Wall clock time and date at job start Tue Mar 31 2020 12:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47115 * 2 1 4 4 C 1.52996 * 109.47479 * 120.00516 * 2 1 3 5 5 H 1.08997 * 109.47340 * 59.99414 * 4 2 1 6 6 C 1.55321 * 109.40697 * 180.02562 * 4 2 1 7 7 N 1.45120 * 109.25746 * 187.88273 * 6 4 2 8 8 C 1.34780 * 118.75505 * 90.85532 * 7 6 4 9 9 O 1.21582 * 120.00204 * 354.72497 * 8 7 6 10 10 C 1.47651 * 119.99691 * 174.73582 * 8 7 6 11 11 C 1.40011 * 119.89494 * 325.92176 * 10 8 7 12 12 C 1.36309 * 120.10734 * 179.97438 * 11 10 8 13 13 C 1.40885 * 119.89189 * 359.97438 * 12 11 10 14 14 C 1.41111 * 120.10193 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99918 * 330.77361 * 14 13 12 16 16 C 1.40224 * 120.00096 * 150.50918 * 14 13 12 17 17 N 1.30645 * 119.99775 * 349.70217 * 16 14 13 18 18 Si 1.86800 * 120.00281 * 169.70266 * 16 14 13 19 19 H 1.48510 * 109.46948 * 89.99886 * 18 16 14 20 20 H 1.48496 * 109.47359 * 209.99701 * 18 16 14 21 21 H 1.48498 * 109.47104 * 329.99960 * 18 16 14 22 22 C 1.40889 * 119.79365 * 0.25644 * 13 12 11 23 23 C 1.36320 * 119.88844 * 359.48119 * 22 13 12 24 24 C 1.47512 * 122.48347 * 270.56892 * 7 6 4 25 25 C 1.53566 * 111.02619 * 41.88657 * 24 7 6 26 26 C 1.51535 * 109.58295 * 39.97643 * 25 24 7 27 27 O 1.38022 * 109.46873 * 299.99695 * 4 2 1 28 28 H 1.09003 * 109.46761 * 299.99499 * 1 2 3 29 29 H 1.08994 * 109.47119 * 59.99652 * 1 2 3 30 30 H 1.08998 * 109.46650 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47100 * 240.00189 * 2 1 3 32 32 H 1.08994 * 109.47411 * 300.00169 * 3 2 1 33 33 H 1.09003 * 109.46897 * 60.00584 * 3 2 1 34 34 H 1.09004 * 109.46928 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.50964 * 67.99942 * 6 4 2 36 36 H 1.09009 * 109.69443 * 307.87484 * 6 4 2 37 37 H 1.08004 * 119.94378 * 359.95999 * 11 10 8 38 38 H 1.08005 * 120.05641 * 179.97438 * 12 11 10 39 39 H 0.97003 * 119.99509 * 179.97438 * 17 16 14 40 40 H 1.07996 * 120.05247 * 179.72460 * 22 13 12 41 41 H 1.07999 * 119.94556 * 180.25193 * 23 22 13 42 42 H 1.08998 * 109.16286 * 162.28789 * 24 7 6 43 43 H 1.09003 * 109.16695 * 281.53764 * 24 7 6 44 44 H 1.09006 * 109.45330 * 160.00975 * 25 24 7 45 45 H 1.08995 * 109.45336 * 279.93977 * 25 24 7 46 46 H 1.09000 * 109.58993 * 28.38251 * 26 25 24 47 47 H 1.09008 * 109.59037 * 148.67451 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 1.6767 -1.7490 1.2491 6 6 3.5933 -0.7198 1.2479 7 7 4.0736 -1.5609 2.3286 8 6 4.3051 -2.8654 2.0811 9 8 4.0213 -3.3384 0.9976 10 6 4.9033 -3.7201 3.1260 11 6 5.8431 -3.1826 4.0138 12 6 6.3977 -3.9676 4.9803 13 6 6.0234 -5.3217 5.0854 14 6 6.5952 -6.1385 6.0840 15 1 7.5926 -5.9333 6.4439 16 6 5.8662 -7.2132 6.6131 17 7 4.5961 -7.3408 6.3352 18 14 6.7112 -8.4625 7.7152 19 1 6.6120 -8.0217 9.1299 20 1 6.0521 -9.7843 7.5613 21 1 8.1412 -8.5746 7.3308 22 6 5.0810 -5.8593 4.1867 23 6 4.5278 -5.0651 3.2268 24 6 4.3238 -1.0407 3.6860 25 6 3.2108 -0.0758 4.1202 26 6 1.8688 -0.6084 3.6600 27 8 1.5801 -0.0707 2.3761 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 3.1300 1.4425 -0.0005 35 1 3.9565 0.2979 1.3908 36 1 3.9602 -1.1058 0.2967 37 1 6.1292 -2.1443 3.9324 38 1 7.1229 -3.5522 5.6645 39 1 4.0919 -8.0845 6.7009 40 1 4.7944 -6.8980 4.2607 41 1 3.8023 -5.4752 2.5399 42 1 4.3678 -1.8747 4.3864 43 1 5.2779 -0.5135 3.6971 44 1 3.2122 0.0148 5.2065 45 1 3.3850 0.9034 3.6744 46 1 1.9082 -1.6960 3.6005 47 1 1.0948 -0.3087 4.3666 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294268938.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:15 Heat of formation + Delta-G solvation = -77.074163 kcal Electronic energy + Delta-G solvation = -27437.432327 eV Core-core repulsion = 23777.170421 eV Total energy + Delta-G solvation = -3660.261907 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.77889 -40.05489 -38.82767 -36.92794 -36.00647 -35.61273 -32.91899 -32.10985 -31.56573 -29.50591 -27.97738 -27.51709 -27.31210 -24.76622 -23.36373 -22.73150 -22.29436 -20.99779 -20.32452 -19.34713 -18.33485 -17.73439 -17.42420 -17.17654 -16.91076 -16.20334 -15.94067 -15.86378 -15.17850 -15.01206 -14.85162 -14.66643 -14.49414 -14.16933 -14.08493 -13.85068 -13.74814 -13.38908 -13.34378 -13.08020 -12.82213 -12.80958 -12.65963 -12.58803 -12.37308 -12.19087 -11.86685 -11.79451 -11.75829 -11.65906 -11.40921 -11.32830 -11.13721 -10.69186 -10.56748 -9.65116 -9.49262 -9.30687 -8.72200 -6.49267 0.47048 1.10852 1.38520 1.42078 1.53531 1.94055 2.11435 2.18055 2.67320 2.73877 3.63184 3.68544 3.75689 3.82965 3.94706 4.03377 4.11312 4.21683 4.31841 4.34730 4.35774 4.44225 4.53032 4.57773 4.68506 4.80653 4.81790 4.87691 4.92228 4.95820 5.00806 5.02281 5.07841 5.08645 5.13097 5.17351 5.23085 5.25458 5.42889 5.53692 5.58540 5.68700 5.75345 5.95061 6.00547 6.19979 6.38718 6.56577 6.63804 6.79132 6.88612 7.29036 8.22427 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.026593 B = 0.003021 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.636913 B = 9266.331060 C = 9383.320876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.084 4.084 3 C -0.137 4.137 4 C 0.103 3.897 5 H 0.013 0.987 6 C 0.086 3.914 7 N -0.608 5.608 8 C 0.565 3.435 9 O -0.600 6.600 10 C -0.282 4.282 11 C -0.044 4.044 12 C -0.238 4.238 13 C 0.102 3.898 14 C -0.478 4.478 15 H 0.089 0.911 16 C 0.032 3.968 17 N -0.815 5.815 18 Si 0.988 3.012 19 H -0.258 1.258 20 H -0.270 1.270 21 H -0.256 1.256 22 C -0.191 4.191 23 C -0.057 4.057 24 C 0.092 3.908 25 C -0.154 4.154 26 C 0.070 3.930 27 O -0.380 6.380 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.039 0.961 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.105 0.895 36 H 0.071 0.929 37 H 0.137 0.863 38 H 0.118 0.882 39 H 0.292 0.708 40 H 0.103 0.897 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.109 0.891 45 H 0.091 0.909 46 H 0.022 0.978 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.054 15.323 -2.878 16.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.103 4.103 3 C -0.194 4.194 4 C 0.043 3.957 5 H 0.031 0.969 6 C -0.037 4.037 7 N -0.339 5.339 8 C 0.359 3.641 9 O -0.483 6.483 10 C -0.286 4.286 11 C -0.062 4.062 12 C -0.258 4.258 13 C 0.099 3.901 14 C -0.506 4.506 15 H 0.108 0.892 16 C -0.185 4.185 17 N -0.440 5.440 18 Si 0.808 3.192 19 H -0.183 1.183 20 H -0.194 1.194 21 H -0.179 1.179 22 C -0.211 4.211 23 C -0.076 4.076 24 C -0.029 4.029 25 C -0.192 4.192 26 C -0.006 4.006 27 O -0.299 6.299 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.058 0.942 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.123 0.877 36 H 0.089 0.911 37 H 0.154 0.846 38 H 0.136 0.864 39 H 0.103 0.897 40 H 0.121 0.879 41 H 0.103 0.897 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.127 0.873 45 H 0.110 0.890 46 H 0.041 0.959 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.510 15.148 -3.390 16.164 hybrid contribution 0.263 -1.569 0.379 1.635 sum -4.247 13.579 -3.011 14.542 Atomic orbital electron populations 1.21716 0.94054 1.01176 1.02604 1.21161 0.97077 0.97734 0.94335 1.21751 1.00925 0.94123 1.02592 1.21977 0.92433 0.94217 0.87087 0.96922 1.22524 0.95197 0.95552 0.90472 1.47824 1.65960 1.08186 1.11971 1.18751 0.76486 0.82198 0.86689 1.90619 1.55967 1.74454 1.27287 1.19136 1.10082 0.94813 1.04561 1.20918 0.93898 0.99056 0.92368 1.21003 1.07588 0.93627 1.03550 1.18127 0.89698 0.92094 0.90154 1.20078 1.02319 1.10387 1.17799 0.89249 1.26943 0.94855 0.99106 0.97560 1.69781 1.08783 1.28693 1.36736 0.85097 0.79378 0.76520 0.78169 1.18260 1.19409 1.17930 1.20937 1.03695 0.99337 0.97105 1.20478 0.97589 0.93133 0.96415 1.22626 0.99411 0.98882 0.82012 1.22448 0.93651 0.99545 1.03573 1.22283 0.97801 0.96601 0.83908 1.86180 1.77169 1.53603 1.12929 0.92155 0.90982 0.94211 0.90218 0.91395 0.91974 0.92443 0.87659 0.91088 0.84559 0.86432 0.89711 0.87886 0.89686 0.89515 0.89617 0.87314 0.89041 0.95917 0.87139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.04 71.98 0.65 -2.11 16 2 C -0.08 -1.82 2.81 -10.79 -0.03 -1.85 16 3 C -0.14 -2.32 8.71 71.98 0.63 -1.69 16 4 C 0.10 2.83 2.39 31.39 0.08 2.91 16 5 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 6 C 0.09 2.41 4.24 87.44 0.37 2.78 16 7 N -0.61 -19.91 2.18 -820.51 -1.79 -21.70 16 8 C 0.56 24.22 7.32 86.73 0.64 24.85 16 9 O -0.60 -29.51 16.27 -3.97 -0.06 -29.57 16 10 C -0.28 -12.85 5.22 -19.93 -0.10 -12.95 16 11 C -0.04 -1.79 7.29 22.25 0.16 -1.63 16 12 C -0.24 -10.66 9.73 22.47 0.22 -10.45 16 13 C 0.10 5.26 5.54 -21.28 -0.12 5.14 16 14 C -0.48 -23.98 9.05 23.46 0.21 -23.77 16 15 H 0.09 4.21 7.87 -2.91 -0.02 4.18 16 16 C 0.03 1.53 5.25 85.35 0.45 1.98 16 17 N -0.82 -40.90 10.87 21.87 0.24 -40.67 16 18 Si 0.99 35.73 29.57 68.60 2.03 37.76 16 19 H -0.26 -8.90 7.11 99.48 0.71 -8.19 16 20 H -0.27 -9.44 7.11 99.48 0.71 -8.74 16 21 H -0.26 -9.02 7.11 99.48 0.71 -8.32 16 22 C -0.19 -10.16 8.59 22.47 0.19 -9.97 16 23 C -0.06 -2.88 9.53 22.25 0.21 -2.67 16 24 C 0.09 2.41 4.44 86.38 0.38 2.80 16 25 C -0.15 -3.12 5.79 30.30 0.18 -2.94 16 26 C 0.07 1.71 6.38 71.50 0.46 2.16 16 27 O -0.38 -9.67 8.11 -117.96 -0.96 -10.63 16 28 H 0.06 1.24 7.69 -2.39 -0.02 1.22 16 29 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.08 1.74 8.14 -2.39 -0.02 1.73 16 32 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.06 1.09 7.69 -2.39 -0.02 1.07 16 34 H 0.06 0.93 6.61 -2.39 -0.02 0.91 16 35 H 0.11 2.37 6.89 -2.39 -0.02 2.35 16 36 H 0.07 2.23 7.36 -2.38 -0.02 2.21 16 37 H 0.14 4.46 5.45 -2.91 -0.02 4.45 16 38 H 0.12 4.71 8.06 -2.91 -0.02 4.68 16 39 H 0.29 13.23 8.29 -92.71 -0.77 12.47 16 40 H 0.10 5.74 6.27 -2.91 -0.02 5.72 16 41 H 0.08 4.34 7.97 -2.91 -0.02 4.32 16 42 H 0.09 2.71 4.93 -2.39 -0.01 2.70 16 43 H 0.09 1.87 7.35 -2.39 -0.02 1.85 16 44 H 0.11 1.75 8.14 -2.38 -0.02 1.73 16 45 H 0.09 1.61 8.01 -2.39 -0.02 1.59 16 46 H 0.02 0.70 7.40 -2.39 -0.02 0.68 16 47 H 0.11 2.17 8.14 -2.38 -0.02 2.15 16 Total: -1.00 -63.09 364.51 4.99 -58.10 By element: Atomic # 1 Polarization: 33.16 SS G_CDS: 0.96 Total: 34.12 kcal Atomic # 6 Polarization: -31.98 SS G_CDS: 4.57 Total: -27.41 kcal Atomic # 7 Polarization: -60.81 SS G_CDS: -1.55 Total: -62.36 kcal Atomic # 8 Polarization: -39.18 SS G_CDS: -1.02 Total: -40.20 kcal Atomic # 14 Polarization: 35.73 SS G_CDS: 2.03 Total: 37.76 kcal Total: -63.09 4.99 -58.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294268938.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.971 kcal (2) G-P(sol) polarization free energy of solvation -63.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds