Wall clock time and date at job start Tue Mar 31 2020 12:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46503 * 119.99994 * 2 1 4 4 C 1.50700 * 109.46943 * 270.00115 * 3 2 1 5 5 H 1.08002 * 120.00426 * 359.97438 * 4 3 2 6 6 C 1.37884 * 120.00025 * 180.02562 * 4 3 2 7 7 N 1.31512 * 119.99710 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 120.00275 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47263 * 89.99437 * 8 6 4 10 10 H 1.48497 * 109.46846 * 209.99985 * 8 6 4 11 11 H 1.48506 * 109.46659 * 329.99283 * 8 6 4 12 12 C 1.34770 * 119.99970 * 179.97438 * 2 1 3 13 13 O 1.21281 * 119.99992 * 179.97438 * 12 2 1 14 14 C 1.50699 * 120.00273 * 0.02562 * 12 2 1 15 15 C 1.52993 * 109.47433 * 179.97438 * 14 12 2 16 16 C 1.53001 * 109.47092 * 60.00323 * 15 14 12 17 17 C 1.52995 * 109.47535 * 300.00029 * 15 14 12 18 18 C 1.53002 * 109.47281 * 179.97438 * 15 14 12 19 19 C 1.50703 * 109.47361 * 180.02562 * 18 15 14 20 20 O 1.21250 * 119.99733 * 0.02562 * 19 18 15 21 21 C 1.47164 * 119.99851 * 180.02562 * 19 18 15 22 22 C 1.39855 * 120.16680 * 180.02562 * 21 19 18 23 23 C 1.37890 * 119.82316 * 179.97438 * 22 21 19 24 24 C 1.38404 * 120.17220 * 359.97438 * 23 22 21 25 25 C 1.38409 * 120.34828 * 0.04376 * 24 23 22 26 26 C 1.37888 * 120.17293 * 359.95823 * 25 24 23 27 27 H 1.08993 * 109.47258 * 270.00177 * 1 2 3 28 28 H 1.09005 * 109.46705 * 30.00078 * 1 2 3 29 29 H 1.08996 * 109.47034 * 149.99775 * 1 2 3 30 30 H 1.09001 * 109.47223 * 29.99596 * 3 2 1 31 31 H 1.08999 * 109.47269 * 150.00219 * 3 2 1 32 32 H 0.97002 * 120.00182 * 180.02562 * 7 6 4 33 33 H 1.09001 * 109.46863 * 59.99868 * 14 12 2 34 34 H 1.08998 * 109.46966 * 300.00639 * 14 12 2 35 35 H 1.08997 * 109.47359 * 180.02562 * 16 15 14 36 36 H 1.09006 * 109.46722 * 300.00092 * 16 15 14 37 37 H 1.09007 * 109.47088 * 59.99465 * 16 15 14 38 38 H 1.09001 * 109.47091 * 300.00117 * 17 15 14 39 39 H 1.09006 * 109.46801 * 59.99588 * 17 15 14 40 40 H 1.08997 * 109.47667 * 179.97438 * 17 15 14 41 41 H 1.09001 * 109.46706 * 60.00274 * 18 15 14 42 42 H 1.08995 * 109.47529 * 300.00501 * 18 15 14 43 43 H 1.07999 * 120.09085 * 359.69867 * 22 21 19 44 44 H 1.08000 * 119.91186 * 180.02562 * 23 22 21 45 45 H 1.07998 * 119.82754 * 180.02562 * 24 23 22 46 46 H 1.07996 * 119.91489 * 179.97438 * 25 24 23 47 47 H 1.07996 * 120.08508 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0981 1.0958 -2.2418 6 6 3.1269 2.8775 -1.6728 7 7 3.5543 3.6176 -0.6732 8 14 3.4376 3.4171 -3.4340 9 1 2.3078 4.2607 -3.8999 10 1 4.6983 4.1994 -3.4968 11 1 3.5539 2.2201 -4.3052 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0001 14 6 1.3855 -2.4723 0.0005 15 6 2.3796 -3.6352 0.0005 16 6 3.2592 -3.5542 1.2498 17 6 3.2593 -3.5542 -1.2486 18 6 1.6147 -4.9602 0.0012 19 6 2.5939 -6.1057 0.0018 20 8 3.7860 -5.8841 0.0022 21 6 2.1033 -7.4931 0.0019 22 6 3.0090 -8.5588 0.0031 23 6 2.5415 -9.8561 0.0037 24 6 1.1800 -10.1048 0.0038 25 6 0.2774 -9.0555 0.0023 26 6 0.7291 -7.7528 0.0016 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8899 -0.5139 30 1 1.6085 2.0284 0.5138 31 1 3.1500 1.1384 0.5138 32 1 4.0311 4.4435 -0.8504 33 1 0.7591 -2.5302 -0.8897 34 1 0.7584 -2.5298 0.8902 35 1 3.9678 -4.3823 1.2496 36 1 3.8042 -2.6101 1.2498 37 1 2.6325 -3.6118 2.1398 38 1 2.6327 -3.6119 -2.1387 39 1 3.8043 -2.6102 -1.2486 40 1 3.9679 -4.3824 -1.2484 41 1 0.9877 -5.0182 -0.8886 42 1 0.9882 -5.0177 0.8913 43 1 4.0717 -8.3663 -0.0011 44 1 3.2396 -10.6801 0.0050 45 1 0.8200 -11.1230 0.0047 46 1 -0.7835 -9.2577 0.0019 47 1 0.0236 -6.9351 0.0000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282535229.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:21 Heat of formation + Delta-G solvation = -47.451965 kcal Electronic energy + Delta-G solvation = -26470.406874 eV Core-core repulsion = 22811.429482 eV Total energy + Delta-G solvation = -3658.977392 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.62498 -39.35367 -38.43934 -35.89837 -34.54282 -32.58272 -32.03834 -31.30352 -29.08178 -28.05675 -27.04996 -26.78509 -25.49080 -24.03622 -22.89743 -22.59712 -20.42848 -18.92307 -18.07461 -17.50265 -16.50005 -16.28208 -16.06592 -15.60490 -15.26001 -15.13496 -14.89124 -14.79456 -14.27470 -14.00584 -13.86739 -13.79031 -13.40663 -13.00916 -12.75042 -12.63927 -12.20891 -12.12146 -12.00423 -11.78475 -11.73834 -11.45279 -11.19857 -11.03012 -10.96657 -10.82332 -10.73709 -10.65724 -10.52154 -10.36471 -10.08971 -9.56288 -9.42688 -9.36840 -9.28208 -8.52049 -8.40750 -7.55290 -6.01293 -4.05809 0.39603 1.00510 2.24740 3.31678 3.38465 3.42328 3.49218 3.52740 3.74842 4.10883 4.44661 4.47522 4.56206 4.67516 4.80676 4.96204 4.99526 5.03499 5.11978 5.25706 5.32760 5.45905 5.48952 5.52832 5.61248 5.62236 5.65754 5.78815 5.85283 5.94003 5.96115 6.05076 6.05826 6.10276 6.23561 6.38371 6.41185 6.44043 6.51560 6.64667 6.96077 7.02531 7.11537 7.49521 7.52722 7.63018 7.95667 8.27374 8.50174 8.94844 9.20570 9.59355 11.06664 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.026390 B = 0.002507 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.752323 B =11168.183061 C =11422.599961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.606 5.606 3 C 0.245 3.755 4 C -0.524 4.524 5 H 0.056 0.944 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.506 3.494 13 O -0.530 6.530 14 C -0.133 4.133 15 C -0.031 4.031 16 C -0.163 4.163 17 C -0.164 4.164 18 C -0.157 4.157 19 C 0.393 3.607 20 O -0.431 6.431 21 C -0.164 4.164 22 C -0.065 4.065 23 C -0.134 4.134 24 C -0.094 4.094 25 C -0.134 4.134 26 C -0.075 4.075 27 H 0.042 0.958 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.030 0.970 31 H 0.044 0.956 32 H 0.263 0.737 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.035 0.965 38 H 0.036 0.964 39 H 0.091 0.909 40 H 0.067 0.933 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.133 0.867 44 H 0.127 0.873 45 H 0.125 0.875 46 H 0.128 0.872 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.288 -25.661 2.916 27.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.338 5.338 3 C 0.126 3.874 4 C -0.563 4.563 5 H 0.074 0.926 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.293 3.707 13 O -0.408 6.408 14 C -0.173 4.173 15 C -0.031 4.031 16 C -0.219 4.219 17 C -0.220 4.220 18 C -0.195 4.195 19 C 0.270 3.730 20 O -0.305 6.305 21 C -0.165 4.165 22 C -0.083 4.083 23 C -0.152 4.152 24 C -0.112 4.112 25 C -0.152 4.152 26 C -0.093 4.093 27 H 0.061 0.939 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.048 0.952 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.109 0.891 40 H 0.086 0.914 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.151 0.849 44 H 0.145 0.855 45 H 0.143 0.857 46 H 0.146 0.854 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.915 -25.329 2.962 27.015 hybrid contribution -0.267 0.328 -1.008 1.093 sum -9.182 -25.001 1.954 26.705 Atomic orbital electron populations 1.21614 0.81712 1.02442 1.00241 1.48195 1.06032 1.07978 1.71583 1.19261 0.92547 0.78217 0.97391 1.21431 1.36327 1.06162 0.92336 0.92554 1.24942 0.95418 0.96464 0.97364 1.69932 1.38485 1.14325 1.30688 0.86509 0.77642 0.78578 0.84767 1.20701 1.21103 1.19899 1.20241 0.88185 0.84960 0.77345 1.90545 1.13901 1.86694 1.49632 1.21795 0.98755 0.93671 1.03055 1.20036 0.94495 0.90347 0.98270 1.22291 0.99974 1.05354 0.94321 1.22295 0.99990 1.05427 0.94319 1.22155 0.98887 0.94353 1.04070 1.22455 0.89912 0.88924 0.71718 1.90457 1.18884 1.86544 1.34650 1.20702 0.94404 0.95377 1.06038 1.21489 1.00333 0.91890 0.94585 1.21178 0.95841 0.96763 1.01395 1.21424 0.93400 0.99404 0.97005 1.21166 1.00060 0.92572 1.01416 1.21511 0.94487 0.97399 0.95901 0.93918 0.90937 0.92519 0.95228 0.93834 0.92765 0.89723 0.89887 0.91355 0.89283 0.94571 0.94492 0.89077 0.91424 0.88527 0.88559 0.84878 0.85501 0.85707 0.85424 0.84905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.32 10.24 59.85 0.61 1.94 16 2 N -0.61 -12.85 2.86 -182.95 -0.52 -13.38 16 3 C 0.25 6.48 5.16 -5.19 -0.03 6.45 16 4 C -0.52 -14.99 9.39 -34.44 -0.32 -15.32 16 5 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.90 -26.92 13.29 55.43 0.74 -26.19 16 8 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 12 C 0.51 10.33 7.09 -10.99 -0.08 10.25 16 13 O -0.53 -12.88 10.93 5.56 0.06 -12.82 16 14 C -0.13 -1.92 3.32 -27.89 -0.09 -2.01 16 15 C -0.03 -0.45 0.51 -154.51 -0.08 -0.53 16 16 C -0.16 -2.61 7.88 37.16 0.29 -2.31 16 17 C -0.16 -2.74 7.88 37.16 0.29 -2.45 16 18 C -0.16 -1.63 3.38 -27.88 -0.09 -1.72 16 19 C 0.39 4.60 6.53 -30.69 -0.20 4.39 16 20 O -0.43 -6.39 11.34 5.58 0.06 -6.32 16 21 C -0.16 -1.61 5.87 -105.07 -0.62 -2.23 16 22 C -0.06 -0.61 9.60 -39.10 -0.38 -0.99 16 23 C -0.13 -0.99 10.03 -39.65 -0.40 -1.39 16 24 C -0.09 -0.61 10.04 -39.46 -0.40 -1.00 16 25 C -0.13 -0.87 10.03 -39.65 -0.40 -1.27 16 26 C -0.07 -0.56 9.47 -39.11 -0.37 -0.93 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 29 H 0.06 0.71 6.44 -51.93 -0.33 0.38 16 30 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 31 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.08 1.08 7.40 -51.93 -0.38 0.69 16 34 H 0.08 1.00 8.11 -51.93 -0.42 0.58 16 35 H 0.07 1.12 5.51 -51.93 -0.29 0.83 16 36 H 0.09 1.74 5.51 -51.93 -0.29 1.45 16 37 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.09 1.88 5.51 -51.93 -0.29 1.60 16 40 H 0.07 1.14 5.52 -51.93 -0.29 0.85 16 41 H 0.10 0.81 8.09 -51.93 -0.42 0.39 16 42 H 0.10 0.78 8.09 -51.93 -0.42 0.36 16 43 H 0.13 1.28 7.65 -52.49 -0.40 0.88 16 44 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 45 H 0.12 0.51 8.06 -52.49 -0.42 0.08 16 46 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 47 H 0.13 0.72 7.05 -52.49 -0.37 0.35 16 LS Contribution 374.30 15.07 5.64 5.64 Total: -1.00 -34.52 374.30 -8.59 -43.11 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -7.20 Total: 0.31 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -2.35 Total: -7.48 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.21 Total: -39.57 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: 0.12 Total: -19.14 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.52 -8.59 -43.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282535229.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.341 kcal (2) G-P(sol) polarization free energy of solvation -34.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds