Wall clock time and date at job start Tue Mar 31 2020 12:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46754 * 2 1 4 4 C 1.52997 * 109.47303 * 239.99976 * 2 1 3 5 5 H 1.09003 * 112.96477 * 318.12295 * 4 2 1 6 6 N 1.47578 * 113.77151 * 89.94585 * 4 2 1 7 7 C 1.34773 * 134.49656 * 269.66226 * 6 4 2 8 8 O 1.21591 * 119.99724 * 4.73171 * 7 6 4 9 9 C 1.47539 * 120.00267 * 184.72963 * 7 6 4 10 10 C 1.39665 * 120.19456 * 327.53579 * 9 7 6 11 11 C 1.37828 * 119.91714 * 179.79011 * 10 9 7 12 12 C 1.38578 * 120.32239 * 0.48265 * 11 10 9 13 13 C 1.38022 * 120.40011 * 359.74503 * 12 11 10 14 14 C 1.38830 * 120.07556 * 0.02562 * 13 12 11 15 15 O 1.35515 * 120.16511 * 179.97438 * 14 13 12 16 16 C 1.34815 * 117.00018 * 6.12973 * 15 14 13 17 17 H 1.08003 * 120.00064 * 5.55631 * 16 15 14 18 18 C 1.38696 * 120.00299 * 185.55181 * 16 15 14 19 19 N 1.31515 * 119.99948 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00162 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47037 * 90.00092 * 20 18 16 22 22 H 1.48494 * 109.47542 * 210.00485 * 20 18 16 23 23 H 1.48502 * 109.47432 * 330.00589 * 20 18 16 24 24 C 1.47585 * 91.01147 * 89.66405 * 6 4 2 25 25 C 1.53940 * 86.11764 * 24.63869 * 24 6 4 26 26 C 1.53001 * 113.74472 * 222.04758 * 25 24 6 27 27 C 1.53003 * 113.83926 * 90.75174 * 25 24 6 28 28 H 1.08996 * 109.46993 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47139 * 300.00158 * 1 2 3 30 30 H 1.09000 * 109.46923 * 60.00047 * 1 2 3 31 31 H 1.09000 * 109.47098 * 119.99187 * 2 1 3 32 32 H 1.09007 * 109.47440 * 290.16394 * 3 2 1 33 33 H 1.08996 * 109.48049 * 50.16721 * 3 2 1 34 34 H 1.09001 * 109.46844 * 170.17125 * 3 2 1 35 35 H 1.08005 * 120.04358 * 0.02562 * 10 9 7 36 36 H 1.08003 * 119.84031 * 180.25395 * 11 10 9 37 37 H 1.08004 * 119.79715 * 179.77035 * 12 11 10 38 38 H 1.07997 * 119.96203 * 180.02562 * 13 12 11 39 39 H 0.97004 * 120.00027 * 179.97438 * 19 18 16 40 40 H 1.09004 * 113.76813 * 270.33739 * 24 6 4 41 41 H 1.09000 * 113.87143 * 138.95827 * 24 6 4 42 42 H 1.08992 * 109.47512 * 156.67765 * 26 25 24 43 43 H 1.09004 * 109.46686 * 276.67697 * 26 25 24 44 44 H 1.09004 * 109.47086 * 36.67261 * 26 25 24 45 45 H 1.09010 * 109.46713 * 323.27720 * 27 25 24 46 46 H 1.09005 * 109.47323 * 83.27549 * 27 25 24 47 47 H 1.08997 * 109.47338 * 203.27746 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 1 1.4773 -1.6265 -1.4772 6 7 2.2372 0.1678 -2.4106 7 6 1.4587 0.5713 -3.4341 8 8 0.2885 0.2435 -3.4738 9 6 2.0264 1.4108 -4.5063 10 6 3.0418 2.3257 -4.2189 11 6 3.5711 3.1040 -5.2258 12 6 3.0938 2.9909 -6.5218 13 6 2.0874 2.0945 -6.8198 14 6 1.5457 1.2989 -5.8193 15 8 0.5572 0.4186 -6.1097 16 6 0.2312 0.2712 -7.4095 17 1 0.8093 0.7729 -8.1715 18 6 -0.8465 -0.5247 -7.7683 19 7 -1.5507 -1.1353 -6.8405 20 14 -1.2986 -0.7283 -9.5693 21 1 -0.5695 -1.8922 -10.1341 22 1 -2.7612 -0.9543 -9.6901 23 1 -0.9242 0.4998 -10.3156 24 6 3.6292 0.4374 -2.0010 25 6 3.5667 -0.9173 -1.2726 26 6 4.2112 -0.9010 0.1150 27 6 4.0227 -2.1011 -2.1280 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5137 0.8901 32 1 1.8270 1.9033 -0.9647 33 1 1.5405 2.0046 0.7891 34 1 3.1157 1.4476 0.1754 35 1 3.4145 2.4205 -3.2096 36 1 4.3591 3.8082 -5.0029 37 1 3.5121 3.6076 -7.3036 38 1 1.7211 2.0118 -7.8323 39 1 -2.3047 -1.6916 -7.0914 40 1 3.7327 1.2916 -1.3319 41 1 4.3367 0.4583 -2.8300 42 1 3.7907 -1.7038 0.7205 43 1 5.2873 -1.0449 0.0174 44 1 4.0150 0.0576 0.5955 45 1 3.6994 -1.9507 -3.1582 46 1 5.1097 -2.1755 -2.0955 47 1 3.5838 -3.0202 -1.7400 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294124056.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:38 Heat of formation + Delta-G solvation = 0.745681 kcal Electronic energy + Delta-G solvation = -28001.290541 eV Core-core repulsion = 24344.403156 eV Total energy + Delta-G solvation = -3656.887385 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.07088 -39.13064 -37.12393 -36.29156 -34.09940 -32.35860 -32.24497 -30.37239 -28.92296 -28.08345 -26.86478 -26.33343 -25.71992 -25.29070 -22.63039 -21.49996 -20.43271 -19.26136 -18.11873 -17.84428 -17.09895 -16.18825 -15.97375 -15.48237 -15.08799 -14.60933 -14.41569 -14.21649 -13.89104 -13.75004 -13.42518 -13.27595 -12.93701 -12.83570 -12.56927 -12.47091 -12.44480 -12.19302 -12.00818 -11.71007 -11.64222 -11.56743 -11.33609 -11.12542 -11.06552 -10.89455 -10.76691 -10.74861 -10.59300 -10.56218 -10.42567 -10.00273 -9.56764 -8.86504 -8.80509 -8.24998 -8.08507 -7.29006 -6.43545 -4.03935 1.79928 2.33308 3.12250 3.13311 3.18093 3.30139 3.68882 3.94443 4.23928 4.56768 4.72704 4.90921 4.96619 5.03395 5.09891 5.15407 5.17044 5.27529 5.38860 5.54429 5.55278 5.57331 5.61554 5.72147 5.76338 5.78634 5.82444 5.86280 5.92464 5.96282 6.00650 6.03361 6.13494 6.14097 6.17713 6.21212 6.31332 6.44095 6.50514 6.59066 6.59608 6.78014 6.97848 7.09092 7.27770 7.31899 7.71582 7.94850 8.32702 8.96757 9.09253 9.68350 10.71031 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014288 B = 0.004413 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.212492 B = 6342.659647 C = 7204.725348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.154 4.154 4 C 0.148 3.852 5 H 0.085 0.915 6 N -0.636 5.636 7 C 0.586 3.414 8 O -0.506 6.506 9 C -0.216 4.216 10 C -0.041 4.041 11 C -0.229 4.229 12 C -0.053 4.053 13 C -0.237 4.237 14 C 0.189 3.811 15 O -0.136 6.136 16 C -0.402 4.402 17 H 0.093 0.907 18 C 0.044 3.956 19 N -0.838 5.838 20 Si 0.941 3.059 21 H -0.272 1.272 22 H -0.276 1.276 23 H -0.266 1.266 24 C 0.097 3.903 25 C -0.097 4.097 26 C -0.140 4.140 27 C -0.126 4.126 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.050 0.950 34 H 0.061 0.939 35 H 0.114 0.886 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.131 0.869 39 H 0.271 0.729 40 H 0.090 0.910 41 H 0.078 0.922 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.065 0.935 45 H 0.063 0.937 46 H 0.058 0.942 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.352 2.436 11.992 17.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.211 4.211 4 C 0.044 3.956 5 H 0.104 0.896 6 N -0.373 5.373 7 C 0.378 3.622 8 O -0.380 6.380 9 C -0.220 4.220 10 C -0.060 4.060 11 C -0.248 4.248 12 C -0.072 4.072 13 C -0.256 4.256 14 C 0.130 3.870 15 O -0.036 6.036 16 C -0.478 4.478 17 H 0.111 0.889 18 C -0.163 4.163 19 N -0.470 5.470 20 Si 0.765 3.235 21 H -0.198 1.198 22 H -0.201 1.201 23 H -0.191 1.191 24 C -0.026 4.026 25 C -0.097 4.097 26 C -0.198 4.198 27 C -0.184 4.184 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.131 0.869 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.149 0.851 39 H 0.081 0.919 40 H 0.107 0.893 41 H 0.096 0.904 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.082 0.918 46 H 0.077 0.923 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.141 1.985 11.901 16.423 hybrid contribution -0.216 0.080 -1.056 1.081 sum 10.926 2.065 10.845 15.532 Atomic orbital electron populations 1.21817 0.94518 1.01973 1.02124 1.21282 0.96527 0.96538 0.97017 1.22181 1.00437 0.96057 1.02377 1.22712 0.94673 0.92829 0.85405 0.89644 1.49840 1.13642 1.49729 1.24113 1.17867 0.84901 0.79225 0.80161 1.90874 1.15381 1.55549 1.76203 1.18764 1.05023 1.06265 0.91985 1.20848 0.93064 0.93868 0.98209 1.20468 1.05449 1.05464 0.93451 1.20884 0.94573 0.95755 0.95966 1.21134 1.02553 1.01693 1.00269 1.19250 0.88086 0.88058 0.91591 1.84116 1.42582 1.48755 1.28107 1.21437 1.14811 1.31380 0.80144 0.88945 1.25371 0.94993 0.95778 1.00183 1.70112 1.17104 1.26761 1.32989 0.85727 0.78265 0.79144 0.80362 1.19780 1.20141 1.19074 1.23640 0.84431 0.96780 0.97776 1.22426 0.95292 0.95992 0.96025 1.21849 1.00322 1.02375 0.95243 1.21544 1.00674 0.96161 0.99981 0.92774 0.93129 0.91596 0.90125 0.91850 0.93098 0.91990 0.86851 0.87335 0.87238 0.85118 0.91880 0.89285 0.90398 0.92194 0.92364 0.91637 0.91774 0.92256 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.16 37.16 0.34 -1.72 16 2 C -0.09 -1.14 2.42 -90.62 -0.22 -1.36 16 3 C -0.15 -1.74 7.40 37.16 0.28 -1.47 16 4 C 0.15 2.11 3.82 -66.87 -0.26 1.85 16 5 H 0.09 1.39 8.07 -51.93 -0.42 0.97 16 6 N -0.64 -10.85 2.18 -171.68 -0.38 -11.23 16 7 C 0.59 13.37 7.58 -12.47 -0.09 13.27 16 8 O -0.51 -14.13 16.39 -13.31 -0.22 -14.34 16 9 C -0.22 -4.84 5.79 -104.81 -0.61 -5.45 16 10 C -0.04 -0.74 8.65 -39.20 -0.34 -1.08 16 11 C -0.23 -3.86 10.03 -39.61 -0.40 -4.26 16 12 C -0.05 -0.96 10.03 -39.54 -0.40 -1.36 16 13 C -0.24 -5.21 9.12 -39.44 -0.36 -5.57 16 14 C 0.19 4.79 6.62 -38.60 -0.26 4.54 16 15 O -0.14 -4.10 8.32 -17.78 -0.15 -4.24 16 16 C -0.40 -11.53 9.44 30.90 0.29 -11.24 16 17 H 0.09 2.41 5.31 -52.48 -0.28 2.13 16 18 C 0.04 1.24 5.49 -17.52 -0.10 1.15 16 19 N -0.84 -25.60 13.67 55.48 0.76 -24.84 16 20 Si 0.94 20.80 29.55 -169.99 -5.02 15.78 16 21 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 22 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 23 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 24 C 0.10 1.21 4.62 -2.98 -0.01 1.20 16 25 C -0.10 -1.08 1.36 -153.59 -0.21 -1.29 16 26 C -0.14 -1.15 7.91 37.16 0.29 -0.85 16 27 C -0.13 -1.47 9.14 37.16 0.34 -1.13 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 1.17 7.97 -51.93 -0.41 0.76 16 31 H 0.08 0.79 6.96 -51.93 -0.36 0.43 16 32 H 0.06 0.89 6.61 -51.93 -0.34 0.55 16 33 H 0.05 0.53 8.12 -51.93 -0.42 0.11 16 34 H 0.06 0.57 4.25 -51.93 -0.22 0.35 16 35 H 0.11 1.68 6.00 -52.48 -0.31 1.36 16 36 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 37 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 38 H 0.13 2.84 5.72 -52.49 -0.30 2.54 16 39 H 0.27 7.56 8.31 -40.82 -0.34 7.23 16 40 H 0.09 0.94 4.81 -51.93 -0.25 0.69 16 41 H 0.08 0.98 7.56 -51.93 -0.39 0.59 16 42 H 0.06 0.46 7.98 -51.93 -0.41 0.05 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.49 5.13 -51.93 -0.27 0.23 16 45 H 0.06 0.93 7.99 -51.92 -0.42 0.52 16 46 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 367.65 15.07 5.54 5.54 Total: -1.00 -34.66 367.65 -8.07 -42.73 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -6.91 Total: 5.38 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: -1.70 Total: -14.77 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 0.38 Total: -36.07 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -0.37 Total: -18.59 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.66 -8.07 -42.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294124056.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.479 kcal (2) G-P(sol) polarization free energy of solvation -34.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds