Wall clock time and date at job start Tue Mar 31 2020 12:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46746 * 2 1 4 4 C 1.53001 * 109.47294 * 120.00180 * 2 1 3 5 5 H 1.08993 * 109.46925 * 54.52198 * 4 2 1 6 6 O 1.42903 * 109.47104 * 294.51752 * 4 2 1 7 7 C 1.53003 * 109.46769 * 174.52281 * 4 2 1 8 8 C 1.53000 * 115.55253 * 302.69976 * 7 4 2 9 9 N 1.46494 * 109.47551 * 182.10155 * 8 7 4 10 10 C 1.34770 * 120.00318 * 179.97438 * 9 8 7 11 11 O 1.21590 * 120.00003 * 0.02562 * 10 9 8 12 12 C 1.47645 * 120.00168 * 179.97438 * 10 9 8 13 13 C 1.40015 * 119.89471 * 180.02562 * 12 10 9 14 14 C 1.36318 * 120.10460 * 180.23480 * 13 12 10 15 15 C 1.40892 * 119.89078 * 359.52527 * 14 13 12 16 16 C 1.41108 * 120.09997 * 180.20518 * 15 14 13 17 17 H 1.08002 * 119.99974 * 208.64295 * 16 15 14 18 18 C 1.40228 * 120.00095 * 28.65026 * 16 15 14 19 19 N 1.30639 * 120.00136 * 12.27167 * 18 16 15 20 20 Si 1.86803 * 119.99781 * 192.26967 * 18 16 15 21 21 H 1.48500 * 109.47391 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.46761 * 119.99921 * 20 18 16 23 23 H 1.48503 * 109.47004 * 239.99547 * 20 18 16 24 24 C 1.40889 * 119.79497 * 0.47582 * 15 14 13 25 25 C 1.36315 * 119.88901 * 359.75494 * 24 15 14 26 26 C 1.53002 * 117.49939 * 88.37075 * 7 4 2 27 27 C 1.53002 * 117.49742 * 157.03130 * 7 4 2 28 28 H 1.09004 * 109.47311 * 305.02280 * 1 2 3 29 29 H 1.08992 * 109.47468 * 65.03240 * 1 2 3 30 30 H 1.09001 * 109.46686 * 185.02883 * 1 2 3 31 31 H 1.08999 * 109.46747 * 240.00671 * 2 1 3 32 32 H 1.08993 * 109.46736 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47225 * 300.00464 * 3 2 1 34 34 H 1.09005 * 109.46680 * 60.00468 * 3 2 1 35 35 H 0.96694 * 114.00489 * 300.00518 * 6 4 2 36 36 H 1.09008 * 109.46751 * 62.10058 * 8 7 4 37 37 H 1.09004 * 109.47070 * 302.10964 * 8 7 4 38 38 H 0.96998 * 119.99544 * 0.02562 * 9 8 7 39 39 H 1.07995 * 119.94551 * 359.96214 * 13 12 10 40 40 H 1.07999 * 120.05210 * 179.74381 * 14 13 12 41 41 H 0.96998 * 120.00270 * 180.02562 * 19 18 16 42 42 H 1.07997 * 120.05324 * 179.72758 * 24 15 14 43 43 H 1.07997 * 119.94805 * 180.02562 * 25 24 15 44 44 H 1.08997 * 117.50118 * 215.00016 * 26 7 4 45 45 H 1.09005 * 117.49765 * 0.02562 * 26 7 4 46 46 H 1.09001 * 117.49986 * 359.97438 * 27 7 4 47 47 H 1.08996 * 117.49615 * 144.97125 * 27 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.5988 -1.7167 1.2996 6 8 1.6717 0.0225 2.4125 7 6 3.5639 -0.8416 1.1821 8 6 4.1155 -1.5611 -0.0503 9 7 5.5749 -1.6449 0.0455 10 6 6.2813 -2.2425 -0.9344 11 8 5.7074 -2.7117 -1.8982 12 6 7.7522 -2.3264 -0.8381 13 6 8.4840 -2.9473 -1.8576 14 6 9.8418 -3.0313 -1.7709 15 6 10.5095 -2.4834 -0.6578 16 6 11.9153 -2.5641 -0.5655 17 1 12.3922 -2.5906 0.4031 18 6 12.6930 -2.6098 -1.7315 19 7 12.1513 -2.3388 -2.8890 20 14 14.5035 -3.0582 -1.6295 21 1 14.8703 -3.3177 -0.2141 22 1 14.7579 -4.2771 -2.4388 23 1 15.3218 -1.9357 -2.1546 24 6 9.7688 -1.8597 0.3656 25 6 8.4110 -1.7846 0.2723 26 6 4.3895 0.3122 1.7550 27 6 4.3170 -1.0222 2.5017 28 1 -0.3634 0.5898 0.8416 29 1 -0.3634 0.4337 -0.9315 30 1 -0.3633 -1.0237 0.0901 31 1 1.8933 -0.5137 -0.8901 32 1 3.1299 1.4426 -0.0005 33 1 1.6765 1.9565 -0.8899 34 1 1.6766 1.9563 0.8901 35 1 2.0301 0.9204 2.4351 36 1 3.8414 -1.0064 -0.9478 37 1 3.6964 -2.5660 -0.1022 38 1 6.0326 -1.2709 0.8145 39 1 7.9715 -3.3641 -2.7120 40 1 10.4051 -3.5141 -2.5558 41 1 12.6892 -2.3708 -3.6956 42 1 10.2760 -1.4421 1.2228 43 1 7.8423 -1.3063 1.0560 44 1 5.3256 0.5586 1.2539 45 1 3.8470 1.1567 2.1801 46 1 3.7269 -1.0549 3.4176 47 1 5.2051 -1.6540 2.4918 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271942706.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:44 Heat of formation + Delta-G solvation = -76.665096 kcal Electronic energy + Delta-G solvation = -26312.471888 eV Core-core repulsion = 22652.227720 eV Total energy + Delta-G solvation = -3660.244168 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.41897 -40.33909 -38.88982 -37.17900 -35.67249 -34.86521 -34.38129 -32.00864 -31.41657 -29.34116 -28.13080 -27.84746 -26.30281 -23.70454 -23.35445 -22.71565 -21.54861 -21.34120 -20.20359 -19.35714 -18.80762 -17.68193 -17.25675 -17.06492 -16.40856 -16.34929 -16.19347 -15.75234 -15.48056 -15.00022 -14.92153 -14.62685 -14.19058 -14.10717 -14.03737 -13.90072 -13.58015 -13.42245 -13.25864 -12.90531 -12.87811 -12.83933 -12.63485 -12.39289 -12.37656 -12.23091 -11.86866 -11.75286 -11.68601 -11.54404 -11.36677 -11.18394 -10.96472 -10.75953 -10.51646 -10.01573 -9.58811 -9.38130 -8.75350 -6.50428 0.40854 1.12601 1.38282 1.41391 1.55111 2.10647 2.17612 2.31214 2.69324 2.79819 3.36666 3.63193 3.66992 3.68671 3.85904 3.87940 4.06024 4.12877 4.20521 4.27369 4.36696 4.39297 4.57932 4.69126 4.74606 4.78216 4.84958 4.89785 4.92699 4.96644 5.01421 5.03570 5.04890 5.11699 5.18888 5.22464 5.23654 5.24296 5.43534 5.45837 5.53291 5.58537 5.75737 5.93859 6.00468 6.19479 6.55823 6.65397 6.76024 6.76835 6.87806 7.39761 8.19746 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.030875 B = 0.002424 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.651875 B =11549.662707 C =11977.707207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.128 4.128 3 C -0.154 4.154 4 C 0.162 3.838 5 H 0.099 0.901 6 O -0.559 6.559 7 C -0.170 4.170 8 C 0.161 3.839 9 N -0.721 5.721 10 C 0.570 3.430 11 O -0.606 6.606 12 C -0.289 4.289 13 C -0.051 4.051 14 C -0.197 4.197 15 C 0.101 3.899 16 C -0.473 4.473 17 H 0.092 0.908 18 C 0.030 3.970 19 N -0.812 5.812 20 Si 0.991 3.009 21 H -0.251 1.251 22 H -0.266 1.266 23 H -0.264 1.264 24 C -0.241 4.241 25 C -0.039 4.039 26 C -0.165 4.165 27 C -0.166 4.166 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.381 0.619 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.407 0.593 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.294 0.706 42 H 0.118 0.882 43 H 0.131 0.869 44 H 0.093 0.907 45 H 0.120 0.880 46 H 0.112 0.888 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.596 7.346 9.424 18.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.147 4.147 3 C -0.211 4.211 4 C 0.103 3.897 5 H 0.117 0.883 6 O -0.367 6.367 7 C -0.170 4.170 8 C 0.038 3.962 9 N -0.376 5.376 10 C 0.363 3.637 11 O -0.490 6.490 12 C -0.293 4.293 13 C -0.071 4.071 14 C -0.216 4.216 15 C 0.098 3.902 16 C -0.501 4.501 17 H 0.110 0.890 18 C -0.187 4.187 19 N -0.436 5.436 20 Si 0.810 3.190 21 H -0.174 1.174 22 H -0.191 1.191 23 H -0.189 1.189 24 C -0.260 4.260 25 C -0.058 4.058 26 C -0.201 4.201 27 C -0.203 4.203 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.232 0.768 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.246 0.754 39 H 0.110 0.890 40 H 0.122 0.878 41 H 0.105 0.895 42 H 0.136 0.864 43 H 0.148 0.852 44 H 0.111 0.889 45 H 0.138 0.862 46 H 0.131 0.869 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -15.295 6.533 8.670 18.756 hybrid contribution 1.355 0.227 -0.544 1.478 sum -13.940 6.760 8.126 17.495 Atomic orbital electron populations 1.21743 0.94023 1.01946 1.02013 1.21773 0.96986 0.97704 0.98210 1.21909 1.01458 0.95083 1.02608 1.21142 0.88332 0.95419 0.84848 0.88344 1.86574 1.76561 1.30826 1.42776 1.22379 0.95895 1.04353 0.94417 1.20596 0.79188 0.99648 0.96811 1.45815 1.07381 1.60333 1.24024 1.18426 0.87507 0.76263 0.81493 1.90626 1.72845 1.51130 1.34418 1.19201 0.91272 1.17770 1.01056 1.20563 0.93971 0.96189 0.96360 1.20971 0.92768 1.06154 1.01715 1.18171 0.94209 0.86655 0.91136 1.20151 0.91735 1.43418 0.94746 0.89032 1.27009 1.06455 0.91336 0.93904 1.69788 1.40745 1.32480 1.00569 0.85021 0.74924 0.78824 0.80192 1.17446 1.19073 1.18911 1.20989 0.94111 1.08478 1.02421 1.20654 0.94295 0.95703 0.95147 1.23195 1.01599 0.92564 1.02785 1.23130 1.02005 0.99770 0.95345 0.91993 0.92445 0.92883 0.91218 0.92261 0.92432 0.91172 0.76797 0.91848 0.92387 0.75393 0.89035 0.87798 0.89545 0.86421 0.85154 0.88895 0.86215 0.86924 0.89246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.04 71.98 0.65 -1.32 16 2 C -0.13 -1.97 2.57 -10.79 -0.03 -2.00 16 3 C -0.15 -2.04 8.23 71.98 0.59 -1.45 16 4 C 0.16 2.62 2.91 30.60 0.09 2.71 16 5 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 6 O -0.56 -8.38 11.93 -148.98 -1.78 -10.15 16 7 C -0.17 -3.09 1.76 -52.18 -0.09 -3.18 16 8 C 0.16 4.18 5.32 86.38 0.46 4.64 16 9 N -0.72 -22.18 4.94 -466.16 -2.30 -24.48 16 10 C 0.57 23.87 7.76 86.73 0.67 24.54 16 11 O -0.61 -29.41 16.32 -4.00 -0.07 -29.47 16 12 C -0.29 -13.09 5.89 -19.93 -0.12 -13.21 16 13 C -0.05 -2.61 9.52 22.25 0.21 -2.40 16 14 C -0.20 -10.46 8.60 22.47 0.19 -10.26 16 15 C 0.10 5.23 5.55 -21.28 -0.12 5.11 16 16 C -0.47 -23.68 9.05 23.46 0.21 -23.47 16 17 H 0.09 4.29 7.88 -2.91 -0.02 4.27 16 18 C 0.03 1.44 5.22 85.35 0.45 1.88 16 19 N -0.81 -40.84 10.90 21.87 0.24 -40.60 16 20 Si 0.99 35.53 29.58 68.60 2.03 37.56 16 21 H -0.25 -8.65 7.11 99.48 0.71 -7.94 16 22 H -0.27 -9.32 7.11 99.48 0.71 -8.61 16 23 H -0.26 -9.11 7.11 99.48 0.71 -8.40 16 24 C -0.24 -10.82 9.73 22.47 0.22 -10.60 16 25 C -0.04 -1.59 9.47 22.25 0.21 -1.38 16 26 C -0.16 -2.51 7.30 30.62 0.22 -2.29 16 27 C -0.17 -2.84 9.17 30.62 0.28 -2.56 16 28 H 0.06 0.84 7.97 -2.38 -0.02 0.82 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.07 1.27 6.66 -2.39 -0.02 1.26 16 32 H 0.06 0.87 6.12 -2.39 -0.01 0.86 16 33 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.07 0.69 6.71 -2.38 -0.02 0.68 16 35 H 0.38 3.77 5.29 -74.06 -0.39 3.38 16 36 H 0.06 1.75 6.97 -2.38 -0.02 1.73 16 37 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.41 10.65 3.58 -92.71 -0.33 10.32 16 39 H 0.09 4.68 7.63 -2.91 -0.02 4.66 16 40 H 0.10 5.77 6.25 -2.91 -0.02 5.75 16 41 H 0.29 13.26 8.29 -92.71 -0.77 12.49 16 42 H 0.12 4.73 8.06 -2.91 -0.02 4.70 16 43 H 0.13 4.04 6.37 -2.91 -0.02 4.02 16 44 H 0.09 1.62 7.15 -2.39 -0.02 1.60 16 45 H 0.12 1.25 6.35 -2.38 -0.02 1.23 16 46 H 0.11 1.79 7.75 -2.39 -0.02 1.77 16 47 H 0.09 1.70 6.87 -2.39 -0.02 1.69 16 Total: -1.00 -63.06 368.71 2.50 -60.55 By element: Atomic # 1 Polarization: 41.54 SS G_CDS: 0.28 Total: 41.81 kcal Atomic # 6 Polarization: -39.33 SS G_CDS: 4.11 Total: -35.22 kcal Atomic # 7 Polarization: -63.02 SS G_CDS: -2.07 Total: -65.08 kcal Atomic # 8 Polarization: -37.78 SS G_CDS: -1.84 Total: -39.63 kcal Atomic # 14 Polarization: 35.53 SS G_CDS: 2.03 Total: 37.56 kcal Total: -63.06 2.50 -60.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271942706.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.111 kcal (2) G-P(sol) polarization free energy of solvation -63.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds