Wall clock time and date at job start Tue Mar 31 2020 11:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52996 * 109.47286 * 2 1 4 4 C 1.52998 * 109.47046 * 239.99786 * 2 1 3 5 5 C 1.53000 * 109.47107 * 120.00122 * 2 1 3 6 6 H 1.09003 * 109.50990 * 299.89370 * 5 2 1 7 7 C 1.53295 * 109.51646 * 59.99766 * 5 2 1 8 8 N 1.47150 * 108.38376 * 172.27423 * 7 5 2 9 9 C 1.34779 * 120.97509 * 129.44747 * 8 7 5 10 10 O 1.21550 * 120.00664 * 354.64650 * 9 8 7 11 11 C 1.47890 * 119.99863 * 174.65252 * 9 8 7 12 12 C 1.39917 * 120.02638 * 147.26461 * 11 9 8 13 13 C 1.38328 * 120.35587 * 180.02562 * 12 11 9 14 14 C 1.37754 * 120.41667 * 359.97438 * 13 12 11 15 15 C 1.40751 * 120.03385 * 359.97438 * 14 13 12 16 16 C 1.41441 * 120.17537 * 179.97438 * 15 14 13 17 17 H 1.07993 * 120.00035 * 156.50662 * 16 15 14 18 18 C 1.39941 * 120.00111 * 336.51167 * 16 15 14 19 19 N 1.30823 * 119.99991 * 343.51208 * 18 16 15 20 20 Si 1.86795 * 120.00010 * 163.50561 * 18 16 15 21 21 H 1.48501 * 109.47211 * 60.00456 * 20 18 16 22 22 H 1.48511 * 109.47168 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47494 * 299.99925 * 20 18 16 24 24 C 1.38996 * 120.02123 * 326.98715 * 11 9 8 25 25 C 1.47151 * 118.04204 * 309.46573 * 8 7 5 26 26 C 1.53297 * 108.37940 * 50.53432 * 25 8 7 27 27 O 1.42963 * 109.22676 * 307.69661 * 26 25 8 28 28 H 1.09003 * 109.47398 * 300.00014 * 1 2 3 29 29 H 1.09005 * 109.47413 * 59.99918 * 1 2 3 30 30 H 1.08997 * 109.47301 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47584 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47122 * 299.99875 * 3 2 1 33 33 H 1.09001 * 109.47578 * 60.00018 * 3 2 1 34 34 H 1.08997 * 109.47594 * 299.99815 * 4 2 1 35 35 H 1.09001 * 109.47087 * 60.00293 * 4 2 1 36 36 H 1.09005 * 109.47525 * 180.02562 * 4 2 1 37 37 H 1.09005 * 109.67799 * 52.55392 * 7 5 2 38 38 H 1.08991 * 109.68198 * 292.00519 * 7 5 2 39 39 H 1.07999 * 119.82269 * 359.97438 * 12 11 9 40 40 H 1.08005 * 119.79403 * 180.02562 * 13 12 11 41 41 H 1.07996 * 119.98541 * 179.97438 * 14 13 12 42 42 H 0.97002 * 120.00352 * 180.02562 * 19 18 16 43 43 H 1.08001 * 120.20512 * 0.02562 * 24 11 9 44 44 H 1.08995 * 109.68066 * 170.25786 * 25 8 7 45 45 H 1.08995 * 109.67891 * 290.81509 * 25 8 7 46 46 H 1.08998 * 109.51344 * 67.62452 * 26 25 8 47 47 H 1.09007 * 109.50932 * 187.77273 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0399 -0.7213 1.2492 6 1 1.6785 -0.2068 2.1397 7 6 1.5295 -2.1667 1.2503 8 7 2.1809 -2.8881 2.3551 9 6 1.4569 -3.6028 3.2392 10 8 0.2426 -3.5799 3.1900 11 6 2.1399 -4.4147 4.2694 12 6 1.5526 -4.5878 5.5275 13 6 2.1857 -5.3454 6.4963 14 6 3.4010 -5.9385 6.2341 15 6 4.0067 -5.7765 4.9739 16 6 5.2547 -6.3837 4.7016 17 1 5.5427 -6.5922 3.6818 18 6 6.1163 -6.7145 5.7535 19 7 5.9351 -6.1885 6.9375 20 14 7.5251 -7.9072 5.4671 21 1 8.4284 -7.3643 4.4208 22 1 8.2838 -8.0898 6.7306 23 1 6.9829 -9.2162 5.0224 24 6 3.3631 -5.0112 3.9866 25 6 3.6459 -2.8060 2.4663 26 6 4.0531 -1.3294 2.4060 27 8 3.4696 -0.7269 1.2483 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6766 -1.7489 -1.2492 35 1 1.6766 -0.2074 -2.1392 36 1 3.1299 -0.7217 -1.2490 37 1 1.7782 -2.6445 0.3026 38 1 0.4490 -2.1744 1.3933 39 1 0.6002 -4.1267 5.7436 40 1 1.7240 -5.4733 7.4643 41 1 3.8894 -6.5282 6.9957 42 1 6.5325 -6.4175 7.6667 43 1 3.8182 -4.8837 3.0155 44 1 3.9667 -3.2370 3.4146 45 1 4.1076 -3.3482 1.6412 46 1 3.6990 -0.8172 3.3006 47 1 5.1390 -1.2533 2.3479 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279177254.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:47 Heat of formation + Delta-G solvation = -76.188260 kcal Electronic energy + Delta-G solvation = -27385.452932 eV Core-core repulsion = 23725.229441 eV Total energy + Delta-G solvation = -3660.223491 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.75515 -40.10392 -38.81298 -37.43960 -35.83608 -35.54180 -32.34285 -31.80476 -31.02917 -28.99906 -28.18534 -27.79877 -27.25686 -25.36007 -24.54763 -22.71005 -22.63136 -20.76386 -19.91749 -19.06406 -17.93433 -17.64131 -17.22709 -16.96032 -16.63618 -16.60552 -16.00979 -15.90745 -15.51694 -15.00338 -14.79367 -14.72506 -14.56751 -14.36423 -14.30819 -13.90868 -13.51697 -13.36838 -13.07872 -12.91712 -12.85354 -12.74164 -12.65334 -12.55201 -12.33617 -12.23911 -12.06876 -12.01208 -11.70787 -11.59798 -11.44365 -11.36391 -11.13431 -11.05738 -10.75415 -9.68407 -9.46773 -9.35870 -8.64598 -6.38067 0.41161 0.90990 1.42562 1.50882 1.54272 1.79231 1.96164 2.22154 2.65415 2.73204 3.50217 3.63756 3.65185 3.78241 3.89454 3.94865 4.07567 4.12621 4.28297 4.36802 4.37066 4.48585 4.52691 4.54570 4.71967 4.74939 4.80884 4.83865 4.88093 4.92207 4.96255 5.01809 5.06226 5.08785 5.13227 5.17117 5.25208 5.30042 5.37888 5.47933 5.50936 5.54250 5.77615 5.97502 6.00162 6.11117 6.18187 6.26359 6.59524 6.88009 6.91430 7.06252 8.30879 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018872 B = 0.003443 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.292304 B = 8131.395908 C = 9043.088144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.055 4.055 3 C -0.133 4.133 4 C -0.138 4.138 5 C 0.093 3.907 6 H 0.049 0.951 7 C 0.080 3.920 8 N -0.609 5.609 9 C 0.566 3.434 10 O -0.583 6.583 11 C -0.119 4.119 12 C -0.193 4.193 13 C -0.111 4.111 14 C -0.164 4.164 15 C 0.077 3.923 16 C -0.488 4.488 17 H 0.083 0.917 18 C 0.039 3.961 19 N -0.820 5.820 20 Si 0.980 3.020 21 H -0.256 1.256 22 H -0.270 1.270 23 H -0.264 1.264 24 C -0.195 4.195 25 C 0.056 3.944 26 C 0.053 3.947 27 O -0.373 6.373 28 H 0.054 0.946 29 H 0.081 0.919 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.071 0.929 36 H 0.057 0.943 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.102 0.898 40 H 0.118 0.882 41 H 0.114 0.886 42 H 0.290 0.710 43 H 0.122 0.878 44 H 0.108 0.892 45 H 0.086 0.914 46 H 0.049 0.951 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.255 10.723 -11.299 15.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.056 4.056 3 C -0.190 4.190 4 C -0.195 4.195 5 C 0.035 3.965 6 H 0.067 0.933 7 C -0.042 4.042 8 N -0.341 5.341 9 C 0.357 3.643 10 O -0.465 6.465 11 C -0.122 4.122 12 C -0.213 4.213 13 C -0.129 4.129 14 C -0.184 4.184 15 C 0.075 3.925 16 C -0.517 4.517 17 H 0.101 0.899 18 C -0.177 4.177 19 N -0.446 5.446 20 Si 0.801 3.199 21 H -0.181 1.181 22 H -0.195 1.195 23 H -0.188 1.188 24 C -0.215 4.215 25 C -0.066 4.066 26 C -0.025 4.025 27 O -0.292 6.292 28 H 0.073 0.927 29 H 0.100 0.900 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.120 0.880 40 H 0.136 0.864 41 H 0.132 0.868 42 H 0.101 0.899 43 H 0.140 0.860 44 H 0.126 0.874 45 H 0.104 0.896 46 H 0.067 0.933 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.666 10.848 -11.252 15.718 hybrid contribution 0.307 -0.834 0.723 1.146 sum -1.359 10.014 -10.528 14.594 Atomic orbital electron populations 1.21939 0.92957 1.02275 1.03004 1.20547 0.95906 0.96215 0.92932 1.21760 1.01391 0.93700 1.02132 1.21863 1.01488 0.99836 0.96330 1.22495 0.81518 0.93403 0.99124 0.93297 1.22566 0.99195 0.93060 0.89404 1.48068 1.08207 1.49389 1.28434 1.18826 0.86197 0.78475 0.80756 1.90632 1.14990 1.66596 1.74256 1.19492 0.96475 1.01724 0.94541 1.20566 1.00507 1.06591 0.93679 1.20892 0.95579 0.98117 0.98337 1.21627 0.94930 1.02790 0.99027 1.17870 0.93043 0.89823 0.91789 1.19806 1.00778 1.36076 0.95043 0.89883 1.26699 1.01226 0.95794 0.93933 1.69826 1.36515 1.35110 1.03122 0.85271 0.77116 0.78626 0.78900 1.18052 1.19494 1.18840 1.21498 0.95900 1.03328 1.00789 1.23140 0.78956 0.99156 1.05350 1.23076 1.00420 0.90614 0.88351 1.87910 1.19068 1.79944 1.42251 0.92674 0.90019 0.92792 0.92492 0.90948 0.93071 0.92918 0.90988 0.92421 0.89545 0.89284 0.87989 0.86404 0.86779 0.89921 0.85993 0.87393 0.89573 0.93307 0.85064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 8.13 71.98 0.59 -1.88 16 2 C -0.06 -1.04 0.63 -52.19 -0.03 -1.08 16 3 C -0.13 -2.22 8.33 71.98 0.60 -1.62 16 4 C -0.14 -2.41 7.99 71.98 0.58 -1.83 16 5 C 0.09 2.30 2.03 30.69 0.06 2.36 16 6 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 7 C 0.08 2.29 5.16 86.35 0.45 2.73 16 8 N -0.61 -21.05 3.02 -820.72 -2.48 -23.53 16 9 C 0.57 24.14 7.42 86.80 0.64 24.79 16 10 O -0.58 -27.47 16.23 -3.87 -0.06 -27.53 16 11 C -0.12 -5.45 5.36 -20.13 -0.11 -5.56 16 12 C -0.19 -8.96 9.61 22.70 0.22 -8.74 16 13 C -0.11 -5.12 10.01 22.18 0.22 -4.90 16 14 C -0.16 -8.25 8.70 22.77 0.20 -8.05 16 15 C 0.08 3.88 5.59 -21.32 -0.12 3.76 16 16 C -0.49 -24.10 9.06 23.47 0.21 -23.89 16 17 H 0.08 3.89 7.90 -2.91 -0.02 3.87 16 18 C 0.04 1.83 5.18 85.26 0.44 2.27 16 19 N -0.82 -39.84 10.80 21.83 0.24 -39.60 16 20 Si 0.98 35.42 29.59 68.60 2.03 37.45 16 21 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 22 H -0.27 -9.36 7.11 99.48 0.71 -8.66 16 23 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 24 C -0.20 -8.94 7.13 23.01 0.16 -8.78 16 25 C 0.06 1.71 4.90 86.35 0.42 2.14 16 26 C 0.05 1.34 6.98 72.08 0.50 1.84 16 27 O -0.37 -9.41 9.05 -148.98 -1.35 -10.76 16 28 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 30 H 0.05 1.01 6.62 -2.39 -0.02 0.99 16 31 H 0.06 1.05 7.69 -2.38 -0.02 1.03 16 32 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.05 0.96 6.28 -2.39 -0.01 0.94 16 35 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.06 1.11 7.68 -2.38 -0.02 1.09 16 37 H 0.09 2.28 6.09 -2.38 -0.01 2.27 16 38 H 0.09 2.76 5.82 -2.39 -0.01 2.75 16 39 H 0.10 4.56 7.96 -2.91 -0.02 4.53 16 40 H 0.12 4.76 8.06 -2.91 -0.02 4.73 16 41 H 0.11 5.93 6.01 -2.91 -0.02 5.91 16 42 H 0.29 12.79 8.30 -92.71 -0.77 12.02 16 43 H 0.12 5.07 5.72 -2.91 -0.02 5.06 16 44 H 0.11 3.84 4.56 -2.39 -0.01 3.83 16 45 H 0.09 2.43 7.95 -2.39 -0.02 2.41 16 46 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.13 2.69 8.14 -2.38 -0.02 2.67 16 Total: -1.00 -58.98 364.01 4.38 -54.60 By element: Atomic # 1 Polarization: 34.84 SS G_CDS: 0.97 Total: 35.80 kcal Atomic # 6 Polarization: -31.46 SS G_CDS: 5.04 Total: -26.43 kcal Atomic # 7 Polarization: -60.89 SS G_CDS: -2.24 Total: -63.13 kcal Atomic # 8 Polarization: -36.88 SS G_CDS: -1.41 Total: -38.29 kcal Atomic # 14 Polarization: 35.42 SS G_CDS: 2.03 Total: 37.45 kcal Total: -58.98 4.38 -54.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279177254.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.591 kcal (2) G-P(sol) polarization free energy of solvation -58.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds