Wall clock time and date at job start Tue Mar 31 2020 12:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47344 * 2 1 4 4 C 1.53000 * 109.46736 * 120.00200 * 2 1 3 5 5 H 1.09008 * 109.46701 * 299.98952 * 4 2 1 6 6 C 1.54814 * 109.46859 * 180.02562 * 4 2 1 7 7 N 1.45116 * 109.52878 * 172.10558 * 6 4 2 8 8 C 1.34780 * 118.75303 * 269.28656 * 7 6 4 9 9 O 1.21543 * 120.00050 * 5.15809 * 8 7 6 10 10 C 1.47891 * 119.99713 * 185.15850 * 8 7 6 11 11 C 1.39922 * 120.02067 * 213.96602 * 10 8 7 12 12 C 1.38332 * 120.35698 * 180.28066 * 11 10 8 13 13 C 1.37759 * 120.40759 * 359.47480 * 12 11 10 14 14 C 1.40746 * 120.03993 * 0.51905 * 13 12 11 15 15 C 1.41443 * 120.17533 * 179.71827 * 14 13 12 16 16 H 1.07998 * 119.99464 * 204.62937 * 15 14 13 17 17 C 1.39935 * 119.99966 * 24.62769 * 15 14 13 18 18 N 1.30831 * 119.99944 * 17.41227 * 17 15 14 19 19 Si 1.86793 * 119.99918 * 197.41561 * 17 15 14 20 20 H 1.48497 * 109.47553 * 59.99950 * 19 17 15 21 21 H 1.48498 * 109.47167 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47115 * 299.99806 * 19 17 15 23 23 C 1.38991 * 120.02890 * 33.98316 * 10 8 7 24 24 C 1.47504 * 122.48732 * 89.57016 * 7 6 4 25 25 C 1.53950 * 110.82033 * 317.97020 * 24 7 6 26 26 C 1.51532 * 109.72552 * 320.30677 * 25 24 7 27 27 O 1.38013 * 109.47547 * 59.98279 * 4 2 1 28 28 H 1.08994 * 109.47533 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46523 * 300.00185 * 1 2 3 30 30 H 1.09001 * 109.46690 * 59.99556 * 1 2 3 31 31 H 1.09003 * 109.47228 * 239.99599 * 2 1 3 32 32 H 1.09004 * 109.47329 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47590 * 299.99893 * 3 2 1 34 34 H 1.09004 * 109.47045 * 60.00123 * 3 2 1 35 35 H 1.08997 * 109.45667 * 52.08146 * 6 4 2 36 36 H 1.09002 * 109.44736 * 292.11695 * 6 4 2 37 37 H 1.07997 * 119.82617 * 359.97438 * 11 10 8 38 38 H 1.08000 * 119.79405 * 179.74367 * 12 11 10 39 39 H 1.08003 * 119.97922 * 180.23737 * 13 12 11 40 40 H 0.96996 * 119.99808 * 180.02562 * 18 17 15 41 41 H 1.08005 * 120.20151 * 359.97438 * 23 10 8 42 42 H 1.08993 * 109.16856 * 78.49125 * 24 7 6 43 43 H 1.09003 * 109.16388 * 197.69361 * 24 7 6 44 44 H 1.08999 * 109.45648 * 200.17823 * 25 24 7 45 45 H 1.08993 * 109.27600 * 80.32583 * 25 24 7 46 46 H 1.08995 * 109.59186 * 331.51201 * 26 25 24 47 47 H 1.09004 * 109.70923 * 211.14971 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6767 -0.2073 2.1392 6 6 3.5881 -0.7208 1.2496 7 7 4.0731 -1.2355 2.5168 8 6 4.3031 -0.3690 3.5232 9 8 4.0162 0.8048 3.3920 10 6 4.9047 -0.8466 4.7870 11 6 4.5337 -0.2628 6.0033 12 6 5.0962 -0.7001 7.1890 13 6 6.0198 -1.7222 7.1873 14 6 6.4052 -2.3216 5.9736 15 6 7.3577 -3.3672 5.9679 16 1 7.9444 -3.5584 5.0816 17 6 7.5398 -4.1540 7.1108 18 7 6.6283 -4.1653 8.0492 19 14 9.0844 -5.1879 7.2965 20 1 10.2774 -4.3038 7.2757 21 1 9.0360 -5.9229 8.5859 22 1 9.1680 -6.1585 6.1757 23 6 5.8392 -1.8752 4.7675 24 6 4.3296 -2.6703 2.7430 25 6 3.2116 -3.5301 2.1258 26 6 1.8692 -2.8659 2.3564 27 8 1.5796 -2.0224 1.2495 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 3.9508 0.2973 1.1083 36 1 3.9514 -1.3516 0.4383 37 1 3.8079 0.5368 6.0161 38 1 4.8063 -0.2403 8.1222 39 1 6.4518 -2.0608 8.1175 40 1 6.7547 -4.7103 8.8415 41 1 6.1284 -2.3288 3.8309 42 1 5.2839 -2.9390 2.2903 43 1 4.3769 -2.8606 3.8153 44 1 3.2134 -4.5161 2.5904 45 1 3.3865 -3.6330 1.0549 46 1 1.9078 -2.2707 3.2687 47 1 1.0938 -3.6264 2.4488 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294347059.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:20 Heat of formation + Delta-G solvation = -74.563920 kcal Electronic energy + Delta-G solvation = -27644.141904 eV Core-core repulsion = 23983.988850 eV Total energy + Delta-G solvation = -3660.153054 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.86402 -40.05311 -38.80330 -36.95967 -36.19695 -35.54039 -32.99127 -32.02631 -31.79070 -29.21502 -28.05076 -27.43434 -27.03977 -25.15371 -23.28622 -22.73490 -22.23607 -21.25034 -20.67314 -19.07590 -17.98610 -17.68566 -17.48718 -17.28591 -16.97519 -16.54990 -16.07327 -15.83905 -15.21795 -14.98843 -14.92194 -14.76019 -14.59651 -14.17433 -14.03341 -13.73121 -13.58083 -13.47610 -13.31200 -13.04015 -12.87179 -12.86986 -12.58394 -12.42546 -12.25668 -12.23272 -12.03772 -11.93735 -11.87465 -11.73253 -11.43063 -11.30324 -11.04913 -10.76394 -10.60518 -9.66529 -9.45322 -9.38656 -8.65392 -6.37475 0.43325 0.91603 1.42003 1.50275 1.53823 1.85347 2.03623 2.22134 2.61079 2.73163 3.59560 3.64436 3.65552 3.78051 3.94507 4.00741 4.10580 4.19616 4.29986 4.34147 4.38974 4.44778 4.53266 4.55452 4.63282 4.76700 4.79721 4.82214 4.88809 4.90974 4.98340 5.00994 5.04946 5.06853 5.09908 5.14703 5.21030 5.29958 5.40825 5.44290 5.45643 5.63608 5.78545 5.96442 6.00282 6.18226 6.25690 6.59333 6.60865 6.88404 6.91740 7.12168 8.31354 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021057 B = 0.003514 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.374769 B = 7967.029756 C = 8578.722987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.078 4.078 3 C -0.145 4.145 4 C 0.102 3.898 5 H 0.020 0.980 6 C 0.078 3.922 7 N -0.601 5.601 8 C 0.557 3.443 9 O -0.579 6.579 10 C -0.120 4.120 11 C -0.194 4.194 12 C -0.112 4.112 13 C -0.163 4.163 14 C 0.078 3.922 15 C -0.490 4.490 16 H 0.083 0.917 17 C 0.040 3.960 18 N -0.821 5.821 19 Si 0.979 3.021 20 H -0.264 1.264 21 H -0.271 1.271 22 H -0.256 1.256 23 C -0.191 4.191 24 C 0.090 3.910 25 C -0.154 4.154 26 C 0.073 3.927 27 O -0.385 6.385 28 H 0.058 0.942 29 H 0.041 0.959 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.054 0.946 33 H 0.081 0.919 34 H 0.041 0.959 35 H 0.083 0.917 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.117 0.883 39 H 0.110 0.890 40 H 0.290 0.710 41 H 0.122 0.878 42 H 0.078 0.922 43 H 0.089 0.911 44 H 0.105 0.895 45 H 0.090 0.910 46 H 0.026 0.974 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.033 -0.672 -12.747 14.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.097 4.097 3 C -0.202 4.202 4 C 0.042 3.958 5 H 0.038 0.962 6 C -0.045 4.045 7 N -0.332 5.332 8 C 0.348 3.652 9 O -0.460 6.460 10 C -0.123 4.123 11 C -0.215 4.215 12 C -0.130 4.130 13 C -0.183 4.183 14 C 0.075 3.925 15 C -0.519 4.519 16 H 0.101 0.899 17 C -0.176 4.176 18 N -0.446 5.446 19 Si 0.800 3.200 20 H -0.189 1.189 21 H -0.195 1.195 22 H -0.180 1.180 23 C -0.211 4.211 24 C -0.031 4.031 25 C -0.193 4.193 26 C -0.003 4.003 27 O -0.304 6.304 28 H 0.077 0.923 29 H 0.060 0.940 30 H 0.092 0.908 31 H 0.110 0.890 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.060 0.940 35 H 0.101 0.899 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.135 0.865 39 H 0.128 0.872 40 H 0.100 0.900 41 H 0.140 0.860 42 H 0.096 0.904 43 H 0.107 0.893 44 H 0.123 0.877 45 H 0.108 0.892 46 H 0.045 0.955 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.352 -0.276 -12.771 14.739 hybrid contribution 0.880 -0.140 1.062 1.386 sum -6.472 -0.417 -11.709 13.385 Atomic orbital electron populations 1.21715 0.93821 1.02166 1.01788 1.21066 0.97148 0.95562 0.95957 1.21866 1.01104 0.94906 1.02342 1.21970 0.92132 0.83353 0.98356 0.96244 1.22578 0.95596 1.01190 0.85147 1.47827 1.65041 1.07990 1.12317 1.18917 0.76853 0.85167 0.84231 1.90637 1.54395 1.18516 1.82486 1.19537 1.01005 0.99362 0.92416 1.20553 1.05700 1.03366 0.91847 1.20872 0.97722 0.97412 0.96978 1.21534 1.00789 0.96999 0.98971 1.17860 0.91316 0.91953 0.91329 1.19779 1.18972 1.13234 0.99953 0.89921 1.26684 0.99402 0.97347 0.94133 1.69840 1.32769 1.33732 1.08306 0.85288 0.77847 0.78136 0.78743 1.18873 1.19522 1.18032 1.21561 1.00972 1.00189 0.98381 1.22734 0.99074 0.78118 1.03152 1.22503 0.93802 0.99866 1.03080 1.22267 0.97443 0.92831 0.87733 1.86184 1.77097 1.22738 1.44371 0.92253 0.94003 0.90827 0.88978 0.92688 0.89979 0.93950 0.89857 0.88128 0.88211 0.86532 0.87195 0.89959 0.85992 0.90404 0.89325 0.87655 0.89160 0.95519 0.86871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.04 71.98 0.65 -1.97 16 2 C -0.08 -1.64 2.72 -10.79 -0.03 -1.67 16 3 C -0.14 -2.97 8.86 71.98 0.64 -2.33 16 4 C 0.10 2.76 2.22 31.21 0.07 2.83 16 5 H 0.02 0.66 8.14 -2.38 -0.02 0.64 16 6 C 0.08 2.21 4.65 87.26 0.41 2.61 16 7 N -0.60 -20.25 2.18 -820.59 -1.79 -22.04 16 8 C 0.56 23.52 7.34 86.80 0.64 24.16 16 9 O -0.58 -26.97 16.27 -3.85 -0.06 -27.03 16 10 C -0.12 -5.49 5.21 -20.13 -0.10 -5.59 16 11 C -0.19 -9.07 9.61 22.70 0.22 -8.85 16 12 C -0.11 -5.18 10.01 22.18 0.22 -4.96 16 13 C -0.16 -8.25 8.69 22.77 0.20 -8.05 16 14 C 0.08 3.93 5.57 -21.32 -0.12 3.81 16 15 C -0.49 -24.29 9.05 23.47 0.21 -24.08 16 16 H 0.08 3.89 7.90 -2.91 -0.02 3.86 16 17 C 0.04 1.88 5.14 85.25 0.44 2.32 16 18 N -0.82 -40.10 10.94 21.82 0.24 -39.86 16 19 Si 0.98 35.54 29.59 68.60 2.03 37.57 16 20 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 21 H -0.27 -9.42 7.11 99.48 0.71 -8.71 16 22 H -0.26 -8.90 7.11 99.48 0.71 -8.19 16 23 C -0.19 -8.75 7.11 23.01 0.16 -8.59 16 24 C 0.09 2.71 4.49 86.51 0.39 3.10 16 25 C -0.15 -3.56 5.79 30.43 0.18 -3.38 16 26 C 0.07 1.84 6.37 71.50 0.46 2.29 16 27 O -0.39 -10.00 8.79 -117.84 -1.04 -11.04 16 28 H 0.06 1.17 7.69 -2.39 -0.02 1.15 16 29 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.05 1.18 6.26 -2.38 -0.01 1.17 16 33 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.04 1.00 8.14 -2.38 -0.02 0.99 16 35 H 0.08 2.54 5.29 -2.39 -0.01 2.53 16 36 H 0.10 2.38 8.11 -2.39 -0.02 2.36 16 37 H 0.10 4.51 7.97 -2.91 -0.02 4.49 16 38 H 0.12 4.76 8.06 -2.91 -0.02 4.73 16 39 H 0.11 5.74 6.14 -2.91 -0.02 5.72 16 40 H 0.29 12.86 8.30 -92.71 -0.77 12.09 16 41 H 0.12 5.06 5.45 -2.91 -0.02 5.04 16 42 H 0.08 2.16 7.37 -2.39 -0.02 2.15 16 43 H 0.09 3.19 4.92 -2.39 -0.01 3.18 16 44 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.09 1.84 8.01 -2.39 -0.02 1.82 16 46 H 0.03 0.82 7.41 -2.39 -0.02 0.80 16 47 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -59.58 365.00 4.96 -54.62 By element: Atomic # 1 Polarization: 35.17 SS G_CDS: 0.96 Total: 36.14 kcal Atomic # 6 Polarization: -32.97 SS G_CDS: 4.62 Total: -28.35 kcal Atomic # 7 Polarization: -60.35 SS G_CDS: -1.55 Total: -61.90 kcal Atomic # 8 Polarization: -36.98 SS G_CDS: -1.10 Total: -38.07 kcal Atomic # 14 Polarization: 35.54 SS G_CDS: 2.03 Total: 37.57 kcal Total: -59.58 4.96 -54.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294347059.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.943 kcal (2) G-P(sol) polarization free energy of solvation -59.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds