Wall clock time and date at job start Tue Mar 31 2020 12:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.46874 * 2 1 4 4 C 1.52997 * 109.47172 * 120.00202 * 2 1 3 5 5 C 1.50699 * 109.47362 * 300.00000 * 4 2 1 6 6 O 1.21282 * 119.99760 * 0.02562 * 5 4 2 7 7 N 1.34768 * 120.00150 * 179.97438 * 5 4 2 8 8 C 1.46503 * 120.00179 * 180.02562 * 7 5 4 9 9 C 1.50701 * 109.47448 * 180.02562 * 8 7 5 10 10 C 1.38299 * 119.93217 * 269.73027 * 9 8 7 11 11 C 1.38093 * 120.06953 * 179.72477 * 10 9 8 12 12 C 1.38883 * 119.92808 * 0.56550 * 11 10 9 13 13 O 1.35754 * 120.06438 * 179.68623 * 12 11 10 14 14 C 1.34826 * 116.99724 * 174.49160 * 13 12 11 15 15 H 1.07998 * 120.00100 * 5.04739 * 14 13 12 16 16 C 1.38654 * 119.99970 * 185.05457 * 14 13 12 17 17 N 1.31562 * 120.00282 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 120.00220 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.47275 * 89.99838 * 18 16 14 20 20 H 1.48495 * 109.47094 * 210.00170 * 18 16 14 21 21 H 1.48506 * 109.46791 * 330.00186 * 18 16 14 22 22 C 1.38871 * 119.86468 * 359.70509 * 12 11 10 23 23 C 1.38101 * 119.93230 * 0.02562 * 22 12 11 24 24 C 1.53003 * 109.47383 * 240.00314 * 2 1 3 25 25 C 1.52997 * 117.49851 * 128.74229 * 24 2 1 26 26 C 1.53009 * 117.49563 * 60.08408 * 24 2 1 27 27 H 1.08997 * 109.47546 * 299.99384 * 1 2 3 28 28 H 1.09009 * 109.47529 * 59.99941 * 1 2 3 29 29 H 1.09005 * 109.47307 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46935 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47498 * 300.00155 * 3 2 1 32 32 H 1.09002 * 109.46635 * 60.00725 * 3 2 1 33 33 H 1.09002 * 109.46939 * 179.97438 * 4 2 1 34 34 H 1.09001 * 109.46887 * 60.00492 * 4 2 1 35 35 H 0.97000 * 120.00448 * 0.02562 * 7 5 4 36 36 H 1.09002 * 109.46848 * 59.99850 * 8 7 5 37 37 H 1.09001 * 109.46885 * 300.00464 * 8 7 5 38 38 H 1.08005 * 119.96050 * 359.97425 * 10 9 8 39 39 H 1.07999 * 120.03730 * 180.26989 * 11 10 9 40 40 H 0.96996 * 120.00604 * 179.97438 * 17 16 14 41 41 H 1.08002 * 120.03853 * 179.97438 * 22 12 11 42 42 H 1.07997 * 119.96732 * 179.97438 * 23 22 12 43 43 H 1.09000 * 115.54935 * 274.41683 * 24 2 1 44 44 H 1.09005 * 117.50498 * 0.02562 * 25 24 2 45 45 H 1.09001 * 117.50017 * 145.02226 * 25 24 2 46 46 H 1.09003 * 117.49489 * 214.97935 * 26 24 2 47 47 H 1.08997 * 117.49709 * 0.02562 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.5376 -0.0110 2.4797 6 8 0.8400 0.9749 2.3685 7 7 1.8628 -0.4718 3.7037 8 6 1.3740 0.2184 4.9000 9 6 1.8765 -0.4919 6.1304 10 6 1.1256 -1.5058 6.6969 11 6 1.5860 -2.1625 7.8211 12 6 2.7989 -1.7958 8.3897 13 8 3.2510 -2.4353 9.4986 14 6 4.4854 -2.1096 9.9323 15 1 5.0339 -1.3129 9.4518 16 6 5.0507 -2.7977 10.9950 17 7 6.2554 -2.4804 11.4179 18 14 4.1019 -4.1754 11.8264 19 1 4.4073 -5.4632 11.1530 20 1 4.4985 -4.2575 13.2550 21 1 2.6456 -3.9006 11.7319 22 6 3.5479 -0.7736 7.8218 23 6 3.0847 -0.1244 6.6943 24 6 2.0400 -0.7212 -1.2493 25 6 3.0762 0.0041 -2.1101 26 6 1.6373 -0.1481 -2.6097 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1299 1.4426 0.0005 31 1 1.6765 1.9564 -0.8899 32 1 1.6766 1.9563 0.8901 33 1 3.1300 -0.7217 1.2489 34 1 1.6767 -1.7490 1.2491 35 1 2.4205 -1.2604 3.7927 36 1 0.2840 0.2184 4.8995 37 1 1.7373 1.2462 4.9003 38 1 0.1800 -1.7870 6.2571 39 1 1.0012 -2.9571 8.2604 40 1 6.6508 -2.9614 12.1616 41 1 4.4913 -0.4859 8.2619 42 1 3.6666 0.6709 6.2525 43 1 2.1253 -1.8046 -1.1648 44 1 3.3950 0.9949 -1.7862 45 1 3.8431 -0.6021 -2.5923 46 1 1.4582 -0.8546 -3.4202 47 1 1.0094 0.7428 -2.6145 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293174480.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:38 Heat of formation + Delta-G solvation = -23.755923 kcal Electronic energy + Delta-G solvation = -25545.753971 eV Core-core repulsion = 21887.804117 eV Total energy + Delta-G solvation = -3657.949854 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.43810 -39.35977 -38.45645 -37.04141 -34.61248 -33.66019 -32.49896 -30.54370 -30.33004 -28.20802 -27.46806 -25.94406 -24.58207 -23.43408 -22.47417 -22.20778 -20.63985 -20.45014 -18.61064 -18.00971 -17.47399 -17.12367 -16.36995 -15.66325 -15.63926 -15.07013 -14.92922 -14.47795 -14.17116 -14.03479 -13.88035 -13.71906 -13.60319 -13.30593 -13.02132 -12.76208 -12.57435 -12.31035 -12.19971 -11.93826 -11.80139 -11.49968 -11.44806 -11.25571 -11.14321 -10.99157 -10.90972 -10.86001 -10.78804 -10.50791 -10.24380 -10.09674 -9.53626 -9.50496 -8.96505 -8.96120 -8.40524 -7.49907 -6.51713 -4.18791 1.93488 2.00157 2.63903 3.14962 3.19031 3.31587 3.34096 3.56498 4.14999 4.33066 4.43463 4.48149 4.65355 4.72630 4.75080 4.89844 4.95959 5.00148 5.07492 5.18371 5.29068 5.33028 5.35587 5.40659 5.52218 5.54167 5.61139 5.66445 5.70477 5.78260 5.84706 5.87250 5.89818 5.96852 6.00705 6.12137 6.22370 6.30290 6.34950 6.43192 6.60025 6.65396 6.87851 7.10146 7.16501 7.47444 7.57232 7.68789 7.92322 8.26699 8.82748 9.43306 10.55381 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.027649 B = 0.002062 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.461466 B =13579.012002 C =13834.461867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.013 4.013 3 C -0.156 4.156 4 C -0.132 4.132 5 C 0.511 3.489 6 O -0.539 6.539 7 N -0.724 5.724 8 C 0.178 3.822 9 C -0.206 4.206 10 C -0.057 4.057 11 C -0.195 4.195 12 C 0.166 3.834 13 O -0.213 6.213 14 C -0.392 4.392 15 H 0.108 0.892 16 C 0.064 3.936 17 N -0.875 5.875 18 Si 0.906 3.094 19 H -0.273 1.273 20 H -0.281 1.281 21 H -0.259 1.259 22 C -0.224 4.224 23 C -0.053 4.053 24 C -0.144 4.144 25 C -0.186 4.186 26 C -0.178 4.178 27 H 0.085 0.915 28 H 0.049 0.951 29 H 0.045 0.955 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.401 0.599 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.114 0.886 39 H 0.118 0.882 40 H 0.281 0.719 41 H 0.134 0.866 42 H 0.111 0.889 43 H 0.102 0.898 44 H 0.101 0.899 45 H 0.089 0.911 46 H 0.090 0.910 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.094 2.721 -22.403 23.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.014 4.014 3 C -0.213 4.213 4 C -0.172 4.172 5 C 0.298 3.702 6 O -0.418 6.418 7 N -0.375 5.375 8 C 0.055 3.945 9 C -0.207 4.207 10 C -0.075 4.075 11 C -0.214 4.214 12 C 0.113 3.887 13 O -0.117 6.117 14 C -0.467 4.467 15 H 0.125 0.875 16 C -0.140 4.140 17 N -0.512 5.512 18 Si 0.731 3.269 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.183 1.183 22 C -0.243 4.243 23 C -0.072 4.072 24 C -0.163 4.163 25 C -0.223 4.223 26 C -0.215 4.215 27 H 0.104 0.896 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.104 0.896 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.236 0.764 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.132 0.868 39 H 0.136 0.864 40 H 0.091 0.909 41 H 0.152 0.848 42 H 0.129 0.871 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.108 0.892 46 H 0.109 0.891 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.507 3.220 -22.135 23.931 hybrid contribution 0.296 -1.046 0.490 1.193 sum -8.211 2.174 -21.645 23.252 Atomic orbital electron populations 1.22074 0.93824 1.01423 1.03397 1.19732 0.96047 0.94874 0.90704 1.22223 1.00128 0.95498 1.03450 1.21749 1.02537 1.00432 0.92473 1.20646 0.80241 0.84669 0.84668 1.90562 1.38168 1.26590 1.86430 1.46390 1.53430 1.32136 1.05544 1.19979 0.98343 0.94998 0.81155 1.19293 0.98269 1.03072 1.00102 1.20532 0.98115 0.94354 0.94545 1.20215 0.97028 1.04762 0.99430 1.19183 0.92646 0.90878 0.85989 1.83575 1.33432 1.58305 1.36381 1.20783 0.89151 1.20031 1.16739 0.87499 1.24495 0.95310 0.98127 0.96045 1.69641 1.13857 1.41047 1.26661 0.86170 0.81115 0.81308 0.78262 1.19803 1.20676 1.18327 1.21281 1.03112 1.00327 0.99587 1.20702 0.94332 0.97575 0.94543 1.22377 1.03666 0.98790 0.91417 1.23164 0.92383 1.02695 1.04009 1.22921 0.98215 1.03274 0.97067 0.89632 0.93167 0.93566 0.93161 0.93167 0.89561 0.88902 0.89022 0.76422 0.91537 0.91534 0.86800 0.86374 0.90893 0.84795 0.87125 0.87993 0.88070 0.89225 0.89145 0.88800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 8.02 37.15 0.30 -1.15 16 2 C -0.01 -0.12 0.62 -154.51 -0.10 -0.21 16 3 C -0.16 -1.51 6.77 37.16 0.25 -1.25 16 4 C -0.13 -1.13 4.75 -27.89 -0.13 -1.26 16 5 C 0.51 5.80 7.24 -10.99 -0.08 5.72 16 6 O -0.54 -7.58 11.35 5.56 0.06 -7.52 16 7 N -0.72 -8.10 5.55 -61.47 -0.34 -8.44 16 8 C 0.18 2.28 5.80 -5.19 -0.03 2.25 16 9 C -0.21 -3.07 5.25 -104.57 -0.55 -3.62 16 10 C -0.06 -0.87 9.69 -39.61 -0.38 -1.26 16 11 C -0.20 -3.58 9.99 -39.40 -0.39 -3.98 16 12 C 0.17 3.61 6.65 -39.11 -0.26 3.35 16 13 O -0.21 -5.37 8.59 0.05 0.00 -5.37 16 14 C -0.39 -10.63 9.95 30.89 0.31 -10.32 16 15 H 0.11 2.96 5.44 -52.49 -0.29 2.67 16 16 C 0.06 1.75 5.49 -17.51 -0.10 1.65 16 17 N -0.87 -24.55 13.96 55.48 0.77 -23.78 16 18 Si 0.91 20.98 28.62 -169.99 -4.86 16.12 16 19 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.26 -6.02 7.11 56.52 0.40 -5.62 16 22 C -0.22 -4.51 9.17 -39.40 -0.36 -4.87 16 23 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 24 C -0.14 -1.11 5.15 -90.61 -0.47 -1.57 16 25 C -0.19 -1.34 9.57 -26.69 -0.26 -1.60 16 26 C -0.18 -1.28 9.39 -26.69 -0.25 -1.53 16 27 H 0.09 1.02 5.51 -51.93 -0.29 0.73 16 28 H 0.05 0.46 7.29 -51.92 -0.38 0.08 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.45 6.97 -51.93 -0.36 0.09 16 31 H 0.05 0.45 7.07 -51.93 -0.37 0.09 16 32 H 0.09 1.03 5.51 -51.93 -0.29 0.75 16 33 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.40 3.99 8.46 -40.82 -0.35 3.64 16 36 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 37 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 38 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 39 H 0.12 2.03 8.06 -52.49 -0.42 1.61 16 40 H 0.28 7.27 8.31 -40.82 -0.34 6.93 16 41 H 0.13 2.87 5.64 -52.49 -0.30 2.57 16 42 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 43 H 0.10 0.72 8.11 -51.93 -0.42 0.30 16 44 H 0.10 0.75 5.85 -51.93 -0.30 0.45 16 45 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.09 0.70 7.07 -51.93 -0.37 0.33 16 LS Contribution 374.86 15.07 5.65 5.65 Total: -1.00 -28.72 374.86 -8.66 -37.38 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -7.06 Total: 6.88 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: -2.88 Total: -20.91 kcal Atomic # 7 Polarization: -32.65 SS G_CDS: 0.43 Total: -32.22 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: 0.06 Total: -12.90 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.86 Total: 16.12 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -28.72 -8.66 -37.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293174480.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.622 kcal (2) G-P(sol) polarization free energy of solvation -28.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds