Wall clock time and date at job start Tue Mar 31 2020 12:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47001 * 2 1 4 4 C 1.52994 * 109.46991 * 119.99840 * 2 1 3 5 5 H 1.09005 * 109.48144 * 60.02651 * 4 2 1 6 6 C 1.53096 * 109.48312 * 180.02562 * 4 2 1 7 7 C 1.53171 * 109.16487 * 177.59136 * 6 4 2 8 8 H 1.09005 * 109.61831 * 62.93107 * 7 6 4 9 9 N 1.46504 * 109.54590 * 183.15374 * 7 6 4 10 10 C 1.34770 * 120.00225 * 204.55773 * 9 7 6 11 11 O 1.21549 * 120.00034 * 0.02562 * 10 9 7 12 12 C 1.47884 * 119.99833 * 179.97438 * 10 9 7 13 13 C 1.39919 * 120.02966 * 0.02562 * 12 10 9 14 14 C 1.38326 * 120.36152 * 179.97438 * 13 12 10 15 15 C 1.37752 * 120.41133 * 0.02562 * 14 13 12 16 16 C 1.40745 * 120.04163 * 0.03427 * 15 14 13 17 17 C 1.41433 * 120.17930 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00084 * 150.16576 * 17 16 15 19 19 C 1.39938 * 120.00074 * 330.16629 * 17 16 15 20 20 N 1.30825 * 120.00361 * 161.73263 * 19 17 16 21 21 Si 1.86806 * 119.99754 * 341.73356 * 19 17 16 22 22 H 1.48498 * 109.47351 * 95.41221 * 21 19 17 23 23 H 1.48505 * 109.46807 * 215.41463 * 21 19 17 24 24 H 1.48496 * 109.47153 * 335.41017 * 21 19 17 25 25 C 1.38995 * 120.02574 * 180.02562 * 12 10 9 26 26 C 1.53174 * 109.03973 * 303.02111 * 7 6 4 27 27 C 1.53098 * 109.16181 * 56.97932 * 26 7 6 28 28 O 1.42897 * 109.41379 * 302.39043 * 27 26 7 29 29 H 1.08996 * 109.47125 * 300.00445 * 1 2 3 30 30 H 1.09007 * 109.46828 * 60.00228 * 1 2 3 31 31 H 1.08992 * 109.47253 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47465 * 239.99907 * 2 1 3 33 33 H 1.08997 * 109.47442 * 60.00352 * 3 2 1 34 34 H 1.09004 * 109.46919 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.47243 * 299.99410 * 3 2 1 36 36 H 1.08999 * 109.51923 * 57.68571 * 6 4 2 37 37 H 1.09001 * 109.52163 * 297.49995 * 6 4 2 38 38 H 0.97005 * 119.99576 * 24.55105 * 9 7 6 39 39 H 1.07997 * 119.81465 * 359.97438 * 13 12 10 40 40 H 1.08003 * 119.79420 * 180.02562 * 14 13 12 41 41 H 1.08001 * 119.97926 * 180.02562 * 15 14 13 42 42 H 0.97004 * 120.00376 * 179.97438 * 20 19 17 43 43 H 1.08000 * 120.20120 * 359.74201 * 25 12 10 44 44 H 1.09005 * 109.52639 * 176.88644 * 26 7 6 45 45 H 1.09002 * 109.52352 * 297.01542 * 26 7 6 46 46 H 1.08996 * 109.47854 * 62.37682 * 27 26 7 47 47 H 1.09005 * 109.48013 * 182.40962 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6771 -1.7491 1.2492 6 6 3.5709 -0.7208 1.2498 7 6 4.0734 -1.3910 2.5323 8 1 3.7525 -2.4325 2.5509 9 7 5.5364 -1.3281 2.5773 10 6 6.2280 -2.2334 3.2974 11 8 5.6379 -3.1023 3.9092 12 6 7.7048 -2.1702 3.3423 13 6 8.3846 -1.1705 2.6379 14 6 9.7658 -1.1047 2.6756 15 6 10.4880 -2.0224 3.4062 16 6 9.8217 -3.0359 4.1203 17 6 10.5603 -3.9799 4.8710 18 1 10.1281 -4.4235 5.7558 19 6 11.8511 -4.3394 4.4672 20 7 12.6652 -4.9145 5.3146 21 14 12.4117 -3.9978 2.7183 22 1 13.1499 -2.7100 2.6777 23 1 13.3032 -5.0941 2.2614 24 1 11.2277 -3.9181 1.8256 25 6 8.4186 -3.1038 4.0844 26 6 3.4914 -0.6538 3.7423 27 6 1.9635 -0.6569 3.6454 28 8 1.5643 -0.0473 2.4162 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 3.9349 0.3058 1.2086 37 1 3.9357 -1.2726 0.3835 38 1 6.0073 -0.6349 2.0887 39 1 7.8279 -0.4464 2.0617 40 1 10.2812 -0.3290 2.1287 41 1 11.5661 -1.9642 3.4311 42 1 13.5598 -5.1640 5.0346 43 1 7.8979 -3.8747 4.6331 44 1 3.7993 -1.1578 4.6585 45 1 3.8546 0.3738 3.7521 46 1 1.5994 -1.6837 3.6771 47 1 1.5452 -0.0966 4.4817 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271569214.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:54 Heat of formation + Delta-G solvation = -86.809404 kcal Electronic energy + Delta-G solvation = -26353.247804 eV Core-core repulsion = 22692.563746 eV Total energy + Delta-G solvation = -3660.684058 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.32244 -39.11101 -37.35763 -35.58675 -35.00493 -33.73348 -31.83984 -30.40312 -30.26923 -29.89443 -27.41020 -25.53255 -24.87775 -23.83870 -22.85900 -20.90742 -20.58194 -20.27960 -19.76697 -17.94713 -16.73424 -16.43046 -16.15510 -15.76516 -15.39789 -15.08830 -14.80141 -14.66749 -14.41704 -14.07751 -13.83482 -13.69426 -13.56574 -13.16415 -12.78548 -12.75707 -12.69479 -12.27141 -12.06412 -11.97471 -11.86569 -11.64835 -11.31813 -11.10572 -11.07365 -11.01872 -10.88184 -10.79756 -10.57432 -10.43690 -10.04515 -9.87584 -9.73228 -9.41439 -9.14145 -8.88371 -7.90165 -7.79010 -7.03183 -4.58094 1.88010 2.48691 3.03141 3.15172 3.23421 3.37847 3.56163 3.58160 3.90654 4.36003 4.45553 4.52713 4.65529 4.75545 4.85973 4.91131 5.04238 5.10094 5.21783 5.29663 5.32344 5.40781 5.45371 5.47021 5.55887 5.60727 5.66501 5.73405 5.78427 5.82380 5.84455 5.94786 5.99411 6.05884 6.12799 6.17710 6.36444 6.62155 6.63427 6.70073 6.95079 7.03640 7.18119 7.37397 7.46706 7.71982 7.76818 7.98134 8.25385 8.50202 8.65301 8.69754 9.98911 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.028781 B = 0.002568 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.618291 B =10900.861253 C =11398.094818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.087 4.087 3 C -0.146 4.146 4 C 0.100 3.900 5 H 0.060 0.940 6 C -0.160 4.160 7 C 0.146 3.854 8 H 0.086 0.914 9 N -0.729 5.729 10 C 0.565 3.435 11 O -0.548 6.548 12 C -0.109 4.109 13 C -0.216 4.216 14 C -0.083 4.083 15 C -0.222 4.222 16 C 0.081 3.919 17 C -0.442 4.442 18 H 0.094 0.906 19 C 0.083 3.917 20 N -0.803 5.803 21 Si 0.911 3.089 22 H -0.269 1.269 23 H -0.289 1.289 24 H -0.244 1.244 25 C -0.136 4.136 26 C -0.167 4.167 27 C 0.066 3.934 28 O -0.374 6.374 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.051 0.949 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.400 0.600 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.104 0.896 42 H 0.287 0.713 43 H 0.115 0.885 44 H 0.080 0.920 45 H 0.073 0.927 46 H 0.051 0.949 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.615 10.395 -10.268 22.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.105 4.105 3 C -0.204 4.204 4 C 0.041 3.959 5 H 0.078 0.922 6 C -0.198 4.198 7 C 0.041 3.959 8 H 0.104 0.896 9 N -0.382 5.382 10 C 0.355 3.645 11 O -0.426 6.426 12 C -0.112 4.112 13 C -0.236 4.236 14 C -0.101 4.101 15 C -0.241 4.241 16 C 0.078 3.922 17 C -0.470 4.470 18 H 0.112 0.888 19 C -0.136 4.136 20 N -0.426 5.426 21 Si 0.737 3.263 22 H -0.195 1.195 23 H -0.216 1.216 24 H -0.167 1.167 25 C -0.156 4.156 26 C -0.206 4.206 27 C -0.011 4.011 28 O -0.293 6.293 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.236 0.764 39 H 0.113 0.887 40 H 0.117 0.883 41 H 0.121 0.879 42 H 0.097 0.903 43 H 0.133 0.867 44 H 0.099 0.901 45 H 0.091 0.909 46 H 0.070 0.930 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -17.916 9.774 -9.715 22.603 hybrid contribution 1.006 0.182 -0.816 1.308 sum -16.910 9.956 -10.532 22.271 Atomic orbital electron populations 1.21769 0.94583 1.01696 1.02108 1.21147 0.96568 0.97101 0.95721 1.21834 1.00996 0.95514 1.02021 1.22056 0.91848 0.95759 0.86201 0.92248 1.22592 0.96791 1.02435 0.97977 1.20857 0.80629 1.00381 0.94013 0.89604 1.46001 1.06073 1.33561 1.52525 1.18807 0.88133 0.80057 0.77496 1.90691 1.71370 1.36129 1.44418 1.19426 0.90183 0.98975 1.02618 1.20373 0.94148 1.01703 1.07426 1.20512 0.93661 0.97851 0.98106 1.21177 0.98506 0.98284 1.06154 1.17703 0.91598 0.92015 0.90851 1.19521 0.97407 1.20083 1.09995 0.88836 1.26174 0.95299 0.92323 0.99850 1.69690 1.06814 1.30150 1.35983 0.86308 0.79695 0.77525 0.82744 1.19537 1.21637 1.16702 1.21274 0.93620 0.99061 1.01623 1.22626 0.96223 1.01848 0.99896 1.22535 0.93642 0.98234 0.86733 1.87899 1.74519 1.53647 1.13279 0.91723 0.92846 0.92951 0.90147 0.91726 0.92516 0.92983 0.90032 0.90267 0.76434 0.88660 0.88285 0.87878 0.90287 0.86691 0.90115 0.90876 0.93028 0.88647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.05 37.16 0.34 -0.71 16 2 C -0.09 -0.67 2.81 -90.62 -0.25 -0.92 16 3 C -0.15 -1.11 8.70 37.16 0.32 -0.79 16 4 C 0.10 0.90 2.38 -26.68 -0.06 0.84 16 5 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 6 C -0.16 -1.52 4.60 -26.59 -0.12 -1.64 16 7 C 0.15 1.81 2.54 -67.75 -0.17 1.64 16 8 H 0.09 1.21 7.59 -51.93 -0.39 0.82 16 9 N -0.73 -10.57 5.04 -54.56 -0.27 -10.84 16 10 C 0.56 10.89 7.74 -12.31 -0.10 10.79 16 11 O -0.55 -12.10 16.00 5.32 0.09 -12.02 16 12 C -0.11 -2.30 5.87 -105.04 -0.62 -2.92 16 13 C -0.22 -4.13 9.55 -38.92 -0.37 -4.50 16 14 C -0.08 -1.68 10.01 -39.73 -0.40 -2.08 16 15 C -0.22 -5.14 7.17 -38.81 -0.28 -5.41 16 16 C 0.08 2.04 5.10 -106.87 -0.55 1.50 16 17 C -0.44 -11.84 9.57 -37.73 -0.36 -12.20 16 18 H 0.09 2.64 8.06 -52.49 -0.42 2.21 16 19 C 0.08 2.14 5.40 -17.34 -0.09 2.05 16 20 N -0.80 -21.06 13.93 55.55 0.77 -20.29 16 21 Si 0.91 20.25 24.52 -169.99 -4.17 16.08 16 22 H -0.27 -5.74 6.71 56.52 0.38 -5.36 16 23 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.24 -5.55 6.86 56.52 0.39 -5.16 16 25 C -0.14 -3.25 9.34 -38.44 -0.36 -3.61 16 26 C -0.17 -1.95 5.71 -26.59 -0.15 -2.10 16 27 C 0.07 0.65 6.84 37.21 0.25 0.90 16 28 O -0.37 -3.82 9.06 -35.23 -0.32 -4.13 16 29 H 0.06 0.53 7.68 -51.93 -0.40 0.13 16 30 H 0.05 0.34 8.14 -51.92 -0.42 -0.08 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.56 7.68 -51.93 -0.40 0.16 16 34 H 0.06 0.42 6.38 -51.93 -0.33 0.09 16 35 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.08 0.74 6.31 -51.93 -0.33 0.41 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.40 5.00 6.62 -40.82 -0.27 4.73 16 39 H 0.10 1.46 6.38 -52.49 -0.33 1.12 16 40 H 0.10 1.69 8.06 -52.48 -0.42 1.27 16 41 H 0.10 2.37 4.73 -52.49 -0.25 2.12 16 42 H 0.29 6.78 8.30 -40.82 -0.34 6.44 16 43 H 0.12 2.81 7.64 -52.49 -0.40 2.41 16 44 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 45 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 46 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 368.42 15.07 5.55 5.55 Total: -1.00 -28.71 368.42 -8.67 -37.38 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -7.35 Total: 7.44 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: -2.97 Total: -19.17 kcal Atomic # 7 Polarization: -31.63 SS G_CDS: 0.50 Total: -31.13 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.23 Total: -16.15 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.17 Total: 16.08 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.71 -8.67 -37.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271569214.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.431 kcal (2) G-P(sol) polarization free energy of solvation -28.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds