Wall clock time and date at job start Tue Mar 31 2020 12:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.46874 * 2 1 4 4 C 1.52997 * 109.47172 * 120.00202 * 2 1 3 5 5 C 1.50699 * 109.47362 * 300.00000 * 4 2 1 6 6 O 1.21282 * 119.99760 * 0.02562 * 5 4 2 7 7 N 1.34768 * 120.00150 * 179.97438 * 5 4 2 8 8 C 1.46503 * 120.00179 * 180.02562 * 7 5 4 9 9 C 1.50701 * 109.47448 * 180.02562 * 8 7 5 10 10 C 1.38299 * 119.93217 * 269.73027 * 9 8 7 11 11 C 1.38093 * 120.06953 * 179.72477 * 10 9 8 12 12 C 1.38883 * 119.92808 * 0.56550 * 11 10 9 13 13 O 1.35754 * 120.06438 * 179.68623 * 12 11 10 14 14 C 1.34826 * 116.99724 * 174.49160 * 13 12 11 15 15 H 1.07998 * 120.00100 * 5.04739 * 14 13 12 16 16 C 1.38654 * 119.99970 * 185.05457 * 14 13 12 17 17 N 1.31562 * 120.00282 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 120.00220 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.47275 * 89.99838 * 18 16 14 20 20 H 1.48495 * 109.47094 * 210.00170 * 18 16 14 21 21 H 1.48506 * 109.46791 * 330.00186 * 18 16 14 22 22 C 1.38871 * 119.86468 * 359.70509 * 12 11 10 23 23 C 1.38101 * 119.93230 * 0.02562 * 22 12 11 24 24 C 1.53003 * 109.47383 * 240.00314 * 2 1 3 25 25 C 1.52997 * 117.49851 * 128.74229 * 24 2 1 26 26 C 1.53009 * 117.49563 * 60.08408 * 24 2 1 27 27 H 1.08997 * 109.47546 * 299.99384 * 1 2 3 28 28 H 1.09009 * 109.47529 * 59.99941 * 1 2 3 29 29 H 1.09005 * 109.47307 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46935 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47498 * 300.00155 * 3 2 1 32 32 H 1.09002 * 109.46635 * 60.00725 * 3 2 1 33 33 H 1.09002 * 109.46939 * 179.97438 * 4 2 1 34 34 H 1.09001 * 109.46887 * 60.00492 * 4 2 1 35 35 H 0.97000 * 120.00448 * 0.02562 * 7 5 4 36 36 H 1.09002 * 109.46848 * 59.99850 * 8 7 5 37 37 H 1.09001 * 109.46885 * 300.00464 * 8 7 5 38 38 H 1.08005 * 119.96050 * 359.97425 * 10 9 8 39 39 H 1.07999 * 120.03730 * 180.26989 * 11 10 9 40 40 H 0.96996 * 120.00604 * 179.97438 * 17 16 14 41 41 H 1.08002 * 120.03853 * 179.97438 * 22 12 11 42 42 H 1.07997 * 119.96732 * 179.97438 * 23 22 12 43 43 H 1.09000 * 115.54935 * 274.41683 * 24 2 1 44 44 H 1.09005 * 117.50498 * 0.02562 * 25 24 2 45 45 H 1.09001 * 117.50017 * 145.02226 * 25 24 2 46 46 H 1.09003 * 117.49489 * 214.97935 * 26 24 2 47 47 H 1.08997 * 117.49709 * 0.02562 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.5376 -0.0110 2.4797 6 8 0.8400 0.9749 2.3685 7 7 1.8628 -0.4718 3.7037 8 6 1.3740 0.2184 4.9000 9 6 1.8765 -0.4919 6.1304 10 6 1.1256 -1.5058 6.6969 11 6 1.5860 -2.1625 7.8211 12 6 2.7989 -1.7958 8.3897 13 8 3.2510 -2.4353 9.4986 14 6 4.4854 -2.1096 9.9323 15 1 5.0339 -1.3129 9.4518 16 6 5.0507 -2.7977 10.9950 17 7 6.2554 -2.4804 11.4179 18 14 4.1019 -4.1754 11.8264 19 1 4.4073 -5.4632 11.1530 20 1 4.4985 -4.2575 13.2550 21 1 2.6456 -3.9006 11.7319 22 6 3.5479 -0.7736 7.8218 23 6 3.0847 -0.1244 6.6943 24 6 2.0400 -0.7212 -1.2493 25 6 3.0762 0.0041 -2.1101 26 6 1.6373 -0.1481 -2.6097 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1299 1.4426 0.0005 31 1 1.6765 1.9564 -0.8899 32 1 1.6766 1.9563 0.8901 33 1 3.1300 -0.7217 1.2489 34 1 1.6767 -1.7490 1.2491 35 1 2.4205 -1.2604 3.7927 36 1 0.2840 0.2184 4.8995 37 1 1.7373 1.2462 4.9003 38 1 0.1800 -1.7870 6.2571 39 1 1.0012 -2.9571 8.2604 40 1 6.6508 -2.9614 12.1616 41 1 4.4913 -0.4859 8.2619 42 1 3.6666 0.6709 6.2525 43 1 2.1253 -1.8046 -1.1648 44 1 3.3950 0.9949 -1.7862 45 1 3.8431 -0.6021 -2.5923 46 1 1.4582 -0.8546 -3.4202 47 1 1.0094 0.7428 -2.6145 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293174480.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:37 Heat of formation + Delta-G solvation = -39.154699 kcal Electronic energy + Delta-G solvation = -25546.421713 eV Core-core repulsion = 21887.804117 eV Total energy + Delta-G solvation = -3658.617595 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.32688 -40.87216 -39.30519 -38.49795 -35.69581 -34.44892 -34.37613 -31.92241 -31.70291 -29.16086 -28.21971 -27.57157 -25.93778 -24.19551 -23.71667 -23.01665 -22.07414 -21.36354 -19.84923 -19.31112 -19.10976 -18.03787 -17.22877 -16.80516 -16.48800 -16.42078 -16.06754 -15.80570 -15.66675 -15.49431 -15.00089 -14.80240 -14.55035 -14.33775 -14.31593 -14.18166 -14.05906 -13.53494 -13.33041 -13.06527 -12.71134 -12.56559 -12.50340 -12.43509 -12.31924 -12.15724 -11.96632 -11.94034 -11.81726 -11.62064 -11.30639 -11.09110 -10.93067 -10.70318 -10.42815 -9.94594 -9.83424 -9.08688 -8.51097 -6.24166 0.49507 0.54017 1.32308 1.35521 1.52086 1.76358 2.27249 2.34443 2.79982 2.98352 3.05715 3.14794 3.74507 3.76746 3.86358 4.00731 4.04057 4.13625 4.15104 4.26757 4.33016 4.42156 4.44522 4.54031 4.63236 4.72504 4.75220 4.82587 4.84125 4.87272 4.91890 4.95744 5.06301 5.15525 5.17177 5.21738 5.22335 5.33542 5.34133 5.42364 5.47703 5.53710 5.57885 5.70685 5.72997 5.78436 5.88029 6.18895 6.68013 6.82969 7.38770 7.55963 8.60096 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.027649 B = 0.002062 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.461466 B =13579.012002 C =13834.461867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.012 4.012 3 C -0.152 4.152 4 C -0.127 4.127 5 C 0.510 3.490 6 O -0.566 6.566 7 N -0.720 5.720 8 C 0.183 3.817 9 C -0.172 4.172 10 C -0.046 4.046 11 C -0.192 4.192 12 C 0.128 3.872 13 O -0.242 6.242 14 C -0.399 4.399 15 H 0.083 0.917 16 C 0.010 3.990 17 N -0.921 5.921 18 Si 0.971 3.029 19 H -0.265 1.265 20 H -0.269 1.269 21 H -0.262 1.262 22 C -0.238 4.238 23 C -0.051 4.051 24 C -0.145 4.145 25 C -0.186 4.186 26 C -0.179 4.179 27 H 0.062 0.938 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.107 0.893 34 H 0.112 0.888 35 H 0.410 0.590 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.154 0.846 39 H 0.131 0.869 40 H 0.285 0.715 41 H 0.109 0.891 42 H 0.133 0.867 43 H 0.113 0.887 44 H 0.097 0.903 45 H 0.099 0.901 46 H 0.100 0.900 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.978 1.771 -24.984 26.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.013 4.013 3 C -0.209 4.209 4 C -0.167 4.167 5 C 0.298 3.702 6 O -0.446 6.446 7 N -0.372 5.372 8 C 0.060 3.940 9 C -0.174 4.174 10 C -0.064 4.064 11 C -0.211 4.211 12 C 0.078 3.922 13 O -0.149 6.149 14 C -0.476 4.476 15 H 0.100 0.900 16 C -0.189 4.189 17 N -0.562 5.562 18 Si 0.793 3.207 19 H -0.190 1.190 20 H -0.194 1.194 21 H -0.186 1.186 22 C -0.258 4.258 23 C -0.070 4.070 24 C -0.163 4.163 25 C -0.223 4.223 26 C -0.216 4.216 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.126 0.874 34 H 0.130 0.870 35 H 0.246 0.754 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.171 0.829 39 H 0.149 0.851 40 H 0.095 0.905 41 H 0.127 0.873 42 H 0.151 0.849 43 H 0.131 0.869 44 H 0.115 0.885 45 H 0.117 0.883 46 H 0.118 0.882 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.408 2.279 -24.762 26.957 hybrid contribution 0.699 -0.529 0.931 1.279 sum -9.709 1.750 -23.831 25.792 Atomic orbital electron populations 1.22006 0.94529 1.01539 1.02271 1.19708 0.95445 0.94479 0.91640 1.22155 1.00389 0.96059 1.02266 1.21785 1.03369 1.00953 0.90601 1.21118 0.79574 0.84275 0.85191 1.90580 1.39393 1.27888 1.86783 1.46244 1.53581 1.32337 1.05024 1.19861 0.98763 0.94720 0.80643 1.19576 0.96626 1.01385 0.99764 1.20947 0.99231 0.93208 0.93017 1.20524 0.95621 1.05082 0.99852 1.19744 0.94320 0.91835 0.86283 1.83523 1.32590 1.60102 1.38724 1.20702 0.90182 1.19665 1.17008 0.89987 1.25298 0.96250 1.00587 0.96770 1.69727 1.15468 1.42976 1.28002 0.85212 0.79311 0.78454 0.77723 1.18960 1.19410 1.18650 1.21268 1.02504 1.00981 1.01001 1.20917 0.95211 0.97606 0.93258 1.22346 1.03951 0.99222 0.90818 1.23203 0.92612 1.02602 1.03841 1.22971 0.98163 1.03296 0.97185 0.91930 0.93088 0.92767 0.92604 0.93054 0.91982 0.87432 0.86970 0.75409 0.90715 0.91667 0.82869 0.85118 0.90548 0.87333 0.84939 0.86862 0.88506 0.88289 0.88161 0.89336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 8.02 71.98 0.58 -1.99 16 2 C -0.01 -0.19 0.62 -52.18 -0.03 -0.22 16 3 C -0.15 -2.71 6.77 71.98 0.49 -2.23 16 4 C -0.13 -1.77 4.75 29.85 0.14 -1.63 16 5 C 0.51 10.17 7.24 87.66 0.63 10.81 16 6 O -0.57 -14.94 11.35 -3.04 -0.03 -14.97 16 7 N -0.72 -13.61 5.55 -466.79 -2.59 -16.20 16 8 C 0.18 4.05 5.80 85.63 0.50 4.55 16 9 C -0.17 -4.57 5.25 -19.83 -0.10 -4.68 16 10 C -0.05 -1.23 9.69 22.25 0.22 -1.02 16 11 C -0.19 -6.68 9.99 22.39 0.22 -6.46 16 12 C 0.13 5.62 6.65 22.58 0.15 5.77 16 13 O -0.24 -12.66 8.59 -22.74 -0.20 -12.86 16 14 C -0.40 -22.86 9.95 67.92 0.68 -22.19 16 15 H 0.08 4.92 5.44 -2.91 -0.02 4.90 16 16 C 0.01 0.55 5.49 84.83 0.47 1.01 16 17 N -0.92 -54.02 13.96 21.61 0.30 -53.72 16 18 Si 0.97 44.28 28.62 68.60 1.96 46.25 16 19 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 20 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 21 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 22 C -0.24 -9.81 9.17 22.39 0.21 -9.61 16 23 C -0.05 -1.62 9.69 22.25 0.22 -1.41 16 24 C -0.15 -1.81 5.15 -10.79 -0.06 -1.86 16 25 C -0.19 -2.23 9.57 30.62 0.29 -1.94 16 26 C -0.18 -2.17 9.39 30.62 0.29 -1.88 16 27 H 0.06 1.41 5.51 -2.39 -0.01 1.40 16 28 H 0.05 0.86 7.29 -2.38 -0.02 0.84 16 29 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 30 H 0.06 0.91 6.97 -2.39 -0.02 0.89 16 31 H 0.05 0.87 7.07 -2.39 -0.02 0.86 16 32 H 0.06 1.44 5.51 -2.39 -0.01 1.43 16 33 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.41 6.55 8.46 -92.71 -0.78 5.77 16 36 H 0.07 1.62 8.08 -2.39 -0.02 1.60 16 37 H 0.07 1.53 8.08 -2.39 -0.02 1.51 16 38 H 0.15 3.07 8.06 -2.91 -0.02 3.04 16 39 H 0.13 4.20 8.06 -2.91 -0.02 4.18 16 40 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16 41 H 0.11 5.00 5.64 -2.91 -0.02 4.99 16 42 H 0.13 3.59 8.06 -2.91 -0.02 3.57 16 43 H 0.11 1.19 8.11 -2.39 -0.02 1.17 16 44 H 0.10 1.24 5.85 -2.38 -0.01 1.23 16 45 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.09 1.16 7.07 -2.39 -0.02 1.15 16 Total: -1.00 -65.67 374.86 4.52 -61.14 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: 0.20 Total: 25.30 kcal Atomic # 6 Polarization: -39.83 SS G_CDS: 4.88 Total: -34.95 kcal Atomic # 7 Polarization: -67.62 SS G_CDS: -2.29 Total: -69.91 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -0.23 Total: -27.83 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.96 Total: 46.25 kcal Total: -65.67 4.52 -61.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293174480.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.988 kcal (2) G-P(sol) polarization free energy of solvation -65.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds