Wall clock time and date at job start Tue Mar 31 2020 12:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47001 * 2 1 4 4 C 1.52994 * 109.46991 * 119.99840 * 2 1 3 5 5 H 1.09005 * 109.48144 * 60.02651 * 4 2 1 6 6 C 1.53096 * 109.48312 * 180.02562 * 4 2 1 7 7 C 1.53171 * 109.16487 * 177.59136 * 6 4 2 8 8 H 1.09005 * 109.61831 * 62.93107 * 7 6 4 9 9 N 1.46504 * 109.54590 * 183.15374 * 7 6 4 10 10 C 1.34770 * 120.00225 * 204.55773 * 9 7 6 11 11 O 1.21549 * 120.00034 * 0.02562 * 10 9 7 12 12 C 1.47884 * 119.99833 * 179.97438 * 10 9 7 13 13 C 1.39919 * 120.02966 * 0.02562 * 12 10 9 14 14 C 1.38326 * 120.36152 * 179.97438 * 13 12 10 15 15 C 1.37752 * 120.41133 * 0.02562 * 14 13 12 16 16 C 1.40745 * 120.04163 * 0.03427 * 15 14 13 17 17 C 1.41433 * 120.17930 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00084 * 150.16576 * 17 16 15 19 19 C 1.39938 * 120.00074 * 330.16629 * 17 16 15 20 20 N 1.30825 * 120.00361 * 161.73263 * 19 17 16 21 21 Si 1.86806 * 119.99754 * 341.73356 * 19 17 16 22 22 H 1.48498 * 109.47351 * 95.41221 * 21 19 17 23 23 H 1.48505 * 109.46807 * 215.41463 * 21 19 17 24 24 H 1.48496 * 109.47153 * 335.41017 * 21 19 17 25 25 C 1.38995 * 120.02574 * 180.02562 * 12 10 9 26 26 C 1.53174 * 109.03973 * 303.02111 * 7 6 4 27 27 C 1.53098 * 109.16181 * 56.97932 * 26 7 6 28 28 O 1.42897 * 109.41379 * 302.39043 * 27 26 7 29 29 H 1.08996 * 109.47125 * 300.00445 * 1 2 3 30 30 H 1.09007 * 109.46828 * 60.00228 * 1 2 3 31 31 H 1.08992 * 109.47253 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47465 * 239.99907 * 2 1 3 33 33 H 1.08997 * 109.47442 * 60.00352 * 3 2 1 34 34 H 1.09004 * 109.46919 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.47243 * 299.99410 * 3 2 1 36 36 H 1.08999 * 109.51923 * 57.68571 * 6 4 2 37 37 H 1.09001 * 109.52163 * 297.49995 * 6 4 2 38 38 H 0.97005 * 119.99576 * 24.55105 * 9 7 6 39 39 H 1.07997 * 119.81465 * 359.97438 * 13 12 10 40 40 H 1.08003 * 119.79420 * 180.02562 * 14 13 12 41 41 H 1.08001 * 119.97926 * 180.02562 * 15 14 13 42 42 H 0.97004 * 120.00376 * 179.97438 * 20 19 17 43 43 H 1.08000 * 120.20120 * 359.74201 * 25 12 10 44 44 H 1.09005 * 109.52639 * 176.88644 * 26 7 6 45 45 H 1.09002 * 109.52352 * 297.01542 * 26 7 6 46 46 H 1.08996 * 109.47854 * 62.37682 * 27 26 7 47 47 H 1.09005 * 109.48013 * 182.40962 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6771 -1.7491 1.2492 6 6 3.5709 -0.7208 1.2498 7 6 4.0734 -1.3910 2.5323 8 1 3.7525 -2.4325 2.5509 9 7 5.5364 -1.3281 2.5773 10 6 6.2280 -2.2334 3.2974 11 8 5.6379 -3.1023 3.9092 12 6 7.7048 -2.1702 3.3423 13 6 8.3846 -1.1705 2.6379 14 6 9.7658 -1.1047 2.6756 15 6 10.4880 -2.0224 3.4062 16 6 9.8217 -3.0359 4.1203 17 6 10.5603 -3.9799 4.8710 18 1 10.1281 -4.4235 5.7558 19 6 11.8511 -4.3394 4.4672 20 7 12.6652 -4.9145 5.3146 21 14 12.4117 -3.9978 2.7183 22 1 13.1499 -2.7100 2.6777 23 1 13.3032 -5.0941 2.2614 24 1 11.2277 -3.9181 1.8256 25 6 8.4186 -3.1038 4.0844 26 6 3.4914 -0.6538 3.7423 27 6 1.9635 -0.6569 3.6454 28 8 1.5643 -0.0473 2.4162 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 3.9349 0.3058 1.2086 37 1 3.9357 -1.2726 0.3835 38 1 6.0073 -0.6349 2.0887 39 1 7.8279 -0.4464 2.0617 40 1 10.2812 -0.3290 2.1287 41 1 11.5661 -1.9642 3.4311 42 1 13.5598 -5.1640 5.0346 43 1 7.8979 -3.8747 4.6331 44 1 3.7993 -1.1578 4.6585 45 1 3.8546 0.3738 3.7521 46 1 1.5994 -1.6837 3.6771 47 1 1.5452 -0.0966 4.4817 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271569214.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:53 Heat of formation + Delta-G solvation = -104.154823 kcal Electronic energy + Delta-G solvation = -26353.999958 eV Core-core repulsion = 22692.563746 eV Total energy + Delta-G solvation = -3661.436212 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.44335 -40.37118 -39.03008 -36.52657 -35.96072 -35.58228 -33.24322 -32.04215 -31.52016 -31.04257 -27.97689 -27.22232 -26.10720 -24.65996 -24.29457 -22.51547 -21.77411 -21.56553 -20.67423 -19.60380 -18.14607 -17.61860 -17.32113 -17.12098 -16.57773 -16.43575 -16.06652 -15.86088 -15.54658 -15.22957 -15.08085 -14.96336 -14.59374 -14.49796 -14.44225 -14.02156 -13.81158 -13.45909 -13.34406 -12.91124 -12.85448 -12.72605 -12.69726 -12.55765 -12.33335 -12.17275 -11.87257 -11.76934 -11.67379 -11.59067 -11.52631 -11.31614 -11.16461 -10.90784 -10.47003 -10.18311 -9.64466 -9.57320 -8.92920 -6.57010 0.16126 0.72811 1.24474 1.40703 1.47573 1.93059 2.10665 2.11564 2.63677 2.82144 3.43491 3.56722 3.75361 3.79683 3.86929 4.04281 4.13417 4.15132 4.24891 4.29405 4.35091 4.38988 4.45921 4.56927 4.65848 4.71259 4.75602 4.85380 4.87311 4.90002 4.92612 4.97525 5.03839 5.10136 5.12016 5.14298 5.20148 5.27620 5.40763 5.44473 5.50234 5.58927 5.63564 5.70158 5.83053 6.09300 6.27604 6.28540 6.55637 6.64535 6.72530 7.21416 8.16123 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.028781 B = 0.002568 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.618291 B =10900.861253 C =11398.094818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 C -0.145 4.145 4 C 0.096 3.904 5 H 0.058 0.942 6 C -0.149 4.149 7 C 0.143 3.857 8 H 0.066 0.934 9 N -0.705 5.705 10 C 0.563 3.437 11 O -0.585 6.585 12 C -0.114 4.114 13 C -0.182 4.182 14 C -0.082 4.082 15 C -0.225 4.225 16 C 0.065 3.935 17 C -0.489 4.489 18 H 0.049 0.951 19 C 0.044 3.956 20 N -0.849 5.849 21 Si 0.968 3.032 22 H -0.246 1.246 23 H -0.278 1.278 24 H -0.251 1.251 25 C -0.167 4.167 26 C -0.162 4.162 27 C 0.069 3.931 28 O -0.379 6.379 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.094 0.906 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.414 0.586 39 H 0.150 0.850 40 H 0.148 0.852 41 H 0.107 0.893 42 H 0.295 0.705 43 H 0.088 0.912 44 H 0.055 0.945 45 H 0.080 0.920 46 H 0.051 0.949 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.552 13.941 -14.181 27.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.104 4.104 3 C -0.202 4.202 4 C 0.038 3.962 5 H 0.076 0.924 6 C -0.187 4.187 7 C 0.038 3.962 8 H 0.084 0.916 9 N -0.357 5.357 10 C 0.352 3.648 11 O -0.466 6.466 12 C -0.117 4.117 13 C -0.201 4.201 14 C -0.100 4.100 15 C -0.244 4.244 16 C 0.062 3.938 17 C -0.518 4.518 18 H 0.067 0.933 19 C -0.170 4.170 20 N -0.475 5.475 21 Si 0.790 3.210 22 H -0.171 1.171 23 H -0.204 1.204 24 H -0.175 1.175 25 C -0.188 4.188 26 C -0.201 4.201 27 C -0.008 4.008 28 O -0.298 6.298 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.112 0.888 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.112 0.888 37 H 0.109 0.891 38 H 0.253 0.747 39 H 0.167 0.833 40 H 0.166 0.834 41 H 0.124 0.876 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.074 0.926 45 H 0.099 0.901 46 H 0.069 0.931 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -18.873 13.366 -13.646 26.853 hybrid contribution 1.037 -0.763 0.356 1.336 sum -17.836 12.604 -13.290 25.566 Atomic orbital electron populations 1.21752 0.94452 1.01766 1.02064 1.21180 0.96690 0.97189 0.95290 1.21817 1.01190 0.95262 1.01915 1.22186 0.91519 0.95990 0.86511 0.92437 1.22549 0.97004 1.02812 0.96357 1.21036 0.79031 0.99921 0.96199 0.91617 1.45818 1.07050 1.32191 1.50657 1.18611 0.87564 0.80606 0.77972 1.90684 1.71767 1.37960 1.46211 1.19710 0.91527 0.98663 1.01777 1.21002 0.94285 1.00296 1.04517 1.21051 0.94133 0.97717 0.97093 1.21392 0.99063 0.98143 1.05827 1.17783 0.91973 0.92461 0.91561 1.19455 0.99082 1.22876 1.10411 0.93301 1.26925 0.94790 0.91914 1.03415 1.69724 1.07646 1.32342 1.37760 0.85451 0.79160 0.78764 0.77582 1.17053 1.20423 1.17475 1.21196 0.93706 1.00354 1.03519 1.22561 0.97627 1.01606 0.98336 1.22527 0.92254 0.98618 0.87388 1.87913 1.74554 1.53833 1.13511 0.92896 0.91767 0.92863 0.88769 0.92973 0.92115 0.92004 0.88765 0.89107 0.74725 0.83288 0.83419 0.87576 0.89418 0.89413 0.92604 0.90139 0.93112 0.87190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.05 71.98 0.65 -1.08 16 2 C -0.09 -1.03 2.81 -10.80 -0.03 -1.06 16 3 C -0.14 -1.70 8.70 71.98 0.63 -1.08 16 4 C 0.10 1.48 2.38 30.62 0.07 1.55 16 5 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 6 C -0.15 -2.32 4.60 30.68 0.14 -2.18 16 7 C 0.14 3.23 2.54 45.11 0.11 3.35 16 8 H 0.07 1.81 7.59 -2.38 -0.02 1.79 16 9 N -0.71 -18.36 5.04 -444.81 -2.24 -20.60 16 10 C 0.56 21.13 7.74 86.80 0.67 21.80 16 11 O -0.58 -26.50 16.00 -3.87 -0.06 -26.56 16 12 C -0.11 -4.65 5.87 -20.13 -0.12 -4.77 16 13 C -0.18 -6.04 9.55 22.70 0.22 -5.82 16 14 C -0.08 -2.91 10.01 22.18 0.22 -2.69 16 15 C -0.22 -10.01 7.17 22.77 0.16 -9.85 16 16 C 0.06 3.35 5.10 -21.32 -0.11 3.24 16 17 C -0.49 -28.24 9.57 23.47 0.22 -28.02 16 18 H 0.05 3.10 8.06 -2.91 -0.02 3.08 16 19 C 0.04 2.37 5.40 85.25 0.46 2.83 16 20 N -0.85 -46.99 13.93 21.82 0.30 -46.68 16 21 Si 0.97 41.61 24.52 68.60 1.68 43.29 16 22 H -0.25 -9.56 6.71 99.48 0.67 -8.89 16 23 H -0.28 -11.29 7.11 99.48 0.71 -10.58 16 24 H -0.25 -10.95 6.86 99.48 0.68 -10.26 16 25 C -0.17 -8.35 9.34 23.01 0.21 -8.13 16 26 C -0.16 -3.55 5.71 30.69 0.18 -3.37 16 27 C 0.07 1.26 6.84 72.01 0.49 1.75 16 28 O -0.38 -6.86 9.06 -148.98 -1.35 -8.21 16 29 H 0.05 0.77 7.68 -2.39 -0.02 0.75 16 30 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 31 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.05 0.75 7.68 -2.39 -0.02 0.73 16 34 H 0.06 0.66 6.38 -2.38 -0.02 0.64 16 35 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.09 1.28 6.31 -2.39 -0.02 1.26 16 37 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.41 8.21 6.62 -92.70 -0.61 7.60 16 39 H 0.15 3.40 6.38 -2.91 -0.02 3.38 16 40 H 0.15 3.93 8.06 -2.91 -0.02 3.90 16 41 H 0.11 4.64 4.73 -2.91 -0.01 4.63 16 42 H 0.30 14.55 8.30 -92.71 -0.77 13.78 16 43 H 0.09 4.72 7.64 -2.91 -0.02 4.70 16 44 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 45 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.11 1.67 8.14 -2.38 -0.02 1.65 16 Total: -1.00 -68.07 368.42 2.82 -65.26 By element: Atomic # 1 Polarization: 26.73 SS G_CDS: 0.29 Total: 27.03 kcal Atomic # 6 Polarization: -37.70 SS G_CDS: 4.19 Total: -33.51 kcal Atomic # 7 Polarization: -65.35 SS G_CDS: -1.94 Total: -67.28 kcal Atomic # 8 Polarization: -33.36 SS G_CDS: -1.41 Total: -34.78 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 1.68 Total: 43.29 kcal Total: -68.07 2.82 -65.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271569214.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.899 kcal (2) G-P(sol) polarization free energy of solvation -68.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds