Wall clock time and date at job start Tue Mar 31 2020 11:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47249 * 2 1 4 4 C 1.53007 * 109.46712 * 240.00356 * 2 1 3 5 5 C 1.52993 * 109.47266 * 120.00665 * 2 1 3 6 6 H 1.09002 * 109.51091 * 299.89205 * 5 2 1 7 7 C 1.52882 * 109.58373 * 179.87835 * 5 2 1 8 8 N 1.47152 * 108.60754 * 187.91695 * 7 5 2 9 9 C 1.34771 * 120.98639 * 230.49913 * 8 7 5 10 10 O 1.21552 * 120.00018 * 355.64105 * 9 8 7 11 11 C 1.47884 * 120.00463 * 175.63714 * 9 8 7 12 12 C 1.39921 * 120.02207 * 39.88358 * 11 9 8 13 13 C 1.38330 * 120.35611 * 180.27782 * 12 11 9 14 14 C 1.37748 * 120.41344 * 359.97438 * 13 12 11 15 15 C 1.40751 * 120.04228 * 0.02562 * 14 13 12 16 16 C 1.41440 * 120.17953 * 179.97438 * 15 14 13 17 17 H 1.07995 * 119.99971 * 27.42393 * 16 15 14 18 18 C 1.39931 * 119.99789 * 207.42474 * 16 15 14 19 19 N 1.30830 * 120.00581 * 14.85745 * 18 16 15 20 20 Si 1.86805 * 119.99926 * 194.85878 * 18 16 15 21 21 H 1.48507 * 109.46880 * 90.00003 * 20 18 16 22 22 H 1.48493 * 109.47156 * 209.99993 * 20 18 16 23 23 H 1.48492 * 109.46843 * 330.00090 * 20 18 16 24 24 C 1.38995 * 120.02757 * 220.16301 * 11 9 8 25 25 C 1.47155 * 118.03275 * 50.23065 * 8 7 5 26 26 C 1.53290 * 108.38407 * 309.71244 * 25 8 7 27 27 O 1.42960 * 109.51445 * 59.99397 * 5 2 1 28 28 H 1.09001 * 109.46645 * 299.99920 * 1 2 3 29 29 H 1.09003 * 109.47342 * 59.99408 * 1 2 3 30 30 H 1.09001 * 109.47313 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47174 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.46971 * 300.00145 * 3 2 1 33 33 H 1.09003 * 109.46775 * 60.00683 * 3 2 1 34 34 H 1.09001 * 109.46823 * 299.99800 * 4 2 1 35 35 H 1.08995 * 109.47053 * 59.99745 * 4 2 1 36 36 H 1.09003 * 109.46748 * 180.02562 * 4 2 1 37 37 H 1.09000 * 109.61522 * 68.10386 * 7 5 2 38 38 H 1.08998 * 109.52628 * 307.68590 * 7 5 2 39 39 H 1.08000 * 119.82047 * 0.26155 * 12 11 9 40 40 H 1.08006 * 119.79154 * 180.02562 * 13 12 11 41 41 H 1.08001 * 119.98302 * 179.97438 * 14 13 12 42 42 H 0.96996 * 120.00698 * 179.97438 * 19 18 16 43 43 H 1.07997 * 120.19928 * 359.74131 * 24 11 9 44 44 H 1.09001 * 109.68383 * 69.43694 * 25 8 7 45 45 H 1.08999 * 109.68182 * 189.95340 * 25 8 7 46 46 H 1.09002 * 109.51139 * 172.22652 * 26 25 8 47 47 H 1.08999 * 109.51604 * 292.37820 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 2.0400 -0.7214 1.2491 6 1 1.6786 -0.2070 2.1396 7 6 3.5688 -0.7255 1.2501 8 7 4.0353 -1.5831 2.3512 9 6 4.9538 -1.1417 3.2331 10 8 5.4679 -0.0509 3.0805 11 6 5.3362 -1.9844 4.3867 12 6 5.4880 -3.3659 4.2246 13 6 5.8399 -4.1614 5.3002 14 6 6.0453 -3.6033 6.5427 15 6 5.8972 -2.2155 6.7250 16 6 6.1069 -1.6394 7.9996 17 1 6.7761 -2.1129 8.7027 18 6 5.4473 -0.4560 8.3496 19 7 4.4319 -0.0380 7.6383 20 14 6.0165 0.5271 9.8325 21 1 7.0399 1.5159 9.4076 22 1 4.8579 1.2392 10.4288 23 1 6.6044 -0.3921 10.8397 24 6 5.5393 -1.4056 5.6339 25 6 3.4648 -2.9348 2.4643 26 6 1.9372 -2.8211 2.4073 27 8 1.5639 -2.0693 1.2499 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 3.1301 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6768 1.9562 0.8901 34 1 1.6765 -1.7489 -1.2493 35 1 1.6765 -0.2074 -2.1392 36 1 3.1299 -0.7216 -1.2491 37 1 3.9374 0.2901 1.3945 38 1 3.9327 -1.1171 0.3002 39 1 5.3294 -3.8135 3.2547 40 1 5.9551 -5.2268 5.1647 41 1 6.3195 -4.2310 7.3777 42 1 3.9744 0.7821 7.8811 43 1 5.4228 -0.3397 5.7636 44 1 3.8180 -3.5527 1.6387 45 1 3.7650 -3.3819 3.4120 46 1 1.4998 -3.8180 2.3505 47 1 1.5760 -2.3147 3.3024 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279177252.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:43 Heat of formation + Delta-G solvation = -77.296036 kcal Electronic energy + Delta-G solvation = -27519.400154 eV Core-core repulsion = 23859.128626 eV Total energy + Delta-G solvation = -3660.271528 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.75290 -40.11863 -38.79271 -37.45638 -35.95403 -35.44678 -32.50026 -31.36940 -31.25676 -29.06478 -28.19896 -27.83326 -27.35917 -25.34939 -24.47670 -22.92095 -22.53692 -20.51742 -19.95224 -19.32568 -17.84897 -17.76935 -17.21204 -16.93671 -16.64368 -16.62017 -16.03336 -15.89902 -15.52027 -15.03619 -14.78571 -14.71487 -14.56644 -14.35165 -14.26429 -14.07269 -13.61790 -13.25205 -13.10317 -13.01043 -12.86989 -12.81319 -12.71745 -12.50593 -12.26196 -12.20676 -12.09944 -11.92838 -11.72776 -11.62204 -11.53880 -11.39394 -11.15876 -11.12138 -10.70618 -9.69757 -9.40279 -9.36508 -8.68587 -6.42115 0.43722 0.96323 1.34944 1.45185 1.48688 1.72550 1.97917 2.17162 2.63258 2.71663 3.51996 3.60305 3.65584 3.76507 3.88838 3.94562 4.07055 4.13454 4.27666 4.36490 4.43492 4.48157 4.51516 4.54488 4.70722 4.73046 4.78685 4.82248 4.87314 4.89418 4.94577 5.04074 5.05436 5.07333 5.15168 5.16032 5.24149 5.27475 5.40645 5.47436 5.48859 5.50838 5.80035 5.90853 6.00290 6.09402 6.20942 6.28760 6.56812 6.85775 6.90555 7.08169 8.28828 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016861 B = 0.003671 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.237953 B = 7626.549887 C = 8461.266720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.055 4.055 3 C -0.146 4.146 4 C -0.136 4.136 5 C 0.095 3.905 6 H 0.038 0.962 7 C 0.081 3.919 8 N -0.609 5.609 9 C 0.564 3.436 10 O -0.591 6.591 11 C -0.131 4.131 12 C -0.203 4.203 13 C -0.090 4.090 14 C -0.214 4.214 15 C 0.073 3.927 16 C -0.497 4.497 17 H 0.084 0.916 18 C 0.031 3.969 19 N -0.832 5.832 20 Si 0.982 3.018 21 H -0.268 1.268 22 H -0.269 1.269 23 H -0.250 1.250 24 C -0.131 4.131 25 C 0.048 3.952 26 C 0.049 3.951 27 O -0.371 6.371 28 H 0.045 0.955 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.083 0.917 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.140 0.860 40 H 0.143 0.857 41 H 0.111 0.889 42 H 0.285 0.715 43 H 0.089 0.911 44 H 0.099 0.901 45 H 0.119 0.881 46 H 0.140 0.860 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.275 -3.918 -13.932 16.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.056 4.056 3 C -0.204 4.204 4 C -0.193 4.193 5 C 0.036 3.964 6 H 0.056 0.944 7 C -0.041 4.041 8 N -0.342 5.342 9 C 0.355 3.645 10 O -0.472 6.472 11 C -0.134 4.134 12 C -0.223 4.223 13 C -0.108 4.108 14 C -0.234 4.234 15 C 0.071 3.929 16 C -0.527 4.527 17 H 0.102 0.898 18 C -0.183 4.183 19 N -0.459 5.459 20 Si 0.802 3.198 21 H -0.193 1.193 22 H -0.193 1.193 23 H -0.173 1.173 24 C -0.152 4.152 25 C -0.073 4.073 26 C -0.029 4.029 27 O -0.289 6.289 28 H 0.065 0.935 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.102 0.898 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.097 0.903 38 H 0.110 0.890 39 H 0.158 0.842 40 H 0.160 0.840 41 H 0.129 0.871 42 H 0.096 0.904 43 H 0.107 0.893 44 H 0.117 0.883 45 H 0.137 0.863 46 H 0.158 0.842 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -8.317 -3.256 -14.185 16.763 hybrid contribution 0.465 1.011 1.296 1.708 sum -7.852 -2.245 -12.889 15.258 Atomic orbital electron populations 1.21761 0.92844 1.02363 1.01997 1.20545 0.97139 0.94802 0.93088 1.21956 1.01077 0.94479 1.02850 1.21850 1.00703 1.00741 0.95997 1.22359 0.91274 0.83963 0.98830 0.94360 1.22435 0.95600 0.96190 0.89898 1.48083 1.40934 1.16741 1.28402 1.18956 0.78349 0.85183 0.81978 1.90644 1.56025 1.24154 1.76418 1.19651 1.06145 0.94992 0.92590 1.20982 1.10463 0.90909 0.99915 1.20941 0.98152 0.99731 0.92009 1.21444 1.10154 0.93781 0.97995 1.17903 0.89907 0.92140 0.92943 1.19875 1.24901 1.07876 1.00039 0.89785 1.26794 0.92825 0.97611 1.01089 1.69860 1.15845 1.21117 1.39032 0.85200 0.78769 0.78332 0.77451 1.19330 1.19326 1.17333 1.21237 1.03912 0.98776 0.91256 1.23328 0.94879 0.82869 1.06220 1.23125 0.93350 0.98399 0.87980 1.87893 1.75594 1.23093 1.42342 0.93539 0.90800 0.92138 0.92912 0.89785 0.93226 0.91987 0.90932 0.92855 0.90316 0.88975 0.84208 0.83978 0.87128 0.90434 0.89261 0.88258 0.86313 0.84192 0.94407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 8.33 71.98 0.60 -1.79 16 2 C -0.06 -1.11 0.63 -52.18 -0.03 -1.15 16 3 C -0.15 -2.86 8.13 71.98 0.59 -2.27 16 4 C -0.14 -2.36 7.99 71.98 0.58 -1.78 16 5 C 0.09 2.49 2.02 30.55 0.06 2.56 16 6 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 7 C 0.08 2.45 5.12 86.22 0.44 2.90 16 8 N -0.61 -21.53 3.03 -821.51 -2.49 -24.02 16 9 C 0.56 25.87 7.37 86.80 0.64 26.51 16 10 O -0.59 -31.33 16.41 -3.88 -0.06 -31.39 16 11 C -0.13 -6.22 5.35 -20.13 -0.11 -6.33 16 12 C -0.20 -7.91 7.35 22.70 0.17 -7.75 16 13 C -0.09 -3.46 10.01 22.18 0.22 -3.24 16 14 C -0.21 -9.76 9.78 22.77 0.22 -9.54 16 15 C 0.07 3.94 5.55 -21.32 -0.12 3.82 16 16 C -0.50 -26.88 9.05 23.47 0.21 -26.67 16 17 H 0.08 4.29 7.89 -2.91 -0.02 4.27 16 18 C 0.03 1.60 5.18 85.25 0.44 2.04 16 19 N -0.83 -45.74 10.98 21.82 0.24 -45.50 16 20 Si 0.98 39.53 29.58 68.60 2.03 41.56 16 21 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 22 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 23 H -0.25 -9.49 7.11 99.48 0.71 -8.78 16 24 C -0.13 -7.27 8.25 23.01 0.19 -7.08 16 25 C 0.05 1.32 5.16 86.35 0.45 1.77 16 26 C 0.05 1.18 6.98 72.08 0.50 1.68 16 27 O -0.37 -9.27 9.04 -148.98 -1.35 -10.61 16 28 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.06 1.14 7.68 -2.39 -0.02 1.12 16 31 H 0.05 1.12 6.63 -2.39 -0.02 1.11 16 32 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.06 1.13 7.68 -2.39 -0.02 1.11 16 35 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.05 0.96 6.27 -2.39 -0.01 0.94 16 37 H 0.08 2.72 5.88 -2.39 -0.01 2.71 16 38 H 0.09 2.45 6.06 -2.39 -0.01 2.43 16 39 H 0.14 4.35 5.99 -2.91 -0.02 4.33 16 40 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 41 H 0.11 4.63 8.06 -2.91 -0.02 4.61 16 42 H 0.29 14.43 8.30 -92.71 -0.77 13.66 16 43 H 0.09 5.53 6.27 -2.91 -0.02 5.52 16 44 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.12 3.55 4.11 -2.39 -0.01 3.54 16 46 H 0.14 2.40 8.14 -2.39 -0.02 2.38 16 47 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -67.71 364.77 4.39 -63.33 By element: Atomic # 1 Polarization: 31.99 SS G_CDS: 0.97 Total: 32.96 kcal Atomic # 6 Polarization: -31.36 SS G_CDS: 5.05 Total: -26.32 kcal Atomic # 7 Polarization: -67.28 SS G_CDS: -2.25 Total: -69.52 kcal Atomic # 8 Polarization: -40.60 SS G_CDS: -1.41 Total: -42.01 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 2.03 Total: 41.56 kcal Total: -67.71 4.39 -63.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279177252.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.969 kcal (2) G-P(sol) polarization free energy of solvation -67.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds