Wall clock time and date at job start Tue Mar 31 2020 12:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47316 * 2 1 4 4 C 1.52996 * 109.47630 * 120.00297 * 2 1 3 5 5 H 1.08999 * 112.73746 * 316.93202 * 4 2 1 6 6 N 1.47064 * 113.47261 * 186.19278 * 4 2 1 7 7 C 1.34776 * 136.05863 * 92.29703 * 6 4 2 8 8 O 1.21584 * 120.00308 * 355.34279 * 7 6 4 9 9 C 1.47540 * 119.99923 * 175.33968 * 7 6 4 10 10 C 1.39669 * 120.19610 * 24.73384 * 9 7 6 11 11 C 1.37829 * 119.91688 * 179.72324 * 10 9 7 12 12 C 1.38573 * 120.32733 * 359.97438 * 11 10 9 13 13 C 1.38027 * 120.39954 * 0.04172 * 12 11 10 14 14 C 1.38835 * 120.07059 * 359.96009 * 13 12 11 15 15 O 1.35522 * 120.15741 * 180.02562 * 14 13 12 16 16 C 1.34813 * 117.00356 * 6.11958 * 15 14 13 17 17 H 1.08006 * 119.99648 * 5.52080 * 16 15 14 18 18 C 1.38701 * 120.00026 * 185.52579 * 16 15 14 19 19 N 1.31511 * 119.99828 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99667 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47508 * 59.99711 * 20 18 16 22 22 H 1.48500 * 109.47048 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47335 * 299.99529 * 20 18 16 24 24 C 1.47065 * 87.88561 * 272.56042 * 6 4 2 25 25 C 1.53494 * 113.47150 * 87.75044 * 4 2 1 26 26 C 1.53001 * 114.21269 * 202.30011 * 25 4 2 27 27 C 1.52999 * 114.20686 * 335.13272 * 25 4 2 28 28 H 1.08999 * 109.46696 * 305.04729 * 1 2 3 29 29 H 1.08996 * 109.46972 * 65.04852 * 1 2 3 30 30 H 1.08998 * 109.47084 * 185.05217 * 1 2 3 31 31 H 1.09005 * 109.47186 * 240.00096 * 2 1 3 32 32 H 1.09001 * 109.47038 * 185.06577 * 3 2 1 33 33 H 1.09005 * 109.46939 * 305.06739 * 3 2 1 34 34 H 1.09000 * 109.46788 * 65.05920 * 3 2 1 35 35 H 1.08004 * 120.03884 * 359.70286 * 10 9 7 36 36 H 1.07998 * 119.83299 * 179.97438 * 11 10 9 37 37 H 1.07994 * 119.80043 * 180.02562 * 12 11 10 38 38 H 1.07993 * 119.96277 * 179.97438 * 13 12 11 39 39 H 0.97005 * 119.99773 * 179.97438 * 19 18 16 40 40 H 1.09000 * 113.46949 * 87.43521 * 24 6 4 41 41 H 1.09000 * 113.47038 * 217.87846 * 24 6 4 42 42 H 1.09002 * 109.46646 * 59.99809 * 26 25 4 43 43 H 1.08993 * 109.47493 * 180.02562 * 26 25 4 44 44 H 1.09000 * 109.47092 * 300.00772 * 26 25 4 45 45 H 1.09005 * 109.47460 * 63.65044 * 27 25 4 46 46 H 1.09000 * 109.47512 * 183.65074 * 27 25 4 47 47 H 1.08998 * 109.47052 * 303.65004 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 1.4882 -0.4478 2.1484 6 7 3.4997 -0.6478 1.4129 7 6 4.3654 0.1683 2.0462 8 8 3.9597 1.1690 2.6051 9 6 5.8054 -0.1526 2.0614 10 6 6.3589 -0.9461 1.0541 11 6 7.7059 -1.2376 1.0708 12 6 8.5156 -0.7467 2.0826 13 6 7.9824 0.0384 3.0849 14 6 6.6278 0.3423 3.0843 15 8 6.1026 1.1135 4.0672 16 6 6.9677 1.6592 4.9453 17 1 8.0315 1.5477 4.7955 18 6 6.4918 2.3637 6.0412 19 7 5.1964 2.4997 6.2233 20 14 7.6906 3.1203 7.2575 21 1 8.5601 4.0967 6.5534 22 1 6.9348 3.8151 8.3305 23 1 8.5301 2.0511 7.8555 24 6 3.5996 -1.8530 0.5760 25 6 2.1918 -2.2370 1.0607 26 6 2.1689 -3.0368 2.3648 27 6 1.2952 -2.8265 -0.0298 28 1 -0.3633 0.5901 0.8413 29 1 -0.3633 0.4335 -0.9317 30 1 -0.3633 -1.0237 0.0905 31 1 1.8933 -0.5138 -0.8900 32 1 3.1263 1.4438 -0.0907 33 1 1.6045 1.9819 -0.8412 34 1 1.7526 1.9295 0.9318 35 1 5.7321 -1.3311 0.2633 36 1 8.1324 -1.8517 0.2915 37 1 9.5700 -0.9801 2.0872 38 1 8.6198 0.4170 3.8702 39 1 4.8636 2.9921 6.9899 40 1 3.6474 -1.6375 -0.4914 41 1 4.3763 -2.5448 0.9021 42 1 1.2203 -2.8716 2.8757 43 1 2.2822 -4.0978 2.1425 44 1 2.9882 -2.7107 3.0055 45 1 1.5755 -2.4079 -0.9965 46 1 1.4164 -3.9095 -0.0540 47 1 0.2547 -2.5822 0.1839 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294124053.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:32 Heat of formation + Delta-G solvation = -24.000471 kcal Electronic energy + Delta-G solvation = -27808.315969 eV Core-core repulsion = 24150.355510 eV Total energy + Delta-G solvation = -3657.960459 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.26445 -40.84678 -38.90156 -38.04248 -35.42943 -34.37527 -33.60434 -31.96284 -30.62595 -28.56066 -28.02396 -27.68404 -27.27534 -26.69257 -24.20687 -23.14034 -21.83279 -20.84728 -19.93318 -19.10793 -18.67709 -17.89902 -17.13246 -16.72344 -16.36733 -16.07917 -15.99509 -15.65307 -15.49723 -15.32525 -14.75616 -14.67434 -14.50586 -14.49273 -14.20941 -13.69585 -13.58082 -13.31466 -13.05398 -13.02086 -12.83577 -12.76269 -12.72056 -12.53843 -12.51219 -12.38963 -12.21000 -12.12405 -12.01909 -11.86866 -11.55359 -11.46390 -10.86536 -10.81273 -10.51951 -9.88917 -9.52915 -9.05725 -8.49111 -6.19745 0.13621 0.68506 1.28793 1.42366 1.47367 1.94067 2.04024 2.13370 2.82228 3.12730 3.17241 3.41814 3.57720 3.80871 3.94125 3.96992 4.06200 4.13595 4.22236 4.25691 4.35738 4.49336 4.52727 4.55004 4.56961 4.64388 4.74995 4.79725 4.82440 4.90317 4.93872 4.97748 5.01973 5.04969 5.05995 5.13928 5.16439 5.20424 5.22024 5.31743 5.40849 5.44417 5.48182 5.61708 5.65238 5.66006 5.93348 6.14448 6.87046 6.90676 7.42035 7.76280 8.72370 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014453 B = 0.004271 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.854395 B = 6553.729017 C = 7559.408631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.085 4.085 3 C -0.136 4.136 4 C 0.131 3.869 5 H 0.043 0.957 6 N -0.644 5.644 7 C 0.579 3.421 8 O -0.578 6.578 9 C -0.237 4.237 10 C -0.037 4.037 11 C -0.198 4.198 12 C -0.042 4.042 13 C -0.255 4.255 14 C 0.146 3.854 15 O -0.198 6.198 16 C -0.425 4.425 17 H 0.106 0.894 18 C -0.024 4.024 19 N -0.911 5.911 20 Si 1.024 2.976 21 H -0.256 1.256 22 H -0.272 1.272 23 H -0.250 1.250 24 C 0.099 3.901 25 C -0.077 4.077 26 C -0.126 4.126 27 C -0.130 4.130 28 H 0.035 0.965 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.025 0.975 33 H 0.075 0.925 34 H 0.018 0.982 35 H 0.156 0.844 36 H 0.166 0.834 37 H 0.156 0.844 38 H 0.124 0.876 39 H 0.271 0.729 40 H 0.114 0.886 41 H 0.086 0.914 42 H 0.060 0.940 43 H 0.091 0.909 44 H 0.022 0.978 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.035 -14.721 -16.905 22.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.104 4.104 3 C -0.194 4.194 4 C 0.028 3.972 5 H 0.061 0.939 6 N -0.379 5.379 7 C 0.372 3.628 8 O -0.458 6.458 9 C -0.241 4.241 10 C -0.055 4.055 11 C -0.216 4.216 12 C -0.060 4.060 13 C -0.275 4.275 14 C 0.091 3.909 15 O -0.102 6.102 16 C -0.501 4.501 17 H 0.123 0.877 18 C -0.222 4.222 19 N -0.547 5.547 20 Si 0.842 3.158 21 H -0.180 1.180 22 H -0.197 1.197 23 H -0.174 1.174 24 C -0.023 4.023 25 C -0.078 4.078 26 C -0.183 4.183 27 C -0.187 4.187 28 H 0.054 0.946 29 H 0.095 0.905 30 H 0.104 0.896 31 H 0.125 0.875 32 H 0.044 0.956 33 H 0.094 0.906 34 H 0.037 0.963 35 H 0.173 0.827 36 H 0.183 0.817 37 H 0.174 0.826 38 H 0.141 0.859 39 H 0.080 0.920 40 H 0.132 0.868 41 H 0.105 0.895 42 H 0.079 0.921 43 H 0.110 0.890 44 H 0.041 0.959 45 H 0.097 0.903 46 H 0.099 0.901 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.479 -13.867 -16.265 21.838 hybrid contribution 0.468 1.305 1.523 2.059 sum -4.011 -12.562 -14.742 19.779 Atomic orbital electron populations 1.21929 0.92551 1.03469 1.02156 1.21333 0.97483 0.94556 0.97060 1.21681 0.99566 0.97554 1.00586 1.22937 0.80733 0.95914 0.97649 0.93899 1.49525 1.08148 1.29426 1.50797 1.18023 0.85826 0.81248 0.77672 1.90847 1.79681 1.28272 1.46961 1.19251 0.92398 1.11623 1.00833 1.21448 0.96494 0.92510 0.95037 1.21190 0.92848 1.05937 1.01651 1.21433 1.00972 0.92130 0.91439 1.21297 0.93852 1.07972 1.04341 1.20071 0.93134 0.88979 0.88710 1.84128 1.36324 1.54829 1.34875 1.21966 0.90070 1.33397 1.04661 0.87671 1.26798 0.98959 0.97174 0.99294 1.70301 1.15055 1.39873 1.29504 0.84601 0.76465 0.78636 0.76112 1.17986 1.19706 1.17402 1.23670 0.97964 0.84415 0.96209 1.22225 0.95850 0.91906 0.97826 1.21526 1.01079 1.00693 0.94972 1.21832 0.98868 1.01745 0.96288 0.94569 0.90544 0.89609 0.87542 0.95606 0.90586 0.96269 0.82677 0.81657 0.82627 0.85854 0.92005 0.86818 0.89550 0.92136 0.89043 0.95857 0.90253 0.90133 0.90779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.02 71.98 0.65 -1.90 16 2 C -0.09 -1.95 2.12 -10.79 -0.02 -1.97 16 3 C -0.14 -4.24 8.84 71.98 0.64 -3.60 16 4 C 0.13 3.80 3.25 41.79 0.14 3.93 16 5 H 0.04 1.55 8.10 -2.39 -0.02 1.53 16 6 N -0.64 -22.89 2.73 -836.69 -2.28 -25.17 16 7 C 0.58 28.70 7.24 86.70 0.63 29.32 16 8 O -0.58 -36.37 16.35 15.32 0.25 -36.12 16 9 C -0.24 -11.08 5.86 -19.98 -0.12 -11.20 16 10 C -0.04 -1.22 8.76 22.52 0.20 -1.02 16 11 C -0.20 -5.62 10.02 22.25 0.22 -5.39 16 12 C -0.04 -1.36 10.03 22.30 0.22 -1.13 16 13 C -0.26 -11.41 9.12 22.36 0.20 -11.20 16 14 C 0.15 7.91 6.63 22.91 0.15 8.06 16 15 O -0.20 -13.19 8.13 -0.77 -0.01 -13.20 16 16 C -0.43 -26.64 9.44 67.93 0.64 -26.00 16 17 H 0.11 5.91 5.31 -2.91 -0.02 5.89 16 18 C -0.02 -1.45 5.49 84.85 0.47 -0.98 16 19 N -0.91 -61.39 13.67 21.62 0.30 -61.10 16 20 Si 1.02 45.51 29.55 68.60 2.03 47.54 16 21 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 22 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 23 H -0.25 -10.17 7.11 99.48 0.71 -9.47 16 24 C 0.10 2.17 4.96 83.27 0.41 2.58 16 25 C -0.08 -1.53 1.50 -51.76 -0.08 -1.60 16 26 C -0.13 -2.77 9.24 71.98 0.67 -2.11 16 27 C -0.13 -1.38 8.04 71.98 0.58 -0.80 16 28 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.08 1.07 8.14 -2.39 -0.02 1.06 16 30 H 0.09 1.13 5.37 -2.39 -0.01 1.11 16 31 H 0.11 1.78 5.68 -2.38 -0.01 1.76 16 32 H 0.02 0.92 7.43 -2.39 -0.02 0.90 16 33 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 34 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.16 3.85 5.31 -2.91 -0.02 3.83 16 36 H 0.17 3.04 8.06 -2.91 -0.02 3.02 16 37 H 0.16 3.70 8.06 -2.91 -0.02 3.67 16 38 H 0.12 5.56 5.72 -2.91 -0.02 5.54 16 39 H 0.27 16.73 8.31 -92.70 -0.77 15.96 16 40 H 0.11 1.76 7.15 -2.39 -0.02 1.74 16 41 H 0.09 1.80 7.02 -2.39 -0.02 1.78 16 42 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.09 1.44 8.09 -2.39 -0.02 1.42 16 44 H 0.02 0.69 7.93 -2.39 -0.02 0.67 16 45 H 0.08 0.62 6.46 -2.38 -0.02 0.61 16 46 H 0.08 0.61 8.08 -2.39 -0.02 0.59 16 47 H 0.07 0.73 5.85 -2.39 -0.01 0.71 16 Total: -1.00 -93.86 369.94 6.86 -87.00 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: 0.97 Total: 26.06 kcal Atomic # 6 Polarization: -30.62 SS G_CDS: 5.59 Total: -25.02 kcal Atomic # 7 Polarization: -84.29 SS G_CDS: -1.99 Total: -86.27 kcal Atomic # 8 Polarization: -49.56 SS G_CDS: 0.24 Total: -49.31 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -93.86 6.86 -87.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294124053.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.003 kcal (2) G-P(sol) polarization free energy of solvation -93.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds