Wall clock time and date at job start Tue Mar 31 2020 12:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46754 * 2 1 4 4 C 1.52997 * 109.47303 * 239.99976 * 2 1 3 5 5 H 1.09003 * 112.96477 * 318.12295 * 4 2 1 6 6 N 1.47578 * 113.77151 * 89.94585 * 4 2 1 7 7 C 1.34773 * 134.49656 * 269.66226 * 6 4 2 8 8 O 1.21591 * 119.99724 * 4.73171 * 7 6 4 9 9 C 1.47539 * 120.00267 * 184.72963 * 7 6 4 10 10 C 1.39665 * 120.19456 * 327.53579 * 9 7 6 11 11 C 1.37828 * 119.91714 * 179.79011 * 10 9 7 12 12 C 1.38578 * 120.32239 * 0.48265 * 11 10 9 13 13 C 1.38022 * 120.40011 * 359.74503 * 12 11 10 14 14 C 1.38830 * 120.07556 * 0.02562 * 13 12 11 15 15 O 1.35515 * 120.16511 * 179.97438 * 14 13 12 16 16 C 1.34815 * 117.00018 * 6.12973 * 15 14 13 17 17 H 1.08003 * 120.00064 * 5.55631 * 16 15 14 18 18 C 1.38696 * 120.00299 * 185.55181 * 16 15 14 19 19 N 1.31515 * 119.99948 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00162 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47037 * 90.00092 * 20 18 16 22 22 H 1.48494 * 109.47542 * 210.00485 * 20 18 16 23 23 H 1.48502 * 109.47432 * 330.00589 * 20 18 16 24 24 C 1.47585 * 91.01147 * 89.66405 * 6 4 2 25 25 C 1.53940 * 86.11764 * 24.63869 * 24 6 4 26 26 C 1.53001 * 113.74472 * 222.04758 * 25 24 6 27 27 C 1.53003 * 113.83926 * 90.75174 * 25 24 6 28 28 H 1.08996 * 109.46993 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47139 * 300.00158 * 1 2 3 30 30 H 1.09000 * 109.46923 * 60.00047 * 1 2 3 31 31 H 1.09000 * 109.47098 * 119.99187 * 2 1 3 32 32 H 1.09007 * 109.47440 * 290.16394 * 3 2 1 33 33 H 1.08996 * 109.48049 * 50.16721 * 3 2 1 34 34 H 1.09001 * 109.46844 * 170.17125 * 3 2 1 35 35 H 1.08005 * 120.04358 * 0.02562 * 10 9 7 36 36 H 1.08003 * 119.84031 * 180.25395 * 11 10 9 37 37 H 1.08004 * 119.79715 * 179.77035 * 12 11 10 38 38 H 1.07997 * 119.96203 * 180.02562 * 13 12 11 39 39 H 0.97004 * 120.00027 * 179.97438 * 19 18 16 40 40 H 1.09004 * 113.76813 * 270.33739 * 24 6 4 41 41 H 1.09000 * 113.87143 * 138.95827 * 24 6 4 42 42 H 1.08992 * 109.47512 * 156.67765 * 26 25 24 43 43 H 1.09004 * 109.46686 * 276.67697 * 26 25 24 44 44 H 1.09004 * 109.47086 * 36.67261 * 26 25 24 45 45 H 1.09010 * 109.46713 * 323.27720 * 27 25 24 46 46 H 1.09005 * 109.47323 * 83.27549 * 27 25 24 47 47 H 1.08997 * 109.47338 * 203.27746 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 1 1.4773 -1.6265 -1.4772 6 7 2.2372 0.1678 -2.4106 7 6 1.4587 0.5713 -3.4341 8 8 0.2885 0.2435 -3.4738 9 6 2.0264 1.4108 -4.5063 10 6 3.0418 2.3257 -4.2189 11 6 3.5711 3.1040 -5.2258 12 6 3.0938 2.9909 -6.5218 13 6 2.0874 2.0945 -6.8198 14 6 1.5457 1.2989 -5.8193 15 8 0.5572 0.4186 -6.1097 16 6 0.2312 0.2712 -7.4095 17 1 0.8093 0.7729 -8.1715 18 6 -0.8465 -0.5247 -7.7683 19 7 -1.5507 -1.1353 -6.8405 20 14 -1.2986 -0.7283 -9.5693 21 1 -0.5695 -1.8922 -10.1341 22 1 -2.7612 -0.9543 -9.6901 23 1 -0.9242 0.4998 -10.3156 24 6 3.6292 0.4374 -2.0010 25 6 3.5667 -0.9173 -1.2726 26 6 4.2112 -0.9010 0.1150 27 6 4.0227 -2.1011 -2.1280 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5137 0.8901 32 1 1.8270 1.9033 -0.9647 33 1 1.5405 2.0046 0.7891 34 1 3.1157 1.4476 0.1754 35 1 3.4145 2.4205 -3.2096 36 1 4.3591 3.8082 -5.0029 37 1 3.5121 3.6076 -7.3036 38 1 1.7211 2.0118 -7.8323 39 1 -2.3047 -1.6916 -7.0914 40 1 3.7327 1.2916 -1.3319 41 1 4.3367 0.4583 -2.8300 42 1 3.7907 -1.7038 0.7205 43 1 5.2873 -1.0449 0.0174 44 1 4.0150 0.0576 0.5955 45 1 3.6994 -1.9507 -3.1582 46 1 5.1097 -2.1755 -2.0955 47 1 3.5838 -3.0202 -1.7400 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294124056.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:37 Heat of formation + Delta-G solvation = -21.097594 kcal Electronic energy + Delta-G solvation = -28002.237737 eV Core-core repulsion = 24344.403156 eV Total energy + Delta-G solvation = -3657.834580 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.30059 -40.84651 -38.89995 -38.03251 -35.17156 -34.37530 -33.55616 -31.88520 -30.62335 -29.07208 -27.79596 -27.74996 -27.20230 -26.84827 -24.17936 -23.16080 -21.62036 -20.66968 -19.91075 -19.11672 -18.73233 -17.82169 -17.20941 -16.95058 -16.38498 -16.11567 -16.10541 -15.67880 -15.43457 -15.38110 -14.76119 -14.57946 -14.52065 -14.26378 -14.13043 -13.58851 -13.57192 -13.38893 -13.22207 -13.04312 -13.02544 -12.71310 -12.69444 -12.55562 -12.46080 -12.40579 -12.17402 -12.02855 -11.82307 -11.67931 -11.55571 -11.45330 -11.06027 -10.86858 -10.49888 -9.87124 -9.48605 -9.05352 -8.48969 -6.20533 0.16777 0.68721 1.28758 1.40822 1.48623 1.93536 2.03336 2.12895 2.81747 3.15960 3.19657 3.41821 3.59030 3.82034 3.93618 3.95667 4.05588 4.12372 4.24216 4.26271 4.34872 4.49908 4.51782 4.56286 4.63957 4.68529 4.76452 4.82624 4.85899 4.88976 4.92918 4.96699 5.01638 5.04136 5.05702 5.11324 5.17554 5.18649 5.24883 5.33362 5.35954 5.46336 5.50121 5.61028 5.65649 5.66742 5.93533 6.14808 6.84894 6.90728 7.42180 7.76180 8.72551 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014288 B = 0.004413 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.212492 B = 6342.659647 C = 7204.725348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.150 4.150 4 C 0.131 3.869 5 H 0.048 0.952 6 N -0.634 5.634 7 C 0.574 3.426 8 O -0.582 6.582 9 C -0.234 4.234 10 C -0.035 4.035 11 C -0.196 4.196 12 C -0.043 4.043 13 C -0.254 4.254 14 C 0.145 3.855 15 O -0.203 6.203 16 C -0.425 4.425 17 H 0.107 0.893 18 C -0.025 4.025 19 N -0.912 5.912 20 Si 1.024 2.976 21 H -0.260 1.260 22 H -0.272 1.272 23 H -0.247 1.247 24 C 0.094 3.906 25 C -0.076 4.076 26 C -0.134 4.134 27 C -0.128 4.128 28 H 0.045 0.955 29 H 0.075 0.925 30 H 0.014 0.986 31 H 0.120 0.880 32 H 0.030 0.970 33 H 0.064 0.936 34 H 0.096 0.904 35 H 0.153 0.847 36 H 0.166 0.834 37 H 0.156 0.844 38 H 0.123 0.877 39 H 0.271 0.729 40 H 0.124 0.876 41 H 0.082 0.918 42 H 0.069 0.931 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.021 0.979 46 H 0.089 0.911 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.508 5.076 13.837 22.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.105 4.105 3 C -0.207 4.207 4 C 0.028 3.972 5 H 0.067 0.933 6 N -0.369 5.369 7 C 0.366 3.634 8 O -0.463 6.463 9 C -0.238 4.238 10 C -0.053 4.053 11 C -0.214 4.214 12 C -0.061 4.061 13 C -0.273 4.273 14 C 0.090 3.910 15 O -0.106 6.106 16 C -0.500 4.500 17 H 0.124 0.876 18 C -0.223 4.223 19 N -0.548 5.548 20 Si 0.842 3.158 21 H -0.185 1.185 22 H -0.197 1.197 23 H -0.170 1.170 24 C -0.027 4.027 25 C -0.077 4.077 26 C -0.191 4.191 27 C -0.185 4.185 28 H 0.064 0.936 29 H 0.094 0.906 30 H 0.033 0.967 31 H 0.138 0.862 32 H 0.049 0.951 33 H 0.083 0.917 34 H 0.114 0.886 35 H 0.170 0.830 36 H 0.184 0.816 37 H 0.173 0.827 38 H 0.141 0.859 39 H 0.080 0.920 40 H 0.142 0.858 41 H 0.101 0.899 42 H 0.088 0.912 43 H 0.099 0.901 44 H 0.100 0.900 45 H 0.041 0.959 46 H 0.108 0.892 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 16.426 4.670 13.801 21.957 hybrid contribution -1.480 -0.543 -1.384 2.098 sum 14.946 4.127 12.417 19.865 Atomic orbital electron populations 1.21818 0.96733 1.01101 1.00735 1.21315 0.94612 0.97701 0.96921 1.22171 1.02705 0.94698 1.01138 1.23102 0.97218 0.91498 0.85368 0.93331 1.49923 1.15176 1.48556 1.23238 1.18173 0.84469 0.79141 0.81571 1.90825 1.18749 1.58541 1.78157 1.19254 1.06093 1.07409 0.91047 1.21311 0.91204 0.92072 1.00722 1.21184 1.04440 1.03762 0.92024 1.21421 0.92439 0.94186 0.98103 1.21286 1.04091 1.02674 0.99275 1.20044 0.88054 0.88902 0.93962 1.84114 1.45751 1.52196 1.28580 1.21995 1.15421 1.31920 0.80709 0.87622 1.26805 0.94535 0.95072 1.05882 1.70319 1.18797 1.29593 1.36103 0.84535 0.77935 0.79987 0.73314 1.18511 1.19724 1.16975 1.24077 0.81288 0.98826 0.98484 1.22329 0.92343 0.94832 0.98188 1.21853 1.01303 1.03729 0.92226 1.21577 1.02571 0.96736 0.97624 0.93563 0.90571 0.96698 0.86216 0.95071 0.91660 0.88581 0.82967 0.81648 0.82670 0.85939 0.92030 0.85842 0.89946 0.91217 0.90143 0.90029 0.95942 0.89209 0.92037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.31 9.16 71.98 0.66 -3.65 16 2 C -0.09 -1.97 2.42 -10.79 -0.03 -2.00 16 3 C -0.15 -2.94 7.40 71.98 0.53 -2.40 16 4 C 0.13 3.82 3.82 45.09 0.17 3.99 16 5 H 0.05 1.75 8.07 -2.39 -0.02 1.73 16 6 N -0.63 -22.37 2.18 -815.32 -1.78 -24.15 16 7 C 0.57 28.34 7.58 86.70 0.66 28.99 16 8 O -0.58 -36.61 16.39 13.78 0.23 -36.38 16 9 C -0.23 -10.90 5.79 -19.99 -0.12 -11.01 16 10 C -0.03 -1.15 8.65 22.52 0.19 -0.95 16 11 C -0.20 -5.53 10.03 22.25 0.22 -5.31 16 12 C -0.04 -1.41 10.03 22.30 0.22 -1.19 16 13 C -0.25 -11.34 9.12 22.36 0.20 -11.14 16 14 C 0.14 7.83 6.62 22.91 0.15 7.99 16 15 O -0.20 -13.47 8.32 -2.23 -0.02 -13.49 16 16 C -0.42 -26.53 9.44 67.93 0.64 -25.89 16 17 H 0.11 5.92 5.31 -2.91 -0.02 5.91 16 18 C -0.02 -1.50 5.49 84.85 0.47 -1.03 16 19 N -0.91 -61.51 13.67 21.62 0.30 -61.21 16 20 Si 1.02 45.45 29.55 68.60 2.03 47.48 16 21 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 22 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 23 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 24 C 0.09 2.08 4.62 86.48 0.40 2.48 16 25 C -0.08 -1.53 1.36 -51.52 -0.07 -1.60 16 26 C -0.13 -1.46 7.91 71.98 0.57 -0.89 16 27 C -0.13 -2.86 9.14 71.98 0.66 -2.20 16 28 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.01 0.56 7.97 -2.39 -0.02 0.54 16 31 H 0.12 1.88 6.96 -2.39 -0.02 1.86 16 32 H 0.03 0.82 6.61 -2.38 -0.02 0.80 16 33 H 0.06 1.13 8.12 -2.39 -0.02 1.11 16 34 H 0.10 1.19 4.25 -2.39 -0.01 1.18 16 35 H 0.15 3.78 6.00 -2.91 -0.02 3.76 16 36 H 0.17 3.03 8.06 -2.91 -0.02 3.00 16 37 H 0.16 3.69 8.06 -2.91 -0.02 3.67 16 38 H 0.12 5.54 5.72 -2.91 -0.02 5.52 16 39 H 0.27 16.71 8.31 -92.71 -0.77 15.94 16 40 H 0.12 1.94 4.81 -2.38 -0.01 1.93 16 41 H 0.08 1.80 7.56 -2.39 -0.02 1.78 16 42 H 0.07 0.71 7.98 -2.39 -0.02 0.69 16 43 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 44 H 0.08 0.67 5.13 -2.39 -0.01 0.66 16 45 H 0.02 0.67 7.99 -2.38 -0.02 0.65 16 46 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 47 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -94.01 367.65 7.27 -86.75 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: 0.98 Total: 26.81 kcal Atomic # 6 Polarization: -31.35 SS G_CDS: 5.54 Total: -25.81 kcal Atomic # 7 Polarization: -83.88 SS G_CDS: -1.49 Total: -85.36 kcal Atomic # 8 Polarization: -50.08 SS G_CDS: 0.21 Total: -49.87 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -94.01 7.27 -86.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294124056.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.648 kcal (2) G-P(sol) polarization free energy of solvation -94.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds