Wall clock time and date at job start Tue Mar 31 2020 11:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47249 * 2 1 4 4 C 1.53007 * 109.46712 * 240.00356 * 2 1 3 5 5 C 1.52993 * 109.47266 * 120.00665 * 2 1 3 6 6 H 1.09002 * 109.51091 * 299.89205 * 5 2 1 7 7 C 1.52882 * 109.58373 * 179.87835 * 5 2 1 8 8 N 1.47152 * 108.60754 * 187.91695 * 7 5 2 9 9 C 1.34771 * 120.98639 * 230.49913 * 8 7 5 10 10 O 1.21552 * 120.00018 * 355.64105 * 9 8 7 11 11 C 1.47884 * 120.00463 * 175.63714 * 9 8 7 12 12 C 1.39921 * 120.02207 * 39.88358 * 11 9 8 13 13 C 1.38330 * 120.35611 * 180.27782 * 12 11 9 14 14 C 1.37748 * 120.41344 * 359.97438 * 13 12 11 15 15 C 1.40751 * 120.04228 * 0.02562 * 14 13 12 16 16 C 1.41440 * 120.17953 * 179.97438 * 15 14 13 17 17 H 1.07995 * 119.99971 * 27.42393 * 16 15 14 18 18 C 1.39931 * 119.99789 * 207.42474 * 16 15 14 19 19 N 1.30830 * 120.00581 * 14.85745 * 18 16 15 20 20 Si 1.86805 * 119.99926 * 194.85878 * 18 16 15 21 21 H 1.48507 * 109.46880 * 90.00003 * 20 18 16 22 22 H 1.48493 * 109.47156 * 209.99993 * 20 18 16 23 23 H 1.48492 * 109.46843 * 330.00090 * 20 18 16 24 24 C 1.38995 * 120.02757 * 220.16301 * 11 9 8 25 25 C 1.47155 * 118.03275 * 50.23065 * 8 7 5 26 26 C 1.53290 * 108.38407 * 309.71244 * 25 8 7 27 27 O 1.42960 * 109.51445 * 59.99397 * 5 2 1 28 28 H 1.09001 * 109.46645 * 299.99920 * 1 2 3 29 29 H 1.09003 * 109.47342 * 59.99408 * 1 2 3 30 30 H 1.09001 * 109.47313 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47174 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.46971 * 300.00145 * 3 2 1 33 33 H 1.09003 * 109.46775 * 60.00683 * 3 2 1 34 34 H 1.09001 * 109.46823 * 299.99800 * 4 2 1 35 35 H 1.08995 * 109.47053 * 59.99745 * 4 2 1 36 36 H 1.09003 * 109.46748 * 180.02562 * 4 2 1 37 37 H 1.09000 * 109.61522 * 68.10386 * 7 5 2 38 38 H 1.08998 * 109.52628 * 307.68590 * 7 5 2 39 39 H 1.08000 * 119.82047 * 0.26155 * 12 11 9 40 40 H 1.08006 * 119.79154 * 180.02562 * 13 12 11 41 41 H 1.08001 * 119.98302 * 179.97438 * 14 13 12 42 42 H 0.96996 * 120.00698 * 179.97438 * 19 18 16 43 43 H 1.07997 * 120.19928 * 359.74131 * 24 11 9 44 44 H 1.09001 * 109.68383 * 69.43694 * 25 8 7 45 45 H 1.08999 * 109.68182 * 189.95340 * 25 8 7 46 46 H 1.09002 * 109.51139 * 172.22652 * 26 25 8 47 47 H 1.08999 * 109.51604 * 292.37820 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 2.0400 -0.7214 1.2491 6 1 1.6786 -0.2070 2.1396 7 6 3.5688 -0.7255 1.2501 8 7 4.0353 -1.5831 2.3512 9 6 4.9538 -1.1417 3.2331 10 8 5.4679 -0.0509 3.0805 11 6 5.3362 -1.9844 4.3867 12 6 5.4880 -3.3659 4.2246 13 6 5.8399 -4.1614 5.3002 14 6 6.0453 -3.6033 6.5427 15 6 5.8972 -2.2155 6.7250 16 6 6.1069 -1.6394 7.9996 17 1 6.7761 -2.1129 8.7027 18 6 5.4473 -0.4560 8.3496 19 7 4.4319 -0.0380 7.6383 20 14 6.0165 0.5271 9.8325 21 1 7.0399 1.5159 9.4076 22 1 4.8579 1.2392 10.4288 23 1 6.6044 -0.3921 10.8397 24 6 5.5393 -1.4056 5.6339 25 6 3.4648 -2.9348 2.4643 26 6 1.9372 -2.8211 2.4073 27 8 1.5639 -2.0693 1.2499 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 3.1301 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6768 1.9562 0.8901 34 1 1.6765 -1.7489 -1.2493 35 1 1.6765 -0.2074 -2.1392 36 1 3.1299 -0.7216 -1.2491 37 1 3.9374 0.2901 1.3945 38 1 3.9327 -1.1171 0.3002 39 1 5.3294 -3.8135 3.2547 40 1 5.9551 -5.2268 5.1647 41 1 6.3195 -4.2310 7.3777 42 1 3.9744 0.7821 7.8811 43 1 5.4228 -0.3397 5.7636 44 1 3.8180 -3.5527 1.6387 45 1 3.7650 -3.3819 3.4120 46 1 1.4998 -3.8180 2.3505 47 1 1.5760 -2.3147 3.3024 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279177252.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:44 Heat of formation + Delta-G solvation = -61.631650 kcal Electronic energy + Delta-G solvation = -27518.720895 eV Core-core repulsion = 23859.128626 eV Total energy + Delta-G solvation = -3659.592269 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.37052 -38.66893 -37.02239 -36.39683 -34.44809 -33.70102 -30.98216 -29.82072 -29.55918 -27.89065 -27.39487 -26.80907 -25.54312 -24.08121 -22.98976 -21.24951 -20.95030 -19.01056 -18.87414 -17.63106 -16.43007 -16.21810 -15.77721 -15.47606 -15.37651 -14.98959 -14.66387 -14.46126 -14.07716 -13.87192 -13.64108 -13.37647 -13.31291 -12.80283 -12.72054 -12.55252 -12.27024 -12.08041 -11.96036 -11.80053 -11.63424 -11.38011 -11.21787 -11.15224 -11.08560 -10.84798 -10.70464 -10.60626 -10.55427 -10.29268 -10.11558 -9.94540 -9.70366 -9.28845 -9.01244 -8.22277 -7.65365 -7.53044 -6.84906 -4.48440 2.24601 2.74825 3.04478 3.07612 3.10259 3.26235 3.64059 3.72053 3.88120 4.52342 4.59726 4.69139 4.89418 5.00588 5.04866 5.23232 5.27390 5.39045 5.39602 5.48674 5.53010 5.58761 5.65460 5.68636 5.74757 5.84873 5.86413 5.89850 5.94379 6.00076 6.05144 6.07510 6.08256 6.23030 6.29523 6.32277 6.62904 6.79913 6.92129 6.97510 7.14713 7.21693 7.31947 7.59705 7.71352 7.80064 7.93072 8.10073 8.43931 8.74322 8.75816 8.79806 10.10594 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016861 B = 0.003671 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.237953 B = 7626.549887 C = 8461.266720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.057 4.057 3 C -0.147 4.147 4 C -0.140 4.140 5 C 0.089 3.911 6 H 0.061 0.939 7 C 0.082 3.918 8 N -0.616 5.616 9 C 0.572 3.428 10 O -0.548 6.548 11 C -0.121 4.121 12 C -0.227 4.227 13 C -0.096 4.096 14 C -0.210 4.210 15 C 0.104 3.896 16 C -0.460 4.460 17 H 0.082 0.918 18 C 0.074 3.926 19 N -0.794 5.794 20 Si 0.912 3.088 21 H -0.266 1.266 22 H -0.277 1.277 23 H -0.261 1.261 24 C -0.096 4.096 25 C 0.053 3.947 26 C 0.047 3.953 27 O -0.376 6.376 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.052 0.948 36 H 0.056 0.944 37 H 0.097 0.903 38 H 0.072 0.928 39 H 0.101 0.899 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.283 0.717 43 H 0.127 0.873 44 H 0.068 0.932 45 H 0.131 0.869 46 H 0.103 0.897 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.482 -1.753 -12.070 14.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.058 4.058 3 C -0.204 4.204 4 C -0.197 4.197 5 C 0.031 3.969 6 H 0.079 0.921 7 C -0.041 4.041 8 N -0.351 5.351 9 C 0.364 3.636 10 O -0.426 6.426 11 C -0.124 4.124 12 C -0.247 4.247 13 C -0.115 4.115 14 C -0.230 4.230 15 C 0.101 3.899 16 C -0.489 4.489 17 H 0.100 0.900 18 C -0.144 4.144 19 N -0.419 5.419 20 Si 0.736 3.264 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.185 1.185 24 C -0.116 4.116 25 C -0.069 4.069 26 C -0.031 4.031 27 O -0.295 6.295 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.116 0.884 38 H 0.090 0.910 39 H 0.119 0.881 40 H 0.113 0.887 41 H 0.115 0.885 42 H 0.094 0.906 43 H 0.145 0.855 44 H 0.087 0.913 45 H 0.148 0.852 46 H 0.121 0.879 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.490 -1.042 -12.296 14.435 hybrid contribution 0.261 0.480 0.889 1.043 sum -7.230 -0.562 -11.407 13.517 Atomic orbital electron populations 1.21790 0.93830 1.02420 1.01305 1.20505 0.96405 0.94866 0.94028 1.21945 1.01654 0.94594 1.02196 1.21883 1.00990 1.00872 0.95983 1.22374 0.92777 0.83666 0.98111 0.92075 1.22249 0.94270 0.97367 0.90178 1.48007 1.42583 1.15304 1.29179 1.18966 0.77468 0.85724 0.81413 1.90679 1.54010 1.22580 1.75309 1.19405 1.06494 0.93336 0.93168 1.20535 1.13631 0.92391 0.98098 1.20466 1.00175 0.97401 0.93415 1.21140 1.10904 0.94781 0.96151 1.17578 0.88842 0.90592 0.92845 1.19604 1.23595 1.06247 0.99458 0.90022 1.25934 0.93222 0.96992 0.98263 1.69764 1.14495 1.20505 1.37093 0.86243 0.79256 0.79968 0.80903 1.19130 1.20221 1.18537 1.21470 1.00502 1.00223 0.89402 1.23107 0.93703 0.84382 1.05725 1.23032 0.94534 0.96810 0.88681 1.87870 1.75824 1.23371 1.42426 0.92883 0.92782 0.91754 0.91981 0.91997 0.92298 0.91720 0.92846 0.92486 0.88431 0.91021 0.88064 0.88709 0.88512 0.90595 0.85547 0.91344 0.85186 0.87905 0.92524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.33 37.16 0.31 -1.05 16 2 C -0.06 -0.63 0.63 -154.51 -0.10 -0.72 16 3 C -0.15 -1.50 8.13 37.16 0.30 -1.20 16 4 C -0.14 -1.41 7.99 37.16 0.30 -1.11 16 5 C 0.09 1.21 2.02 -26.80 -0.05 1.16 16 6 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 7 C 0.08 1.26 5.12 -3.75 -0.02 1.24 16 8 N -0.62 -11.05 3.03 -173.63 -0.53 -11.57 16 9 C 0.57 12.78 7.37 -12.31 -0.09 12.69 16 10 O -0.55 -13.77 16.41 5.32 0.09 -13.68 16 11 C -0.12 -2.83 5.35 -105.04 -0.56 -3.39 16 12 C -0.23 -4.66 7.35 -38.92 -0.29 -4.95 16 13 C -0.10 -1.98 10.01 -39.73 -0.40 -2.38 16 14 C -0.21 -4.85 9.78 -38.81 -0.38 -5.23 16 15 C 0.10 2.69 5.55 -106.87 -0.59 2.10 16 16 C -0.46 -11.89 9.05 -37.73 -0.34 -12.23 16 17 H 0.08 2.01 7.89 -52.49 -0.41 1.60 16 18 C 0.07 1.84 5.18 -17.34 -0.09 1.75 16 19 N -0.79 -20.49 10.98 55.55 0.61 -19.88 16 20 Si 0.91 18.59 29.58 -169.99 -5.03 13.56 16 21 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 22 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 23 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 24 C -0.10 -2.51 8.25 -38.44 -0.32 -2.83 16 25 C 0.05 0.80 5.16 -3.53 -0.02 0.78 16 26 C 0.05 0.62 6.98 37.31 0.26 0.88 16 27 O -0.38 -5.12 9.04 -35.23 -0.32 -5.44 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.68 7.68 -51.93 -0.40 0.28 16 31 H 0.06 0.67 6.63 -51.93 -0.34 0.32 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.69 7.68 -51.93 -0.40 0.29 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.58 6.27 -51.93 -0.33 0.26 16 37 H 0.10 1.62 5.88 -51.93 -0.31 1.32 16 38 H 0.07 1.01 6.06 -51.93 -0.31 0.70 16 39 H 0.10 1.79 5.99 -52.49 -0.31 1.48 16 40 H 0.09 1.64 8.06 -52.48 -0.42 1.22 16 41 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 42 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 43 H 0.13 3.59 6.27 -52.49 -0.33 3.27 16 44 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 45 H 0.13 2.12 4.11 -51.93 -0.21 1.91 16 46 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 47 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 364.77 15.07 5.50 5.50 Total: -1.00 -28.84 364.77 -8.90 -37.74 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -7.14 Total: 8.26 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: -2.08 Total: -14.49 kcal Atomic # 7 Polarization: -31.54 SS G_CDS: 0.08 Total: -31.45 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.23 Total: -19.12 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -28.84 -8.90 -37.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279177252.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.889 kcal (2) G-P(sol) polarization free energy of solvation -28.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds