.22 2.81 -10.80 -0.03 -1.25 16 3 C -0.14 -1.95 8.70 71.98 0.63 -1.33 16 4 C 0.09 1.62 2.20 30.69 0.07 1.69 16 5 H 0.06 1.01 6.72 -2.38 -0.02 0.99 16 6 C -0.15 -2.80 4.80 30.75 0.15 -2.65 16 7 C 0.14 3.70 2.81 45.11 0.13 3.83 16 8 H 0.07 2.15 7.58 -2.39 -0.02 2.13 16 9 N -0.71 -22.08 4.35 -444.81 -1.93 -24.01 16 10 C 0.56 24.50 7.74 86.80 0.67 25.17 16 11 O -0.59 -30.27 16.00 -3.87 -0.06 -30.33 16 12 C -0.14 -6.57 5.87 -20.13 -0.12 -6.68 16 13 C -0.20 -7.71 9.55 22.70 0.22 -7.49 16 14 C -0.09 -3.71 10.01 22.18 0.22 -3.48 16 15 C -0.22 -10.09 9.78 22.77 0.22 -9.86 16 16 C 0.07 3.67 5.57 -21.32 -0.12 3.55 16 17 C -0.50 -27.09 9.05 23.47 0.21 -26.87 16 18 H 0.08 4.32 7.90 -2.91 -0.02 4.30 16 19 C 0.03 1.52 5.14 85.25 0.44 1.96 16 20 N -0.83 -46.18 10.97 21.82 0.24 -45.94 16 21 Si 0.98 39.78 29.59 68.60 2.03 41.81 16 22 H -0.25 -9.68 7.11 99.48 0.71 -8.97 16 23 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 24 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 25 C -0.13 -7.18 8.23 23.01 0.19 -6.99 16 26 C -0.16 -4.01 5.80 30.68 0.18 -3.83 16 27 C 0.07 1.47 6.68 72.01 0.48 1.95 16 28 O -0.38 -7.76 9.06 -148.98 -1.35 -9.11 16 29 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.05 0.87 7.68 -2.39 -0.02 0.85 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.06 0.76 6.38 -2.39 -0.02 0.75 16 34 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.05 0.85 7.68 -2.39 -0.02 0.83 16 36 H 0.10 1.70 6.32 -2.39 -0.02 1.69 16 37 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 38 H 0.41 10.65 5.09 -92.71 -0.47 10.18 16 39 H 0.13 3.90 6.38 -2.91 -0.02 3.88 16 40 H 0.14 4.20 8.06 -2.91 -0.02 4.18 16 41 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 42 H 0.29 14.73 8.30 -92.71 -0.77 13.96 16 43 H 0.10 6.08 5.76 -2.91 -0.02 6.06 16 44 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 46 H 0.04 1.03 7.75 -2.39 -0.02 1.01 16 47 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -67.57 369.86 3.61 -63.96 By element: Atomic # 1 Polarization: 36.80 SS G_CDS: 0.50 Total: 37.29 kcal Atomic # 6 Polarization: -37.86 SS G_CDS: 4.19 Total: -33.68 kcal Atomic # 7 Polarization: -68.26 SS G_CDS: -1.70 Total: -69.95 kcal Atomic # 8 Polarization: -38.03 SS G_CDS: -1.41 Total: -39.44 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 2.03 Total: 41.81 kcal Total: -67.57 3.61 -63.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271569211.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.623 kcal (2) G-P(sol) polarization free energy of solvation -67.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds