Wall clock time and date at job start Tue Mar 31 2020 12:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46746 * 2 1 4 4 C 1.53001 * 109.47294 * 120.00180 * 2 1 3 5 5 H 1.08993 * 109.46925 * 54.52198 * 4 2 1 6 6 O 1.42903 * 109.47104 * 294.51752 * 4 2 1 7 7 C 1.53003 * 109.46769 * 174.52281 * 4 2 1 8 8 C 1.53000 * 115.55253 * 302.69976 * 7 4 2 9 9 N 1.46494 * 109.47551 * 182.10155 * 8 7 4 10 10 C 1.34770 * 120.00318 * 179.97438 * 9 8 7 11 11 O 1.21590 * 120.00003 * 0.02562 * 10 9 8 12 12 C 1.47645 * 120.00168 * 179.97438 * 10 9 8 13 13 C 1.40015 * 119.89471 * 180.02562 * 12 10 9 14 14 C 1.36318 * 120.10460 * 180.23480 * 13 12 10 15 15 C 1.40892 * 119.89078 * 359.52527 * 14 13 12 16 16 C 1.41108 * 120.09997 * 180.20518 * 15 14 13 17 17 H 1.08002 * 119.99974 * 208.64295 * 16 15 14 18 18 C 1.40228 * 120.00095 * 28.65026 * 16 15 14 19 19 N 1.30639 * 120.00136 * 12.27167 * 18 16 15 20 20 Si 1.86803 * 119.99781 * 192.26967 * 18 16 15 21 21 H 1.48500 * 109.47391 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.46761 * 119.99921 * 20 18 16 23 23 H 1.48503 * 109.47004 * 239.99547 * 20 18 16 24 24 C 1.40889 * 119.79497 * 0.47582 * 15 14 13 25 25 C 1.36315 * 119.88901 * 359.75494 * 24 15 14 26 26 C 1.53002 * 117.49939 * 88.37075 * 7 4 2 27 27 C 1.53002 * 117.49742 * 157.03130 * 7 4 2 28 28 H 1.09004 * 109.47311 * 305.02280 * 1 2 3 29 29 H 1.08992 * 109.47468 * 65.03240 * 1 2 3 30 30 H 1.09001 * 109.46686 * 185.02883 * 1 2 3 31 31 H 1.08999 * 109.46747 * 240.00671 * 2 1 3 32 32 H 1.08993 * 109.46736 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47225 * 300.00464 * 3 2 1 34 34 H 1.09005 * 109.46680 * 60.00468 * 3 2 1 35 35 H 0.96694 * 114.00489 * 300.00518 * 6 4 2 36 36 H 1.09008 * 109.46751 * 62.10058 * 8 7 4 37 37 H 1.09004 * 109.47070 * 302.10964 * 8 7 4 38 38 H 0.96998 * 119.99544 * 0.02562 * 9 8 7 39 39 H 1.07995 * 119.94551 * 359.96214 * 13 12 10 40 40 H 1.07999 * 120.05210 * 179.74381 * 14 13 12 41 41 H 0.96998 * 120.00270 * 180.02562 * 19 18 16 42 42 H 1.07997 * 120.05324 * 179.72758 * 24 15 14 43 43 H 1.07997 * 119.94805 * 180.02562 * 25 24 15 44 44 H 1.08997 * 117.50118 * 215.00016 * 26 7 4 45 45 H 1.09005 * 117.49765 * 0.02562 * 26 7 4 46 46 H 1.09001 * 117.49986 * 359.97438 * 27 7 4 47 47 H 1.08996 * 117.49615 * 144.97125 * 27 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.5988 -1.7167 1.2996 6 8 1.6717 0.0225 2.4125 7 6 3.5639 -0.8416 1.1821 8 6 4.1155 -1.5611 -0.0503 9 7 5.5749 -1.6449 0.0455 10 6 6.2813 -2.2425 -0.9344 11 8 5.7074 -2.7117 -1.8982 12 6 7.7522 -2.3264 -0.8381 13 6 8.4840 -2.9473 -1.8576 14 6 9.8418 -3.0313 -1.7709 15 6 10.5095 -2.4834 -0.6578 16 6 11.9153 -2.5641 -0.5655 17 1 12.3922 -2.5906 0.4031 18 6 12.6930 -2.6098 -1.7315 19 7 12.1513 -2.3388 -2.8890 20 14 14.5035 -3.0582 -1.6295 21 1 14.8703 -3.3177 -0.2141 22 1 14.7579 -4.2771 -2.4388 23 1 15.3218 -1.9357 -2.1546 24 6 9.7688 -1.8597 0.3656 25 6 8.4110 -1.7846 0.2723 26 6 4.3895 0.3122 1.7550 27 6 4.3170 -1.0222 2.5017 28 1 -0.3634 0.5898 0.8416 29 1 -0.3634 0.4337 -0.9315 30 1 -0.3633 -1.0237 0.0901 31 1 1.8933 -0.5137 -0.8901 32 1 3.1299 1.4426 -0.0005 33 1 1.6765 1.9565 -0.8899 34 1 1.6766 1.9563 0.8901 35 1 2.0301 0.9204 2.4351 36 1 3.8414 -1.0064 -0.9478 37 1 3.6964 -2.5660 -0.1022 38 1 6.0326 -1.2709 0.8145 39 1 7.9715 -3.3641 -2.7120 40 1 10.4051 -3.5141 -2.5558 41 1 12.6892 -2.3708 -3.6956 42 1 10.2760 -1.4421 1.2228 43 1 7.8423 -1.3063 1.0560 44 1 5.3256 0.5586 1.2539 45 1 3.8470 1.1567 2.1801 46 1 3.7269 -1.0549 3.4176 47 1 5.2051 -1.6540 2.4918 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271942706.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:45 Heat of formation + Delta-G solvation = -60.670596 kcal Electronic energy + Delta-G solvation = -26311.778314 eV Core-core repulsion = 22652.227720 eV Total energy + Delta-G solvation = -3659.550595 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.40798 -38.87873 -37.17484 -36.17890 -34.14111 -33.87398 -33.08683 -30.21880 -29.61894 -28.29275 -27.49212 -26.41466 -24.98890 -22.61186 -21.99563 -20.96040 -20.71520 -19.78652 -19.28843 -17.55162 -17.42988 -16.82974 -16.19297 -15.57967 -15.26760 -15.07622 -14.86035 -14.30232 -14.03145 -13.99260 -13.39714 -13.26819 -13.19339 -12.80463 -12.72930 -12.59808 -12.31041 -12.26926 -12.16789 -11.84064 -11.66231 -11.53027 -11.42776 -11.26317 -11.16335 -11.00431 -10.97043 -10.72350 -10.62993 -10.12572 -10.03590 -9.76575 -9.53837 -9.41580 -9.02526 -8.61058 -7.72781 -7.54074 -6.98218 -4.62488 2.20044 2.90076 2.95696 3.00011 3.01101 3.47914 3.67514 3.75073 3.86869 4.08772 4.41117 4.50679 4.57588 4.61144 4.63868 4.77241 4.89139 5.01970 5.34183 5.39739 5.46951 5.49473 5.54006 5.60759 5.66247 5.71927 5.76816 5.81977 5.85903 5.87343 5.92610 5.98417 6.06152 6.07447 6.13205 6.26236 6.80294 6.81954 6.91267 7.03194 7.08077 7.33021 7.42719 7.57738 7.75579 7.86095 8.04233 8.19617 8.42616 8.62508 8.73460 9.02788 9.93843 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.030875 B = 0.002424 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.651875 B =11549.662707 C =11977.707207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.129 4.129 3 C -0.155 4.155 4 C 0.154 3.846 5 H 0.105 0.895 6 O -0.556 6.556 7 C -0.170 4.170 8 C 0.162 3.838 9 N -0.743 5.743 10 C 0.571 3.429 11 O -0.572 6.572 12 C -0.279 4.279 13 C -0.037 4.037 14 C -0.176 4.176 15 C 0.129 3.871 16 C -0.445 4.445 17 H 0.084 0.916 18 C 0.072 3.928 19 N -0.777 5.777 20 Si 0.915 3.085 21 H -0.258 1.258 22 H -0.269 1.269 23 H -0.272 1.272 24 C -0.231 4.231 25 C -0.052 4.052 26 C -0.176 4.176 27 C -0.165 4.165 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.370 0.630 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.396 0.604 39 H 0.101 0.899 40 H 0.122 0.878 41 H 0.286 0.714 42 H 0.098 0.902 43 H 0.087 0.913 44 H 0.100 0.900 45 H 0.095 0.905 46 H 0.104 0.896 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.267 5.949 7.295 17.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.147 4.147 3 C -0.212 4.212 4 C 0.094 3.906 5 H 0.122 0.878 6 O -0.362 6.362 7 C -0.170 4.170 8 C 0.038 3.962 9 N -0.398 5.398 10 C 0.365 3.635 11 O -0.453 6.453 12 C -0.284 4.284 13 C -0.057 4.057 14 C -0.196 4.196 15 C 0.126 3.874 16 C -0.473 4.473 17 H 0.102 0.898 18 C -0.149 4.149 19 N -0.400 5.400 20 Si 0.739 3.261 21 H -0.182 1.182 22 H -0.194 1.194 23 H -0.197 1.197 24 C -0.251 4.251 25 C -0.071 4.071 26 C -0.213 4.213 27 C -0.202 4.202 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.102 0.898 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.220 0.780 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.233 0.767 39 H 0.119 0.881 40 H 0.140 0.860 41 H 0.097 0.903 42 H 0.116 0.884 43 H 0.105 0.895 44 H 0.119 0.881 45 H 0.113 0.887 46 H 0.122 0.878 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -14.939 5.105 6.499 17.073 hybrid contribution 1.376 0.632 0.108 1.519 sum -13.563 5.737 6.607 16.140 Atomic orbital electron populations 1.21767 0.94581 1.01937 1.01695 1.21802 0.96538 0.97332 0.99077 1.21920 1.01948 0.95586 1.01773 1.21287 0.89380 0.95411 0.84493 0.87774 1.86577 1.76531 1.30034 1.43102 1.22536 0.95123 1.03587 0.95796 1.20505 0.81117 0.99559 0.95037 1.46021 1.06249 1.62322 1.25243 1.18601 0.87933 0.75965 0.80979 1.90644 1.72434 1.49459 1.32802 1.18932 0.90068 1.18270 1.01095 1.20500 0.94048 0.95419 0.95714 1.21054 0.92418 1.04806 1.01301 1.17808 0.93266 0.85924 0.90439 1.19845 0.91499 1.42184 0.93790 0.89785 1.26088 1.01884 0.92209 0.94711 1.69726 1.38725 1.31936 0.99655 0.86139 0.80906 0.79089 0.79979 1.18168 1.19432 1.19697 1.20713 0.93275 1.08710 1.02378 1.20339 0.94637 0.97072 0.95051 1.23106 1.02099 0.92201 1.03863 1.23109 1.02368 0.99386 0.95342 0.92302 0.92798 0.92699 0.89827 0.91589 0.92360 0.92821 0.78032 0.91344 0.91527 0.76685 0.88119 0.86039 0.90296 0.88429 0.89508 0.88123 0.88695 0.87790 0.88401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.04 37.16 0.34 -0.78 16 2 C -0.13 -1.09 2.57 -90.62 -0.23 -1.32 16 3 C -0.16 -1.20 8.23 37.16 0.31 -0.90 16 4 C 0.15 1.39 2.91 -26.73 -0.08 1.32 16 5 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 6 O -0.56 -4.99 11.93 -35.23 -0.42 -5.41 16 7 C -0.17 -1.71 1.76 -154.50 -0.27 -1.99 16 8 C 0.16 2.18 5.32 -4.05 -0.02 2.16 16 9 N -0.74 -11.91 4.94 -61.31 -0.30 -12.21 16 10 C 0.57 12.00 7.76 -12.42 -0.10 11.90 16 11 O -0.57 -13.64 16.32 5.29 0.09 -13.55 16 12 C -0.28 -6.32 5.89 -104.73 -0.62 -6.94 16 13 C -0.04 -0.91 9.52 -39.61 -0.38 -1.29 16 14 C -0.18 -4.50 8.60 -39.27 -0.34 -4.84 16 15 C 0.13 3.26 5.55 -106.80 -0.59 2.67 16 16 C -0.45 -11.03 9.05 -37.75 -0.34 -11.37 16 17 H 0.08 1.97 7.88 -52.49 -0.41 1.56 16 18 C 0.07 1.69 5.22 -17.31 -0.09 1.60 16 19 N -0.78 -19.06 10.90 55.56 0.61 -18.45 16 20 Si 0.92 17.45 29.58 -169.99 -5.03 12.42 16 21 H -0.26 -4.86 7.11 56.52 0.40 -4.45 16 22 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 23 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 24 C -0.23 -5.29 9.73 -39.27 -0.38 -5.67 16 25 C -0.05 -1.09 9.47 -39.61 -0.38 -1.46 16 26 C -0.18 -1.61 7.30 -26.69 -0.19 -1.81 16 27 C -0.17 -1.64 9.17 -26.69 -0.24 -1.89 16 28 H 0.06 0.46 7.97 -51.93 -0.41 0.05 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.79 6.66 -51.93 -0.35 0.44 16 32 H 0.07 0.56 6.12 -51.93 -0.32 0.24 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.05 0.35 6.71 -51.93 -0.35 0.00 16 35 H 0.37 2.51 5.29 45.56 0.24 2.76 16 36 H 0.07 0.96 6.97 -51.92 -0.36 0.60 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.40 5.66 3.58 -40.82 -0.15 5.51 16 39 H 0.10 2.43 7.63 -52.49 -0.40 2.03 16 40 H 0.12 3.17 6.25 -52.49 -0.33 2.85 16 41 H 0.29 6.32 8.29 -40.82 -0.34 5.98 16 42 H 0.10 2.05 8.06 -52.49 -0.42 1.62 16 43 H 0.09 1.49 6.37 -52.49 -0.33 1.16 16 44 H 0.10 1.03 7.15 -51.93 -0.37 0.66 16 45 H 0.09 0.69 6.35 -51.93 -0.33 0.36 16 46 H 0.10 0.99 7.75 -51.93 -0.40 0.59 16 47 H 0.10 1.06 6.87 -51.93 -0.36 0.70 16 LS Contribution 368.71 15.07 5.56 5.56 Total: -1.00 -28.48 368.71 -9.42 -37.90 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: -6.30 Total: 14.35 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: -3.61 Total: -20.61 kcal Atomic # 7 Polarization: -30.96 SS G_CDS: 0.30 Total: -30.66 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.33 Total: -18.96 kcal Atomic # 14 Polarization: 17.45 SS G_CDS: -5.03 Total: 12.42 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.48 -9.42 -37.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271942706.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.770 kcal (2) G-P(sol) polarization free energy of solvation -28.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds