Wall clock time and date at job start Tue Mar 31 2020 12:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47344 * 2 1 4 4 C 1.53000 * 109.46736 * 120.00200 * 2 1 3 5 5 H 1.09008 * 109.46701 * 299.98952 * 4 2 1 6 6 C 1.54814 * 109.46859 * 180.02562 * 4 2 1 7 7 N 1.45116 * 109.52878 * 172.10558 * 6 4 2 8 8 C 1.34780 * 118.75303 * 269.28656 * 7 6 4 9 9 O 1.21543 * 120.00050 * 5.15809 * 8 7 6 10 10 C 1.47891 * 119.99713 * 185.15850 * 8 7 6 11 11 C 1.39922 * 120.02067 * 213.96602 * 10 8 7 12 12 C 1.38332 * 120.35698 * 180.28066 * 11 10 8 13 13 C 1.37759 * 120.40759 * 359.47480 * 12 11 10 14 14 C 1.40746 * 120.03993 * 0.51905 * 13 12 11 15 15 C 1.41443 * 120.17533 * 179.71827 * 14 13 12 16 16 H 1.07998 * 119.99464 * 204.62937 * 15 14 13 17 17 C 1.39935 * 119.99966 * 24.62769 * 15 14 13 18 18 N 1.30831 * 119.99944 * 17.41227 * 17 15 14 19 19 Si 1.86793 * 119.99918 * 197.41561 * 17 15 14 20 20 H 1.48497 * 109.47553 * 59.99950 * 19 17 15 21 21 H 1.48498 * 109.47167 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47115 * 299.99806 * 19 17 15 23 23 C 1.38991 * 120.02890 * 33.98316 * 10 8 7 24 24 C 1.47504 * 122.48732 * 89.57016 * 7 6 4 25 25 C 1.53950 * 110.82033 * 317.97020 * 24 7 6 26 26 C 1.51532 * 109.72552 * 320.30677 * 25 24 7 27 27 O 1.38013 * 109.47547 * 59.98279 * 4 2 1 28 28 H 1.08994 * 109.47533 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46523 * 300.00185 * 1 2 3 30 30 H 1.09001 * 109.46690 * 59.99556 * 1 2 3 31 31 H 1.09003 * 109.47228 * 239.99599 * 2 1 3 32 32 H 1.09004 * 109.47329 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47590 * 299.99893 * 3 2 1 34 34 H 1.09004 * 109.47045 * 60.00123 * 3 2 1 35 35 H 1.08997 * 109.45667 * 52.08146 * 6 4 2 36 36 H 1.09002 * 109.44736 * 292.11695 * 6 4 2 37 37 H 1.07997 * 119.82617 * 359.97438 * 11 10 8 38 38 H 1.08000 * 119.79405 * 179.74367 * 12 11 10 39 39 H 1.08003 * 119.97922 * 180.23737 * 13 12 11 40 40 H 0.96996 * 119.99808 * 180.02562 * 18 17 15 41 41 H 1.08005 * 120.20151 * 359.97438 * 23 10 8 42 42 H 1.08993 * 109.16856 * 78.49125 * 24 7 6 43 43 H 1.09003 * 109.16388 * 197.69361 * 24 7 6 44 44 H 1.08999 * 109.45648 * 200.17823 * 25 24 7 45 45 H 1.08993 * 109.27600 * 80.32583 * 25 24 7 46 46 H 1.08995 * 109.59186 * 331.51201 * 26 25 24 47 47 H 1.09004 * 109.70923 * 211.14971 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6767 -0.2073 2.1392 6 6 3.5881 -0.7208 1.2496 7 7 4.0731 -1.2355 2.5168 8 6 4.3031 -0.3690 3.5232 9 8 4.0162 0.8048 3.3920 10 6 4.9047 -0.8466 4.7870 11 6 4.5337 -0.2628 6.0033 12 6 5.0962 -0.7001 7.1890 13 6 6.0198 -1.7222 7.1873 14 6 6.4052 -2.3216 5.9736 15 6 7.3577 -3.3672 5.9679 16 1 7.9444 -3.5584 5.0816 17 6 7.5398 -4.1540 7.1108 18 7 6.6283 -4.1653 8.0492 19 14 9.0844 -5.1879 7.2965 20 1 10.2774 -4.3038 7.2757 21 1 9.0360 -5.9229 8.5859 22 1 9.1680 -6.1585 6.1757 23 6 5.8392 -1.8752 4.7675 24 6 4.3296 -2.6703 2.7430 25 6 3.2116 -3.5301 2.1258 26 6 1.8692 -2.8659 2.3564 27 8 1.5796 -2.0224 1.2495 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 3.9508 0.2973 1.1083 36 1 3.9514 -1.3516 0.4383 37 1 3.8079 0.5368 6.0161 38 1 4.8063 -0.2403 8.1222 39 1 6.4518 -2.0608 8.1175 40 1 6.7547 -4.7103 8.8415 41 1 6.1284 -2.3288 3.8309 42 1 5.2839 -2.9390 2.2903 43 1 4.3769 -2.8606 3.8153 44 1 3.2134 -4.5161 2.5904 45 1 3.3865 -3.6330 1.0549 46 1 1.9078 -2.2707 3.2687 47 1 1.0938 -3.6264 2.4488 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294347059.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:21 Heat of formation + Delta-G solvation = -62.368480 kcal Electronic energy + Delta-G solvation = -27643.613070 eV Core-core repulsion = 23983.988850 eV Total energy + Delta-G solvation = -3659.624220 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.48873 -38.63794 -37.06777 -35.80378 -34.95177 -33.74822 -31.85323 -30.34367 -29.97649 -27.97597 -27.01998 -26.16283 -25.34488 -23.74668 -21.88348 -21.13628 -20.72595 -20.26265 -19.08260 -17.49892 -16.65458 -16.36102 -16.14189 -15.81941 -15.41483 -14.82004 -14.66719 -14.37495 -14.14480 -13.79641 -13.52149 -13.15956 -13.13320 -12.84614 -12.68796 -12.50160 -12.29777 -12.20471 -12.04175 -11.74480 -11.39839 -11.26245 -11.24193 -11.14697 -11.03606 -10.84355 -10.77193 -10.66026 -10.53382 -10.33798 -10.18725 -9.62567 -9.43938 -9.28342 -9.08002 -8.26898 -7.63666 -7.57412 -6.88398 -4.50541 2.21273 2.68220 3.00087 3.01582 3.09956 3.33161 3.64557 3.68539 3.84353 4.51391 4.72768 4.85783 4.93651 5.06287 5.09230 5.14315 5.30046 5.37757 5.50586 5.51253 5.55642 5.59864 5.63667 5.78834 5.82956 5.83977 5.87737 5.97688 6.06957 6.08430 6.10922 6.14927 6.22628 6.31958 6.32381 6.36152 6.70533 6.85616 6.88766 6.99679 7.10944 7.29336 7.55798 7.67082 7.77057 7.83889 7.91145 8.04143 8.44201 8.70939 8.73209 8.77461 10.06300 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021057 B = 0.003514 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.374769 B = 7967.029756 C = 8578.722987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.082 4.082 3 C -0.148 4.148 4 C 0.096 3.904 5 H 0.052 0.948 6 C 0.081 3.919 7 N -0.612 5.612 8 C 0.561 3.439 9 O -0.552 6.552 10 C -0.115 4.115 11 C -0.180 4.180 12 C -0.114 4.114 13 C -0.139 4.139 14 C 0.102 3.898 15 C -0.463 4.463 16 H 0.079 0.921 17 C 0.077 3.923 18 N -0.794 5.794 19 Si 0.909 3.091 20 H -0.263 1.263 21 H -0.278 1.278 22 H -0.265 1.265 23 C -0.198 4.198 24 C 0.094 3.906 25 C -0.166 4.166 26 C 0.077 3.923 27 O -0.387 6.387 28 H 0.062 0.938 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.122 0.878 40 H 0.283 0.717 41 H 0.107 0.893 42 H 0.066 0.934 43 H 0.116 0.884 44 H 0.086 0.914 45 H 0.073 0.927 46 H 0.054 0.946 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.080 0.695 -10.753 12.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.101 4.101 3 C -0.205 4.205 4 C 0.036 3.964 5 H 0.070 0.930 6 C -0.043 4.043 7 N -0.345 5.345 8 C 0.353 3.647 9 O -0.431 6.431 10 C -0.118 4.118 11 C -0.200 4.200 12 C -0.132 4.132 13 C -0.158 4.158 14 C 0.099 3.901 15 C -0.493 4.493 16 H 0.097 0.903 17 C -0.141 4.141 18 N -0.419 5.419 19 Si 0.733 3.267 20 H -0.188 1.188 21 H -0.203 1.203 22 H -0.189 1.189 23 C -0.218 4.218 24 C -0.028 4.028 25 C -0.204 4.204 26 C 0.001 3.999 27 O -0.306 6.306 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.109 0.891 36 H 0.094 0.906 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.140 0.860 40 H 0.094 0.906 41 H 0.125 0.875 42 H 0.084 0.916 43 H 0.133 0.867 44 H 0.105 0.895 45 H 0.092 0.908 46 H 0.073 0.927 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.379 1.110 -10.753 13.089 hybrid contribution 0.964 -0.574 0.462 1.213 sum -6.415 0.535 -10.292 12.139 Atomic orbital electron populations 1.21742 0.94631 1.02233 1.01238 1.21035 0.96500 0.95659 0.96942 1.21880 1.01508 0.95047 1.02047 1.22018 0.92904 0.83268 0.98214 0.92966 1.22361 0.94892 1.01122 0.85896 1.47794 1.66490 1.07728 1.12440 1.19090 0.76617 0.85108 0.83866 1.90658 1.53016 1.17431 1.81955 1.19284 1.01276 0.99738 0.91531 1.20385 1.05275 1.02915 0.91434 1.20678 0.98520 0.98034 0.95984 1.21558 0.99310 0.95683 0.99275 1.17526 0.90649 0.91326 0.90569 1.19511 1.18289 1.12585 0.98896 0.90329 1.25886 0.96790 0.96499 0.94918 1.69786 1.31239 1.33088 1.07793 0.86357 0.82157 0.79808 0.78392 1.18804 1.20307 1.18944 1.21437 1.01545 1.00492 0.98332 1.22685 0.97036 0.78712 1.04339 1.22556 0.95658 0.99972 1.02234 1.22141 0.96055 0.92729 0.89004 1.86164 1.77085 1.22957 1.44419 0.91907 0.92965 0.92935 0.90610 0.92094 0.92361 0.92191 0.89100 0.90606 0.88551 0.88658 0.85984 0.90645 0.87526 0.91595 0.86654 0.89502 0.90820 0.92746 0.89375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.04 37.16 0.34 -1.14 16 2 C -0.08 -0.94 2.72 -90.62 -0.25 -1.18 16 3 C -0.15 -1.60 8.86 37.15 0.33 -1.27 16 4 C 0.10 1.34 2.22 -25.77 -0.06 1.28 16 5 H 0.05 0.86 8.14 -51.92 -0.42 0.44 16 6 C 0.08 1.20 4.65 -3.83 -0.02 1.18 16 7 N -0.61 -10.43 2.18 -173.34 -0.38 -10.81 16 8 C 0.56 11.65 7.34 -12.31 -0.09 11.56 16 9 O -0.55 -12.54 16.27 5.33 0.09 -12.46 16 10 C -0.12 -2.57 5.21 -105.04 -0.55 -3.12 16 11 C -0.18 -4.09 9.61 -38.92 -0.37 -4.46 16 12 C -0.11 -2.58 10.01 -39.72 -0.40 -2.98 16 13 C -0.14 -3.40 8.69 -38.81 -0.34 -3.74 16 14 C 0.10 2.51 5.57 -106.87 -0.60 1.92 16 15 C -0.46 -11.37 9.05 -37.73 -0.34 -11.71 16 16 H 0.08 1.85 7.90 -52.49 -0.41 1.43 16 17 C 0.08 1.81 5.14 -17.34 -0.09 1.72 16 18 N -0.79 -19.20 10.94 55.55 0.61 -18.59 16 19 Si 0.91 17.61 29.59 -169.99 -5.03 12.58 16 20 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 21 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 22 H -0.26 -5.06 7.11 56.52 0.40 -4.65 16 23 C -0.20 -4.46 7.11 -38.45 -0.27 -4.73 16 24 C 0.09 1.46 4.49 -3.00 -0.01 1.45 16 25 C -0.17 -2.11 5.79 -26.98 -0.16 -2.26 16 26 C 0.08 1.02 6.37 36.41 0.23 1.25 16 27 O -0.39 -5.38 8.79 -26.53 -0.23 -5.61 16 28 H 0.06 0.68 7.69 -51.93 -0.40 0.28 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.69 6.26 -51.93 -0.33 0.36 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.09 1.41 5.29 -51.93 -0.27 1.13 16 36 H 0.08 1.00 8.11 -51.93 -0.42 0.58 16 37 H 0.10 2.12 7.97 -52.49 -0.42 1.70 16 38 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 39 H 0.12 3.07 6.14 -52.48 -0.32 2.75 16 40 H 0.28 6.26 8.30 -40.82 -0.34 5.92 16 41 H 0.11 2.21 5.45 -52.48 -0.29 1.92 16 42 H 0.07 0.98 7.37 -51.93 -0.38 0.59 16 43 H 0.12 2.07 4.92 -51.93 -0.26 1.82 16 44 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.07 0.89 8.01 -51.93 -0.42 0.47 16 46 H 0.05 0.83 7.41 -51.93 -0.38 0.45 16 47 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 365.00 15.07 5.50 5.50 Total: -1.00 -27.13 365.00 -9.33 -36.46 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -7.24 Total: 9.18 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: -2.64 Total: -16.25 kcal Atomic # 7 Polarization: -29.63 SS G_CDS: 0.23 Total: -29.40 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -0.15 Total: -18.07 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -5.03 Total: 12.58 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -27.13 -9.33 -36.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294347059.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.911 kcal (2) G-P(sol) polarization free energy of solvation -27.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds