Wall clock time and date at job start Tue Mar 31 2020 11:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52996 * 109.47286 * 2 1 4 4 C 1.52998 * 109.47046 * 239.99786 * 2 1 3 5 5 C 1.53000 * 109.47107 * 120.00122 * 2 1 3 6 6 H 1.09003 * 109.50990 * 299.89370 * 5 2 1 7 7 C 1.53295 * 109.51646 * 59.99766 * 5 2 1 8 8 N 1.47150 * 108.38376 * 172.27423 * 7 5 2 9 9 C 1.34779 * 120.97509 * 129.44747 * 8 7 5 10 10 O 1.21550 * 120.00664 * 354.64650 * 9 8 7 11 11 C 1.47890 * 119.99863 * 174.65252 * 9 8 7 12 12 C 1.39917 * 120.02638 * 147.26461 * 11 9 8 13 13 C 1.38328 * 120.35587 * 180.02562 * 12 11 9 14 14 C 1.37754 * 120.41667 * 359.97438 * 13 12 11 15 15 C 1.40751 * 120.03385 * 359.97438 * 14 13 12 16 16 C 1.41441 * 120.17537 * 179.97438 * 15 14 13 17 17 H 1.07993 * 120.00035 * 156.50662 * 16 15 14 18 18 C 1.39941 * 120.00111 * 336.51167 * 16 15 14 19 19 N 1.30823 * 119.99991 * 343.51208 * 18 16 15 20 20 Si 1.86795 * 120.00010 * 163.50561 * 18 16 15 21 21 H 1.48501 * 109.47211 * 60.00456 * 20 18 16 22 22 H 1.48511 * 109.47168 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47494 * 299.99925 * 20 18 16 24 24 C 1.38996 * 120.02123 * 326.98715 * 11 9 8 25 25 C 1.47151 * 118.04204 * 309.46573 * 8 7 5 26 26 C 1.53297 * 108.37940 * 50.53432 * 25 8 7 27 27 O 1.42963 * 109.22676 * 307.69661 * 26 25 8 28 28 H 1.09003 * 109.47398 * 300.00014 * 1 2 3 29 29 H 1.09005 * 109.47413 * 59.99918 * 1 2 3 30 30 H 1.08997 * 109.47301 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47584 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47122 * 299.99875 * 3 2 1 33 33 H 1.09001 * 109.47578 * 60.00018 * 3 2 1 34 34 H 1.08997 * 109.47594 * 299.99815 * 4 2 1 35 35 H 1.09001 * 109.47087 * 60.00293 * 4 2 1 36 36 H 1.09005 * 109.47525 * 180.02562 * 4 2 1 37 37 H 1.09005 * 109.67799 * 52.55392 * 7 5 2 38 38 H 1.08991 * 109.68198 * 292.00519 * 7 5 2 39 39 H 1.07999 * 119.82269 * 359.97438 * 12 11 9 40 40 H 1.08005 * 119.79403 * 180.02562 * 13 12 11 41 41 H 1.07996 * 119.98541 * 179.97438 * 14 13 12 42 42 H 0.97002 * 120.00352 * 180.02562 * 19 18 16 43 43 H 1.08001 * 120.20512 * 0.02562 * 24 11 9 44 44 H 1.08995 * 109.68066 * 170.25786 * 25 8 7 45 45 H 1.08995 * 109.67891 * 290.81509 * 25 8 7 46 46 H 1.08998 * 109.51344 * 67.62452 * 26 25 8 47 47 H 1.09007 * 109.50932 * 187.77273 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0399 -0.7213 1.2492 6 1 1.6785 -0.2068 2.1397 7 6 1.5295 -2.1667 1.2503 8 7 2.1809 -2.8881 2.3551 9 6 1.4569 -3.6028 3.2392 10 8 0.2426 -3.5799 3.1900 11 6 2.1399 -4.4147 4.2694 12 6 1.5526 -4.5878 5.5275 13 6 2.1857 -5.3454 6.4963 14 6 3.4010 -5.9385 6.2341 15 6 4.0067 -5.7765 4.9739 16 6 5.2547 -6.3837 4.7016 17 1 5.5427 -6.5922 3.6818 18 6 6.1163 -6.7145 5.7535 19 7 5.9351 -6.1885 6.9375 20 14 7.5251 -7.9072 5.4671 21 1 8.4284 -7.3643 4.4208 22 1 8.2838 -8.0898 6.7306 23 1 6.9829 -9.2162 5.0224 24 6 3.3631 -5.0112 3.9866 25 6 3.6459 -2.8060 2.4663 26 6 4.0531 -1.3294 2.4060 27 8 3.4696 -0.7269 1.2483 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6766 -1.7489 -1.2492 35 1 1.6766 -0.2074 -2.1392 36 1 3.1299 -0.7217 -1.2490 37 1 1.7782 -2.6445 0.3026 38 1 0.4490 -2.1744 1.3933 39 1 0.6002 -4.1267 5.7436 40 1 1.7240 -5.4733 7.4643 41 1 3.8894 -6.5282 6.9957 42 1 6.5325 -6.4175 7.6667 43 1 3.8182 -4.8837 3.0155 44 1 3.9667 -3.2370 3.4146 45 1 4.1076 -3.3482 1.6412 46 1 3.6990 -0.8172 3.3006 47 1 5.1390 -1.2533 2.3479 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279177254.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:48 Heat of formation + Delta-G solvation = -62.931498 kcal Electronic energy + Delta-G solvation = -27384.878076 eV Core-core repulsion = 23725.229441 eV Total energy + Delta-G solvation = -3659.648635 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.39976 -38.70650 -37.06429 -36.41903 -34.43845 -33.76144 -30.93051 -29.99074 -29.54800 -27.87345 -27.41217 -26.81918 -25.43657 -24.15751 -23.05390 -21.23339 -20.86910 -19.17956 -18.98333 -17.44364 -16.46669 -16.27094 -15.70557 -15.53391 -15.41414 -15.02736 -14.69411 -14.47055 -14.09847 -13.89843 -13.65695 -13.39797 -13.31966 -12.90589 -12.82192 -12.39768 -12.29890 -12.15319 -11.85411 -11.78641 -11.75258 -11.42938 -11.25315 -11.13097 -10.98030 -10.87192 -10.81368 -10.68505 -10.56270 -10.31711 -10.29874 -9.94972 -9.59666 -9.30079 -9.09145 -8.25228 -7.64879 -7.57837 -6.88109 -4.51648 2.19663 2.67211 2.99953 3.01578 3.09889 3.24121 3.64043 3.70533 3.83789 4.50936 4.56107 4.66403 4.86594 4.97410 5.03627 5.20963 5.27626 5.35017 5.38473 5.48116 5.49978 5.57092 5.64878 5.66464 5.71425 5.82341 5.84538 5.89120 5.96257 5.97457 6.05096 6.11032 6.13620 6.26832 6.30656 6.35282 6.67837 6.74351 6.85496 6.97265 7.10934 7.20916 7.28599 7.56593 7.74205 7.83241 7.90496 8.03831 8.43961 8.68513 8.72381 8.76422 10.05295 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018872 B = 0.003443 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.292304 B = 8131.395908 C = 9043.088144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.058 4.058 3 C -0.136 4.136 4 C -0.141 4.141 5 C 0.090 3.910 6 H 0.060 0.940 7 C 0.081 3.919 8 N -0.615 5.615 9 C 0.570 3.430 10 O -0.555 6.555 11 C -0.114 4.114 12 C -0.179 4.179 13 C -0.113 4.113 14 C -0.140 4.140 15 C 0.101 3.899 16 C -0.461 4.461 17 H 0.079 0.921 18 C 0.076 3.924 19 N -0.794 5.794 20 Si 0.910 3.090 21 H -0.265 1.265 22 H -0.278 1.278 23 H -0.263 1.263 24 C -0.202 4.202 25 C 0.058 3.942 26 C 0.048 3.952 27 O -0.375 6.375 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.126 0.874 42 H 0.283 0.717 43 H 0.107 0.893 44 H 0.130 0.870 45 H 0.073 0.927 46 H 0.053 0.947 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.190 9.958 -9.679 14.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.058 4.058 3 C -0.193 4.193 4 C -0.198 4.198 5 C 0.031 3.969 6 H 0.078 0.922 7 C -0.042 4.042 8 N -0.349 5.349 9 C 0.362 3.638 10 O -0.434 6.434 11 C -0.116 4.116 12 C -0.200 4.200 13 C -0.132 4.132 14 C -0.159 4.159 15 C 0.099 3.901 16 C -0.490 4.490 17 H 0.097 0.903 18 C -0.142 4.142 19 N -0.419 5.419 20 Si 0.734 3.266 21 H -0.189 1.189 22 H -0.203 1.203 23 H -0.188 1.188 24 C -0.222 4.222 25 C -0.065 4.065 26 C -0.030 4.030 27 O -0.294 6.294 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.144 0.856 42 H 0.094 0.906 43 H 0.125 0.875 44 H 0.147 0.853 45 H 0.091 0.909 46 H 0.072 0.928 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.615 10.052 -9.611 14.151 hybrid contribution 0.626 -0.657 0.240 0.938 sum -1.989 9.395 -9.372 13.418 Atomic orbital electron populations 1.21937 0.93733 1.02502 1.02130 1.20508 0.95355 0.95872 0.94113 1.21791 1.01940 0.94367 1.01249 1.21885 1.02046 0.99933 0.95927 1.22441 0.81798 0.94666 0.97976 0.92221 1.22358 0.99741 0.91985 0.90102 1.48012 1.07429 1.50603 1.28899 1.18996 0.86481 0.78022 0.80283 1.90656 1.14048 1.65393 1.73311 1.19251 0.96502 1.01810 0.94087 1.20392 1.00123 1.06192 0.93269 1.20690 0.96174 0.98952 0.97372 1.21642 0.93953 1.01441 0.98875 1.17538 0.92331 0.89125 0.91142 1.19535 1.00298 1.34915 0.94301 0.90288 1.25903 0.98970 0.94809 0.94504 1.69774 1.35434 1.34398 1.02300 0.86334 0.80291 0.81276 0.78687 1.18907 1.20289 1.18793 1.21376 0.96060 1.04165 1.00562 1.23087 0.80143 0.97212 1.06054 1.23059 0.98969 0.92562 0.88377 1.87887 1.18862 1.80253 1.42422 0.92398 0.91997 0.92000 0.91709 0.92768 0.92964 0.92466 0.92840 0.91628 0.90846 0.88393 0.88472 0.88606 0.85617 0.90622 0.87467 0.85270 0.90887 0.92820 0.87608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 8.13 37.15 0.30 -1.08 16 2 C -0.06 -0.60 0.63 -154.52 -0.10 -0.70 16 3 C -0.14 -1.30 8.33 37.16 0.31 -0.99 16 4 C -0.14 -1.40 7.99 37.16 0.30 -1.10 16 5 C 0.09 1.16 2.03 -26.58 -0.05 1.11 16 6 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 7 C 0.08 1.20 5.16 -3.53 -0.02 1.18 16 8 N -0.62 -10.77 3.02 -173.38 -0.52 -11.29 16 9 C 0.57 12.06 7.42 -12.31 -0.09 11.97 16 10 O -0.56 -12.92 16.23 5.32 0.09 -12.84 16 11 C -0.11 -2.56 5.36 -105.04 -0.56 -3.12 16 12 C -0.18 -4.10 9.61 -38.92 -0.37 -4.47 16 13 C -0.11 -2.58 10.01 -39.73 -0.40 -2.97 16 14 C -0.14 -3.42 8.70 -38.81 -0.34 -3.76 16 15 C 0.10 2.50 5.59 -106.87 -0.60 1.90 16 16 C -0.46 -11.29 9.06 -37.73 -0.34 -11.63 16 17 H 0.08 1.85 7.90 -52.49 -0.41 1.43 16 18 C 0.08 1.78 5.18 -17.34 -0.09 1.69 16 19 N -0.79 -19.13 10.80 55.55 0.60 -18.53 16 20 Si 0.91 17.56 29.59 -169.99 -5.03 12.53 16 21 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 22 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 23 H -0.26 -5.11 7.11 56.52 0.40 -4.70 16 24 C -0.20 -4.56 7.13 -38.44 -0.27 -4.83 16 25 C 0.06 0.90 4.90 -3.53 -0.02 0.89 16 26 C 0.05 0.64 6.98 37.31 0.26 0.90 16 27 O -0.38 -5.08 9.05 -35.23 -0.32 -5.39 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.62 6.62 -51.93 -0.34 0.27 16 31 H 0.06 0.67 7.69 -51.92 -0.40 0.27 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.58 6.28 -51.93 -0.33 0.25 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.71 7.68 -51.93 -0.40 0.31 16 37 H 0.07 1.02 6.09 -51.93 -0.32 0.71 16 38 H 0.10 1.53 5.82 -51.93 -0.30 1.23 16 39 H 0.10 2.14 7.96 -52.49 -0.42 1.72 16 40 H 0.10 1.93 8.06 -52.48 -0.42 1.51 16 41 H 0.13 3.17 6.01 -52.49 -0.32 2.85 16 42 H 0.28 6.24 8.30 -40.82 -0.34 5.90 16 43 H 0.11 2.23 5.72 -52.49 -0.30 1.93 16 44 H 0.13 2.30 4.56 -51.93 -0.24 2.07 16 45 H 0.07 1.08 7.95 -51.93 -0.41 0.67 16 46 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.11 1.21 8.14 -51.92 -0.42 0.78 16 LS Contribution 364.01 15.07 5.49 5.49 Total: -1.00 -27.41 364.01 -8.91 -36.32 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -7.12 Total: 8.74 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: -2.08 Total: -15.02 kcal Atomic # 7 Polarization: -29.90 SS G_CDS: 0.08 Total: -29.82 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -0.23 Total: -18.23 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -5.03 Total: 12.53 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -27.41 -8.91 -36.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279177254.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.616 kcal (2) G-P(sol) polarization free energy of solvation -27.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds