Wall clock time and date at job start Tue Mar 31 2020 12:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47115 * 2 1 4 4 C 1.52996 * 109.47479 * 120.00516 * 2 1 3 5 5 H 1.08997 * 109.47340 * 59.99414 * 4 2 1 6 6 C 1.55321 * 109.40697 * 180.02562 * 4 2 1 7 7 N 1.45120 * 109.25746 * 187.88273 * 6 4 2 8 8 C 1.34780 * 118.75505 * 90.85532 * 7 6 4 9 9 O 1.21582 * 120.00204 * 354.72497 * 8 7 6 10 10 C 1.47651 * 119.99691 * 174.73582 * 8 7 6 11 11 C 1.40011 * 119.89494 * 325.92176 * 10 8 7 12 12 C 1.36309 * 120.10734 * 179.97438 * 11 10 8 13 13 C 1.40885 * 119.89189 * 359.97438 * 12 11 10 14 14 C 1.41111 * 120.10193 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99918 * 330.77361 * 14 13 12 16 16 C 1.40224 * 120.00096 * 150.50918 * 14 13 12 17 17 N 1.30645 * 119.99775 * 349.70217 * 16 14 13 18 18 Si 1.86800 * 120.00281 * 169.70266 * 16 14 13 19 19 H 1.48510 * 109.46948 * 89.99886 * 18 16 14 20 20 H 1.48496 * 109.47359 * 209.99701 * 18 16 14 21 21 H 1.48498 * 109.47104 * 329.99960 * 18 16 14 22 22 C 1.40889 * 119.79365 * 0.25644 * 13 12 11 23 23 C 1.36320 * 119.88844 * 359.48119 * 22 13 12 24 24 C 1.47512 * 122.48347 * 270.56892 * 7 6 4 25 25 C 1.53566 * 111.02619 * 41.88657 * 24 7 6 26 26 C 1.51535 * 109.58295 * 39.97643 * 25 24 7 27 27 O 1.38022 * 109.46873 * 299.99695 * 4 2 1 28 28 H 1.09003 * 109.46761 * 299.99499 * 1 2 3 29 29 H 1.08994 * 109.47119 * 59.99652 * 1 2 3 30 30 H 1.08998 * 109.46650 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47100 * 240.00189 * 2 1 3 32 32 H 1.08994 * 109.47411 * 300.00169 * 3 2 1 33 33 H 1.09003 * 109.46897 * 60.00584 * 3 2 1 34 34 H 1.09004 * 109.46928 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.50964 * 67.99942 * 6 4 2 36 36 H 1.09009 * 109.69443 * 307.87484 * 6 4 2 37 37 H 1.08004 * 119.94378 * 359.95999 * 11 10 8 38 38 H 1.08005 * 120.05641 * 179.97438 * 12 11 10 39 39 H 0.97003 * 119.99509 * 179.97438 * 17 16 14 40 40 H 1.07996 * 120.05247 * 179.72460 * 22 13 12 41 41 H 1.07999 * 119.94556 * 180.25193 * 23 22 13 42 42 H 1.08998 * 109.16286 * 162.28789 * 24 7 6 43 43 H 1.09003 * 109.16695 * 281.53764 * 24 7 6 44 44 H 1.09006 * 109.45330 * 160.00975 * 25 24 7 45 45 H 1.08995 * 109.45336 * 279.93977 * 25 24 7 46 46 H 1.09000 * 109.58993 * 28.38251 * 26 25 24 47 47 H 1.09008 * 109.59037 * 148.67451 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 1.6767 -1.7490 1.2491 6 6 3.5933 -0.7198 1.2479 7 7 4.0736 -1.5609 2.3286 8 6 4.3051 -2.8654 2.0811 9 8 4.0213 -3.3384 0.9976 10 6 4.9033 -3.7201 3.1260 11 6 5.8431 -3.1826 4.0138 12 6 6.3977 -3.9676 4.9803 13 6 6.0234 -5.3217 5.0854 14 6 6.5952 -6.1385 6.0840 15 1 7.5926 -5.9333 6.4439 16 6 5.8662 -7.2132 6.6131 17 7 4.5961 -7.3408 6.3352 18 14 6.7112 -8.4625 7.7152 19 1 6.6120 -8.0217 9.1299 20 1 6.0521 -9.7843 7.5613 21 1 8.1412 -8.5746 7.3308 22 6 5.0810 -5.8593 4.1867 23 6 4.5278 -5.0651 3.2268 24 6 4.3238 -1.0407 3.6860 25 6 3.2108 -0.0758 4.1202 26 6 1.8688 -0.6084 3.6600 27 8 1.5801 -0.0707 2.3761 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 3.1300 1.4425 -0.0005 35 1 3.9565 0.2979 1.3908 36 1 3.9602 -1.1058 0.2967 37 1 6.1292 -2.1443 3.9324 38 1 7.1229 -3.5522 5.6645 39 1 4.0919 -8.0845 6.7009 40 1 4.7944 -6.8980 4.2607 41 1 3.8023 -5.4752 2.5399 42 1 4.3678 -1.8747 4.3864 43 1 5.2779 -0.5135 3.6971 44 1 3.2122 0.0148 5.2065 45 1 3.3850 0.9034 3.6744 46 1 1.9082 -1.6960 3.6005 47 1 1.0948 -0.3087 4.3666 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294268938.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:16 Heat of formation + Delta-G solvation = -64.025044 kcal Electronic energy + Delta-G solvation = -27436.866475 eV Core-core repulsion = 23777.170421 eV Total energy + Delta-G solvation = -3659.696054 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.42838 -38.60893 -37.08929 -35.74417 -34.79118 -33.84566 -31.81614 -30.35817 -29.75995 -28.16591 -27.09161 -26.26463 -25.73785 -23.39655 -21.92992 -21.00181 -20.87943 -20.00278 -18.79725 -17.54843 -16.87915 -16.56521 -16.09432 -15.75458 -15.41395 -14.81476 -14.52846 -14.32454 -14.08320 -13.70840 -13.51031 -13.13383 -13.08516 -12.91793 -12.78695 -12.42265 -12.28959 -12.09838 -11.90123 -11.81634 -11.56712 -11.41846 -11.25261 -11.18121 -11.02952 -10.90579 -10.85912 -10.71790 -10.47007 -10.28742 -10.01540 -9.57274 -9.41887 -9.40200 -8.99810 -8.21285 -7.71013 -7.48660 -6.95614 -4.61817 2.25111 2.90814 2.95672 2.97503 3.00977 3.41752 3.70409 3.73975 3.78538 4.51185 4.75430 4.83700 4.92974 5.03788 5.07499 5.18170 5.28433 5.39089 5.50577 5.55042 5.61128 5.63711 5.66236 5.79584 5.84018 5.86996 5.90074 5.95237 5.97245 6.07272 6.09354 6.11077 6.19087 6.22580 6.28118 6.39594 6.77841 6.83465 6.99124 7.01759 7.11184 7.42952 7.55551 7.67038 7.76730 7.85159 7.99331 8.08994 8.42564 8.64115 8.73616 8.92297 9.96431 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.026593 B = 0.003021 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.636913 B = 9266.331060 C = 9383.320876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.084 4.084 3 C -0.143 4.143 4 C 0.096 3.904 5 H 0.052 0.948 6 C 0.087 3.913 7 N -0.619 5.619 8 C 0.569 3.431 9 O -0.564 6.564 10 C -0.275 4.275 11 C -0.061 4.061 12 C -0.231 4.231 13 C 0.128 3.872 14 C -0.449 4.449 15 H 0.082 0.918 16 C 0.072 3.928 17 N -0.782 5.782 18 Si 0.915 3.085 19 H -0.267 1.267 20 H -0.274 1.274 21 H -0.259 1.259 22 C -0.171 4.171 23 C -0.043 4.043 24 C 0.100 3.900 25 C -0.166 4.166 26 C 0.076 3.924 27 O -0.384 6.384 28 H 0.062 0.938 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.081 0.919 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.285 0.715 40 H 0.122 0.878 41 H 0.095 0.905 42 H 0.108 0.892 43 H 0.060 0.940 44 H 0.084 0.916 45 H 0.073 0.927 46 H 0.056 0.944 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.719 12.572 -3.767 13.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.103 4.103 3 C -0.201 4.201 4 C 0.036 3.964 5 H 0.070 0.930 6 C -0.037 4.037 7 N -0.352 5.352 8 C 0.364 3.636 9 O -0.444 6.444 10 C -0.280 4.280 11 C -0.079 4.079 12 C -0.251 4.251 13 C 0.125 3.875 14 C -0.477 4.477 15 H 0.101 0.899 16 C -0.147 4.147 17 N -0.406 5.406 18 Si 0.739 3.261 19 H -0.193 1.193 20 H -0.199 1.199 21 H -0.183 1.183 22 C -0.191 4.191 23 C -0.062 4.062 24 C -0.022 4.022 25 C -0.204 4.204 26 C 0.000 4.000 27 O -0.303 6.303 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.099 0.901 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.096 0.904 40 H 0.140 0.860 41 H 0.113 0.887 42 H 0.126 0.874 43 H 0.078 0.922 44 H 0.102 0.898 45 H 0.092 0.908 46 H 0.074 0.926 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.165 12.343 -4.291 14.051 hybrid contribution 0.551 -0.798 0.703 1.198 sum -4.614 11.545 -3.588 12.940 Atomic orbital electron populations 1.21744 0.94693 1.01688 1.01780 1.21123 0.96502 0.96738 0.95926 1.21800 1.00761 0.95681 1.01815 1.22080 0.93004 0.95680 0.85617 0.92977 1.22343 0.94719 0.94872 0.91797 1.47803 1.67555 1.09513 1.10363 1.18876 0.76394 0.80742 0.87607 1.90644 1.54387 1.73324 1.26052 1.18898 1.09859 0.95247 1.03976 1.20653 0.95653 0.97638 0.94005 1.20750 1.07205 0.94416 1.02713 1.17785 0.89290 0.90584 0.89811 1.19777 1.01718 1.09037 1.17164 0.89943 1.26051 0.94506 0.97722 0.96453 1.69711 1.07373 1.27833 1.35721 0.86196 0.80640 0.79265 0.80047 1.19251 1.19890 1.18286 1.21043 1.02232 0.99899 0.95899 1.20427 0.97391 0.91896 0.96536 1.22432 0.96840 0.98872 0.84088 1.22499 0.95962 0.99958 1.01991 1.22128 0.95864 0.98458 0.83578 1.86160 1.77095 1.54102 1.12916 0.91866 0.92987 0.92981 0.90083 0.93097 0.91818 0.92799 0.90630 0.89734 0.88267 0.88432 0.90371 0.86027 0.88703 0.87373 0.92209 0.89770 0.90816 0.92605 0.89496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.04 37.16 0.34 -1.17 16 2 C -0.08 -0.96 2.81 -90.62 -0.26 -1.22 16 3 C -0.14 -1.42 8.71 37.16 0.32 -1.10 16 4 C 0.10 1.34 2.39 -25.50 -0.06 1.28 16 5 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 6 C 0.09 1.28 4.24 -3.55 -0.02 1.26 16 7 N -0.62 -10.43 2.18 -173.32 -0.38 -10.81 16 8 C 0.57 12.00 7.32 -12.42 -0.09 11.91 16 9 O -0.56 -13.36 16.27 5.29 0.09 -13.27 16 10 C -0.28 -6.16 5.22 -104.73 -0.55 -6.71 16 11 C -0.06 -1.26 7.29 -39.61 -0.29 -1.55 16 12 C -0.23 -5.22 9.73 -39.27 -0.38 -5.60 16 13 C 0.13 3.22 5.54 -106.80 -0.59 2.62 16 14 C -0.45 -11.07 9.05 -37.75 -0.34 -11.41 16 15 H 0.08 1.93 7.87 -52.48 -0.41 1.52 16 16 C 0.07 1.70 5.25 -17.31 -0.09 1.61 16 17 N -0.78 -19.02 10.87 55.56 0.60 -18.42 16 18 Si 0.91 17.47 29.57 -169.99 -5.03 12.44 16 19 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 20 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 21 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 22 C -0.17 -4.32 8.59 -39.27 -0.34 -4.66 16 23 C -0.04 -1.04 9.53 -39.61 -0.38 -1.41 16 24 C 0.10 1.44 4.44 -3.19 -0.01 1.43 16 25 C -0.17 -1.96 5.79 -27.18 -0.16 -2.12 16 26 C 0.08 0.99 6.38 36.42 0.23 1.22 16 27 O -0.38 -5.20 8.11 -26.56 -0.22 -5.41 16 28 H 0.06 0.70 7.69 -51.93 -0.40 0.30 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.67 7.69 -51.93 -0.40 0.27 16 34 H 0.05 0.52 6.61 -51.93 -0.34 0.18 16 35 H 0.08 0.98 6.89 -51.93 -0.36 0.62 16 36 H 0.08 1.34 7.36 -51.92 -0.38 0.96 16 37 H 0.10 1.77 5.45 -52.48 -0.29 1.48 16 38 H 0.10 2.03 8.06 -52.48 -0.42 1.60 16 39 H 0.29 6.29 8.29 -40.82 -0.34 5.95 16 40 H 0.12 3.16 6.27 -52.49 -0.33 2.83 16 41 H 0.09 2.24 7.97 -52.49 -0.42 1.82 16 42 H 0.11 1.78 4.93 -51.93 -0.26 1.53 16 43 H 0.06 0.78 7.35 -51.93 -0.38 0.40 16 44 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.07 0.83 8.01 -51.93 -0.42 0.41 16 46 H 0.06 0.86 7.40 -51.93 -0.38 0.48 16 47 H 0.09 0.96 8.14 -51.92 -0.42 0.54 16 LS Contribution 364.51 15.07 5.49 5.49 Total: -1.00 -27.64 364.51 -9.38 -37.01 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -7.28 Total: 8.58 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: -2.66 Total: -15.62 kcal Atomic # 7 Polarization: -29.45 SS G_CDS: 0.23 Total: -29.23 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.13 Total: -18.68 kcal Atomic # 14 Polarization: 17.47 SS G_CDS: -5.03 Total: 12.44 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -27.64 -9.38 -37.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294268938.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.010 kcal (2) G-P(sol) polarization free energy of solvation -27.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds