Wall clock time and date at job start Tue Mar 31 2020 12:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47316 * 2 1 4 4 C 1.52996 * 109.47630 * 120.00297 * 2 1 3 5 5 H 1.08999 * 112.73746 * 316.93202 * 4 2 1 6 6 N 1.47064 * 113.47261 * 186.19278 * 4 2 1 7 7 C 1.34776 * 136.05863 * 92.29703 * 6 4 2 8 8 O 1.21584 * 120.00308 * 355.34279 * 7 6 4 9 9 C 1.47540 * 119.99923 * 175.33968 * 7 6 4 10 10 C 1.39669 * 120.19610 * 24.73384 * 9 7 6 11 11 C 1.37829 * 119.91688 * 179.72324 * 10 9 7 12 12 C 1.38573 * 120.32733 * 359.97438 * 11 10 9 13 13 C 1.38027 * 120.39954 * 0.04172 * 12 11 10 14 14 C 1.38835 * 120.07059 * 359.96009 * 13 12 11 15 15 O 1.35522 * 120.15741 * 180.02562 * 14 13 12 16 16 C 1.34813 * 117.00356 * 6.11958 * 15 14 13 17 17 H 1.08006 * 119.99648 * 5.52080 * 16 15 14 18 18 C 1.38701 * 120.00026 * 185.52579 * 16 15 14 19 19 N 1.31511 * 119.99828 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99667 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47508 * 59.99711 * 20 18 16 22 22 H 1.48500 * 109.47048 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47335 * 299.99529 * 20 18 16 24 24 C 1.47065 * 87.88561 * 272.56042 * 6 4 2 25 25 C 1.53494 * 113.47150 * 87.75044 * 4 2 1 26 26 C 1.53001 * 114.21269 * 202.30011 * 25 4 2 27 27 C 1.52999 * 114.20686 * 335.13272 * 25 4 2 28 28 H 1.08999 * 109.46696 * 305.04729 * 1 2 3 29 29 H 1.08996 * 109.46972 * 65.04852 * 1 2 3 30 30 H 1.08998 * 109.47084 * 185.05217 * 1 2 3 31 31 H 1.09005 * 109.47186 * 240.00096 * 2 1 3 32 32 H 1.09001 * 109.47038 * 185.06577 * 3 2 1 33 33 H 1.09005 * 109.46939 * 305.06739 * 3 2 1 34 34 H 1.09000 * 109.46788 * 65.05920 * 3 2 1 35 35 H 1.08004 * 120.03884 * 359.70286 * 10 9 7 36 36 H 1.07998 * 119.83299 * 179.97438 * 11 10 9 37 37 H 1.07994 * 119.80043 * 180.02562 * 12 11 10 38 38 H 1.07993 * 119.96277 * 179.97438 * 13 12 11 39 39 H 0.97005 * 119.99773 * 179.97438 * 19 18 16 40 40 H 1.09000 * 113.46949 * 87.43521 * 24 6 4 41 41 H 1.09000 * 113.47038 * 217.87846 * 24 6 4 42 42 H 1.09002 * 109.46646 * 59.99809 * 26 25 4 43 43 H 1.08993 * 109.47493 * 180.02562 * 26 25 4 44 44 H 1.09000 * 109.47092 * 300.00772 * 26 25 4 45 45 H 1.09005 * 109.47460 * 63.65044 * 27 25 4 46 46 H 1.09000 * 109.47512 * 183.65074 * 27 25 4 47 47 H 1.08998 * 109.47052 * 303.65004 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 1.4882 -0.4478 2.1484 6 7 3.4997 -0.6478 1.4129 7 6 4.3654 0.1683 2.0462 8 8 3.9597 1.1690 2.6051 9 6 5.8054 -0.1526 2.0614 10 6 6.3589 -0.9461 1.0541 11 6 7.7059 -1.2376 1.0708 12 6 8.5156 -0.7467 2.0826 13 6 7.9824 0.0384 3.0849 14 6 6.6278 0.3423 3.0843 15 8 6.1026 1.1135 4.0672 16 6 6.9677 1.6592 4.9453 17 1 8.0315 1.5477 4.7955 18 6 6.4918 2.3637 6.0412 19 7 5.1964 2.4997 6.2233 20 14 7.6906 3.1203 7.2575 21 1 8.5601 4.0967 6.5534 22 1 6.9348 3.8151 8.3305 23 1 8.5301 2.0511 7.8555 24 6 3.5996 -1.8530 0.5760 25 6 2.1918 -2.2370 1.0607 26 6 2.1689 -3.0368 2.3648 27 6 1.2952 -2.8265 -0.0298 28 1 -0.3633 0.5901 0.8413 29 1 -0.3633 0.4335 -0.9317 30 1 -0.3633 -1.0237 0.0905 31 1 1.8933 -0.5138 -0.8900 32 1 3.1263 1.4438 -0.0907 33 1 1.6045 1.9819 -0.8412 34 1 1.7526 1.9295 0.9318 35 1 5.7321 -1.3311 0.2633 36 1 8.1324 -1.8517 0.2915 37 1 9.5700 -0.9801 2.0872 38 1 8.6198 0.4170 3.8702 39 1 4.8636 2.9921 6.9899 40 1 3.6474 -1.6375 -0.4914 41 1 4.3763 -2.5448 0.9021 42 1 1.2203 -2.8716 2.8757 43 1 2.2822 -4.0978 2.1425 44 1 2.9882 -2.7107 3.0055 45 1 1.5755 -2.4079 -0.9965 46 1 1.4164 -3.9095 -0.0540 47 1 0.2547 -2.5822 0.1839 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294124053.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:33 Heat of formation + Delta-G solvation = -1.915871 kcal Electronic energy + Delta-G solvation = -27807.358309 eV Core-core repulsion = 24150.355510 eV Total energy + Delta-G solvation = -3657.002799 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.02379 -39.13149 -37.12546 -36.29873 -34.35103 -32.40572 -32.28892 -30.43487 -28.92166 -27.62579 -26.81361 -26.50115 -25.68214 -25.25205 -22.64728 -21.49540 -20.68623 -19.39647 -18.15146 -17.78225 -17.10971 -16.26264 -15.61824 -15.41465 -14.98199 -14.65329 -14.35219 -14.10885 -13.95900 -13.69379 -13.66040 -13.51388 -13.02509 -12.91514 -12.67979 -12.47999 -12.17203 -12.03682 -11.95949 -11.83464 -11.70033 -11.45325 -11.33602 -11.17138 -11.15921 -11.02320 -10.86217 -10.83721 -10.67284 -10.51779 -10.44692 -9.78477 -9.56460 -8.88452 -8.79543 -8.25741 -8.11462 -7.28981 -6.43928 -4.03221 1.77616 2.33626 3.12447 3.14599 3.16964 3.31907 3.70728 3.94808 4.16287 4.57091 4.68435 4.90287 4.98638 5.06045 5.11474 5.15533 5.16573 5.23042 5.37452 5.48734 5.55550 5.58568 5.66653 5.68351 5.70885 5.73317 5.82198 5.84889 5.91239 5.95338 5.98936 6.01945 6.08433 6.15471 6.17428 6.23084 6.34081 6.43408 6.48078 6.59259 6.59981 6.77395 6.97247 7.09202 7.27617 7.31723 7.71726 7.94808 8.35430 8.96527 9.09960 9.68416 10.70753 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014453 B = 0.004271 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.854395 B = 6553.729017 C = 7559.408631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 C -0.140 4.140 4 C 0.146 3.854 5 H 0.081 0.919 6 N -0.642 5.642 7 C 0.591 3.409 8 O -0.502 6.502 9 C -0.218 4.218 10 C -0.043 4.043 11 C -0.231 4.231 12 C -0.052 4.052 13 C -0.238 4.238 14 C 0.189 3.811 15 O -0.132 6.132 16 C -0.401 4.401 17 H 0.093 0.907 18 C 0.044 3.956 19 N -0.838 5.838 20 Si 0.941 3.059 21 H -0.268 1.268 22 H -0.277 1.277 23 H -0.269 1.269 24 C 0.104 3.896 25 C -0.100 4.100 26 C -0.124 4.124 27 C -0.136 4.136 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.060 0.940 35 H 0.116 0.884 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.131 0.869 39 H 0.272 0.728 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.060 0.940 46 H 0.058 0.942 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.419 -10.767 -12.509 17.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.115 4.115 3 C -0.198 4.198 4 C 0.042 3.958 5 H 0.100 0.900 6 N -0.379 5.379 7 C 0.384 3.616 8 O -0.376 6.376 9 C -0.223 4.223 10 C -0.061 4.061 11 C -0.250 4.250 12 C -0.071 4.071 13 C -0.257 4.257 14 C 0.130 3.870 15 O -0.031 6.031 16 C -0.476 4.476 17 H 0.110 0.890 18 C -0.163 4.163 19 N -0.470 5.470 20 Si 0.765 3.235 21 H -0.194 1.194 22 H -0.202 1.202 23 H -0.194 1.194 24 C -0.020 4.020 25 C -0.101 4.101 26 C -0.181 4.181 27 C -0.193 4.193 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.134 0.866 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.149 0.851 39 H 0.082 0.918 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.079 0.921 46 H 0.077 0.923 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.873 -9.805 -11.768 16.405 hybrid contribution 0.877 0.377 0.531 1.092 sum -4.996 -9.428 -11.237 15.496 Atomic orbital electron populations 1.21937 0.94667 1.02078 1.01879 1.21322 0.95836 0.96965 0.97393 1.21714 1.01303 0.95016 1.01735 1.22511 0.82829 0.92627 0.97806 0.90047 1.49493 1.07084 1.29448 1.51904 1.17749 0.84757 0.81443 0.77684 1.90894 1.78410 1.24765 1.43508 1.18755 0.92283 1.11006 1.00208 1.20977 0.95079 0.94176 0.95902 1.20470 0.93927 1.08571 1.02034 1.20889 0.98489 0.94547 0.93134 1.21137 0.95303 1.06563 1.02728 1.19271 0.90930 0.88245 0.88570 1.84131 1.34962 1.51405 1.32591 1.21405 0.89321 1.32655 1.04265 0.88984 1.25367 0.96857 0.96831 0.97236 1.70095 1.12148 1.36748 1.27968 0.85792 0.79194 0.79248 0.79255 1.19350 1.20164 1.19389 1.23215 0.96797 0.86800 0.95163 1.22297 0.96033 0.94761 0.96980 1.21486 1.02636 0.98798 0.95154 1.21813 0.99539 1.00531 0.97447 0.92510 0.92660 0.91983 0.90856 0.92717 0.93250 0.92086 0.86604 0.87349 0.87229 0.85106 0.91821 0.90465 0.90368 0.92198 0.92199 0.91768 0.92072 0.92333 0.91623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.02 37.16 0.34 -1.13 16 2 C -0.10 -1.16 2.12 -90.62 -0.19 -1.35 16 3 C -0.14 -2.09 8.84 37.16 0.33 -1.76 16 4 C 0.15 2.09 3.25 -72.40 -0.24 1.85 16 5 H 0.08 1.33 8.10 -51.93 -0.42 0.91 16 6 N -0.64 -11.10 2.73 -178.43 -0.49 -11.58 16 7 C 0.59 13.56 7.24 -12.47 -0.09 13.47 16 8 O -0.50 -14.05 16.35 -14.90 -0.24 -14.30 16 9 C -0.22 -4.92 5.86 -104.81 -0.61 -5.54 16 10 C -0.04 -0.77 8.76 -39.20 -0.34 -1.12 16 11 C -0.23 -3.92 10.02 -39.61 -0.40 -4.31 16 12 C -0.05 -0.94 10.03 -39.54 -0.40 -1.34 16 13 C -0.24 -5.24 9.12 -39.44 -0.36 -5.60 16 14 C 0.19 4.81 6.63 -38.60 -0.26 4.55 16 15 O -0.13 -3.97 8.13 -19.39 -0.16 -4.13 16 16 C -0.40 -11.52 9.44 30.90 0.29 -11.23 16 17 H 0.09 2.40 5.31 -52.48 -0.28 2.13 16 18 C 0.04 1.26 5.49 -17.52 -0.10 1.16 16 19 N -0.84 -25.57 13.67 55.48 0.76 -24.81 16 20 Si 0.94 20.82 29.55 -169.99 -5.02 15.79 16 21 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 22 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 23 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 24 C 0.10 1.31 4.96 -8.37 -0.04 1.26 16 25 C -0.10 -1.11 1.50 -153.86 -0.23 -1.34 16 26 C -0.12 -1.43 9.24 37.16 0.34 -1.09 16 27 C -0.14 -1.09 8.04 37.16 0.30 -0.79 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.52 5.37 -51.93 -0.28 0.24 16 31 H 0.07 0.78 5.68 -51.93 -0.30 0.49 16 32 H 0.05 0.94 7.43 -51.93 -0.39 0.55 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.12 1.73 5.31 -52.48 -0.28 1.45 16 36 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 37 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 38 H 0.13 2.83 5.72 -52.49 -0.30 2.53 16 39 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 40 H 0.08 0.82 7.15 -51.93 -0.37 0.45 16 41 H 0.08 0.97 7.02 -51.93 -0.36 0.61 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 44 H 0.06 0.93 7.93 -51.93 -0.41 0.52 16 45 H 0.06 0.45 6.46 -51.93 -0.34 0.12 16 46 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 47 H 0.06 0.50 5.85 -51.93 -0.30 0.19 16 LS Contribution 369.94 15.07 5.57 5.57 Total: -1.00 -34.63 369.94 -8.19 -42.82 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -6.96 Total: 4.93 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: -1.66 Total: -14.31 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.27 Total: -36.39 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.40 Total: -18.43 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.63 -8.19 -42.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294124053.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.908 kcal (2) G-P(sol) polarization free energy of solvation -34.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds