Wall clock time and date at job start Tue Mar 31 2020 12:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46503 * 119.99994 * 2 1 4 4 C 1.50700 * 109.46943 * 270.00115 * 3 2 1 5 5 H 1.08002 * 120.00426 * 359.97438 * 4 3 2 6 6 C 1.37884 * 120.00025 * 180.02562 * 4 3 2 7 7 N 1.31512 * 119.99710 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 120.00275 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47263 * 89.99437 * 8 6 4 10 10 H 1.48497 * 109.46846 * 209.99985 * 8 6 4 11 11 H 1.48506 * 109.46659 * 329.99283 * 8 6 4 12 12 C 1.34770 * 119.99970 * 179.97438 * 2 1 3 13 13 O 1.21281 * 119.99992 * 179.97438 * 12 2 1 14 14 C 1.50699 * 120.00273 * 0.02562 * 12 2 1 15 15 C 1.52993 * 109.47433 * 179.97438 * 14 12 2 16 16 C 1.53001 * 109.47092 * 60.00323 * 15 14 12 17 17 C 1.52995 * 109.47535 * 300.00029 * 15 14 12 18 18 C 1.53002 * 109.47281 * 179.97438 * 15 14 12 19 19 C 1.50703 * 109.47361 * 180.02562 * 18 15 14 20 20 O 1.21250 * 119.99733 * 0.02562 * 19 18 15 21 21 C 1.47164 * 119.99851 * 180.02562 * 19 18 15 22 22 C 1.39855 * 120.16680 * 180.02562 * 21 19 18 23 23 C 1.37890 * 119.82316 * 179.97438 * 22 21 19 24 24 C 1.38404 * 120.17220 * 359.97438 * 23 22 21 25 25 C 1.38409 * 120.34828 * 0.04376 * 24 23 22 26 26 C 1.37888 * 120.17293 * 359.95823 * 25 24 23 27 27 H 1.08993 * 109.47258 * 270.00177 * 1 2 3 28 28 H 1.09005 * 109.46705 * 30.00078 * 1 2 3 29 29 H 1.08996 * 109.47034 * 149.99775 * 1 2 3 30 30 H 1.09001 * 109.47223 * 29.99596 * 3 2 1 31 31 H 1.08999 * 109.47269 * 150.00219 * 3 2 1 32 32 H 0.97002 * 120.00182 * 180.02562 * 7 6 4 33 33 H 1.09001 * 109.46863 * 59.99868 * 14 12 2 34 34 H 1.08998 * 109.46966 * 300.00639 * 14 12 2 35 35 H 1.08997 * 109.47359 * 180.02562 * 16 15 14 36 36 H 1.09006 * 109.46722 * 300.00092 * 16 15 14 37 37 H 1.09007 * 109.47088 * 59.99465 * 16 15 14 38 38 H 1.09001 * 109.47091 * 300.00117 * 17 15 14 39 39 H 1.09006 * 109.46801 * 59.99588 * 17 15 14 40 40 H 1.08997 * 109.47667 * 179.97438 * 17 15 14 41 41 H 1.09001 * 109.46706 * 60.00274 * 18 15 14 42 42 H 1.08995 * 109.47529 * 300.00501 * 18 15 14 43 43 H 1.07999 * 120.09085 * 359.69867 * 22 21 19 44 44 H 1.08000 * 119.91186 * 180.02562 * 23 22 21 45 45 H 1.07998 * 119.82754 * 180.02562 * 24 23 22 46 46 H 1.07996 * 119.91489 * 179.97438 * 25 24 23 47 47 H 1.07996 * 120.08508 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0981 1.0958 -2.2418 6 6 3.1269 2.8775 -1.6728 7 7 3.5543 3.6176 -0.6732 8 14 3.4376 3.4171 -3.4340 9 1 2.3078 4.2607 -3.8999 10 1 4.6983 4.1994 -3.4968 11 1 3.5539 2.2201 -4.3052 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0001 14 6 1.3855 -2.4723 0.0005 15 6 2.3796 -3.6352 0.0005 16 6 3.2592 -3.5542 1.2498 17 6 3.2593 -3.5542 -1.2486 18 6 1.6147 -4.9602 0.0012 19 6 2.5939 -6.1057 0.0018 20 8 3.7860 -5.8841 0.0022 21 6 2.1033 -7.4931 0.0019 22 6 3.0090 -8.5588 0.0031 23 6 2.5415 -9.8561 0.0037 24 6 1.1800 -10.1048 0.0038 25 6 0.2774 -9.0555 0.0023 26 6 0.7291 -7.7528 0.0016 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8899 -0.5139 30 1 1.6085 2.0284 0.5138 31 1 3.1500 1.1384 0.5138 32 1 4.0311 4.4435 -0.8504 33 1 0.7591 -2.5302 -0.8897 34 1 0.7584 -2.5298 0.8902 35 1 3.9678 -4.3823 1.2496 36 1 3.8042 -2.6101 1.2498 37 1 2.6325 -3.6118 2.1398 38 1 2.6327 -3.6119 -2.1387 39 1 3.8043 -2.6102 -1.2486 40 1 3.9679 -4.3824 -1.2484 41 1 0.9877 -5.0182 -0.8886 42 1 0.9882 -5.0177 0.8913 43 1 4.0717 -8.3663 -0.0011 44 1 3.2396 -10.6801 0.0050 45 1 0.8200 -11.1230 0.0047 46 1 -0.7835 -9.2577 0.0019 47 1 0.0236 -6.9351 0.0000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282535229.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:20 Heat of formation + Delta-G solvation = -67.891040 kcal Electronic energy + Delta-G solvation = -26471.293178 eV Core-core repulsion = 22811.429482 eV Total energy + Delta-G solvation = -3659.863696 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.59646 -40.60215 -39.24853 -37.22878 -36.14806 -34.71075 -32.69558 -31.83743 -30.63476 -29.14672 -28.51885 -28.10419 -27.09254 -24.92945 -24.47663 -23.32449 -21.38273 -20.10206 -19.37232 -18.67775 -18.22753 -17.74761 -16.98713 -16.68840 -16.42826 -16.34208 -16.15523 -15.93687 -15.51373 -15.08117 -15.01437 -14.67037 -14.38553 -14.31443 -13.95751 -13.79617 -13.56009 -13.52687 -13.36716 -13.11139 -12.84605 -12.71467 -12.59189 -12.50634 -12.26642 -12.21313 -12.17285 -12.01060 -11.89071 -11.80580 -11.66309 -11.49905 -10.64387 -10.46029 -10.03803 -9.89474 -9.86828 -9.29736 -8.21815 -6.36763 -0.23592 0.48020 1.34411 1.38049 1.48117 1.53750 1.98255 2.34362 2.51759 2.92489 3.06775 3.07925 3.68792 3.91897 3.96199 3.99641 4.08508 4.15507 4.25830 4.39648 4.45555 4.53183 4.54574 4.64957 4.69319 4.73317 4.78351 4.79179 4.89279 4.96937 5.01241 5.03642 5.06313 5.12840 5.16830 5.20958 5.25346 5.39786 5.44522 5.55684 5.56181 5.57564 5.61274 5.70958 5.92496 6.01747 6.08608 6.70521 6.72320 6.91134 7.30407 7.65385 8.84648 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.026390 B = 0.002507 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.752323 B =11168.183061 C =11422.599961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.617 5.617 3 C 0.260 3.740 4 C -0.538 4.538 5 H 0.052 0.948 6 C 0.004 3.996 7 N -0.930 5.930 8 Si 0.967 3.033 9 H -0.261 1.261 10 H -0.282 1.282 11 H -0.274 1.274 12 C 0.490 3.510 13 O -0.581 6.581 14 C -0.118 4.118 15 C -0.029 4.029 16 C -0.157 4.157 17 C -0.159 4.159 18 C -0.149 4.149 19 C 0.392 3.608 20 O -0.480 6.480 21 C -0.187 4.187 22 C -0.089 4.089 23 C -0.142 4.142 24 C -0.091 4.091 25 C -0.135 4.135 26 C -0.071 4.071 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.099 0.901 30 H 0.020 0.980 31 H -0.006 1.006 32 H 0.266 0.734 33 H 0.117 0.883 34 H 0.123 0.877 35 H 0.057 0.943 36 H 0.043 0.957 37 H 0.057 0.943 38 H 0.052 0.948 39 H 0.042 0.958 40 H 0.058 0.942 41 H 0.130 0.870 42 H 0.133 0.867 43 H 0.114 0.886 44 H 0.141 0.859 45 H 0.152 0.848 46 H 0.158 0.842 47 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.635 -28.132 2.056 31.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.349 5.349 3 C 0.138 3.862 4 C -0.577 4.577 5 H 0.070 0.930 6 C -0.194 4.194 7 N -0.570 5.570 8 Si 0.791 3.209 9 H -0.186 1.186 10 H -0.208 1.208 11 H -0.199 1.199 12 C 0.280 3.720 13 O -0.462 6.462 14 C -0.157 4.157 15 C -0.030 4.030 16 C -0.214 4.214 17 C -0.216 4.216 18 C -0.186 4.186 19 C 0.272 3.728 20 O -0.358 6.358 21 C -0.188 4.188 22 C -0.107 4.107 23 C -0.160 4.160 24 C -0.109 4.109 25 C -0.153 4.153 26 C -0.089 4.089 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.117 0.883 30 H 0.038 0.962 31 H 0.012 0.988 32 H 0.075 0.925 33 H 0.135 0.865 34 H 0.141 0.859 35 H 0.076 0.924 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.077 0.923 41 H 0.148 0.852 42 H 0.151 0.849 43 H 0.132 0.868 44 H 0.159 0.841 45 H 0.170 0.830 46 H 0.176 0.824 47 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -13.327 -27.824 2.108 30.923 hybrid contribution 1.106 1.007 -0.687 1.646 sum -12.220 -26.817 1.421 29.505 Atomic orbital electron populations 1.21929 0.77978 1.04005 1.02481 1.48249 1.08371 1.06394 1.71838 1.18678 0.90975 0.80773 0.95759 1.21705 1.36504 1.06329 0.93119 0.92966 1.25887 0.95033 0.96578 1.01943 1.70058 1.39110 1.14805 1.33011 0.85422 0.78081 0.78180 0.79167 1.18584 1.20785 1.19875 1.21461 0.88057 0.86597 0.75859 1.90560 1.16655 1.87592 1.51430 1.21827 0.98400 0.89123 1.06377 1.19998 0.94291 0.93066 0.95608 1.22180 1.00329 1.02356 0.96570 1.22186 1.00367 1.02299 0.96704 1.22166 0.98452 0.90625 1.07334 1.22920 0.89474 0.90364 0.70012 1.90458 1.20806 1.87203 1.37321 1.20653 0.95745 0.94131 1.08275 1.21539 0.99774 0.93250 0.96156 1.21399 0.97103 0.96228 1.01274 1.21827 0.92778 1.01057 0.95249 1.21588 1.01612 0.92014 1.00056 1.21833 0.93510 0.98939 0.94605 0.91261 0.92066 0.88285 0.96246 0.98802 0.92496 0.86468 0.85896 0.92394 0.93754 0.92372 0.92912 0.93865 0.92336 0.85236 0.84922 0.86788 0.84133 0.83032 0.82424 0.82122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.24 10.24 127.77 1.31 3.55 16 2 N -0.62 -26.19 2.86 -851.13 -2.43 -28.62 16 3 C 0.26 14.38 5.16 85.63 0.44 14.83 16 4 C -0.54 -31.73 9.39 25.60 0.24 -31.49 16 5 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 6 C 0.00 0.25 5.46 84.66 0.46 0.71 16 7 N -0.93 -57.73 13.29 21.45 0.28 -57.44 16 8 Si 0.97 46.07 29.54 68.60 2.03 48.10 16 9 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 10 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 11 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 12 C 0.49 20.12 7.09 87.66 0.62 20.74 16 13 O -0.58 -30.15 10.93 -3.03 -0.03 -30.18 16 14 C -0.12 -3.01 3.32 29.85 0.10 -2.92 16 15 C -0.03 -0.79 0.51 -52.18 -0.03 -0.82 16 16 C -0.16 -5.15 7.88 71.98 0.57 -4.58 16 17 C -0.16 -5.44 7.88 71.98 0.57 -4.87 16 18 C -0.15 -2.50 3.38 29.85 0.10 -2.40 16 19 C 0.39 8.69 6.53 28.03 0.18 8.88 16 20 O -0.48 -14.87 11.34 -2.94 -0.03 -14.90 16 21 C -0.19 -3.36 5.87 -20.15 -0.12 -3.47 16 22 C -0.09 -1.68 9.60 22.58 0.22 -1.46 16 23 C -0.14 -1.90 10.03 22.23 0.22 -1.67 16 24 C -0.09 -0.86 10.04 22.35 0.22 -0.63 16 25 C -0.14 -1.14 10.03 22.23 0.22 -0.92 16 26 C -0.07 -0.78 9.47 22.58 0.21 -0.56 16 27 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.06 1.89 8.07 -2.38 -0.02 1.87 16 29 H 0.10 1.99 6.44 -2.39 -0.02 1.97 16 30 H 0.02 1.09 8.07 -2.39 -0.02 1.07 16 31 H -0.01 -0.40 7.42 -2.39 -0.02 -0.41 16 32 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 33 H 0.12 2.32 7.40 -2.39 -0.02 2.30 16 34 H 0.12 2.25 8.11 -2.39 -0.02 2.23 16 35 H 0.06 2.00 5.51 -2.39 -0.01 1.99 16 36 H 0.04 1.85 5.51 -2.38 -0.01 1.84 16 37 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 38 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.04 1.90 5.51 -2.38 -0.01 1.89 16 40 H 0.06 2.09 5.52 -2.39 -0.01 2.08 16 41 H 0.13 1.40 8.09 -2.39 -0.02 1.39 16 42 H 0.13 1.34 8.09 -2.39 -0.02 1.32 16 43 H 0.11 2.45 7.65 -2.91 -0.02 2.43 16 44 H 0.14 1.34 8.06 -2.91 -0.02 1.31 16 45 H 0.15 0.58 8.06 -2.91 -0.02 0.55 16 46 H 0.16 0.40 8.06 -2.91 -0.02 0.37 16 47 H 0.16 0.77 7.05 -2.91 -0.02 0.75 16 Total: -1.00 -84.65 374.30 6.32 -78.33 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: 0.96 Total: 11.81 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: 5.55 Total: -7.10 kcal Atomic # 7 Polarization: -83.91 SS G_CDS: -2.15 Total: -86.06 kcal Atomic # 8 Polarization: -45.02 SS G_CDS: -0.07 Total: -45.08 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -84.65 6.32 -78.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282535229.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.438 kcal (2) G-P(sol) polarization free energy of solvation -84.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds