Wall clock time and date at job start Tue Mar 31 2020 12:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46942 * 2 1 4 4 C 1.52996 * 109.47472 * 120.00025 * 2 1 3 5 5 H 1.09007 * 109.46574 * 59.99353 * 4 2 1 6 6 C 1.54805 * 109.47498 * 179.97438 * 4 2 1 7 7 N 1.45116 * 109.53822 * 187.89130 * 6 4 2 8 8 C 1.34780 * 118.75783 * 90.70983 * 7 6 4 9 9 O 1.21546 * 120.00208 * 354.96722 * 8 7 6 10 10 C 1.47887 * 119.99968 * 174.96347 * 8 7 6 11 11 C 1.39916 * 120.02709 * 145.80659 * 10 8 7 12 12 C 1.38329 * 120.36015 * 179.74509 * 11 10 8 13 13 C 1.37750 * 120.40801 * 0.55440 * 12 11 10 14 14 C 1.40739 * 120.04266 * 359.70064 * 13 12 11 15 15 C 1.41445 * 120.17857 * 180.02562 * 14 13 12 16 16 H 1.07995 * 119.99971 * 150.66206 * 15 14 13 17 17 C 1.39933 * 119.99940 * 330.66088 * 15 14 13 18 18 N 1.30836 * 119.99891 * 349.29823 * 17 15 14 19 19 Si 1.86798 * 120.00293 * 169.30604 * 17 15 14 20 20 H 1.48500 * 109.46998 * 359.97438 * 19 17 15 21 21 H 1.48492 * 109.47706 * 119.99932 * 19 17 15 22 22 H 1.48504 * 109.46849 * 240.00019 * 19 17 15 23 23 C 1.38998 * 120.02430 * 326.07962 * 10 8 7 24 24 C 1.47504 * 122.48565 * 270.70673 * 7 6 4 25 25 C 1.53573 * 111.02887 * 41.62919 * 24 7 6 26 26 C 1.51541 * 109.57811 * 39.97466 * 25 24 7 27 27 O 1.38016 * 109.46809 * 300.00631 * 4 2 1 28 28 H 1.09002 * 109.46844 * 299.99839 * 1 2 3 29 29 H 1.09004 * 109.46937 * 59.99804 * 1 2 3 30 30 H 1.08993 * 109.46830 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47511 * 240.00727 * 2 1 3 32 32 H 1.09002 * 109.47220 * 60.00391 * 3 2 1 33 33 H 1.08996 * 109.47161 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47181 * 299.99983 * 3 2 1 35 35 H 1.09002 * 109.45367 * 307.91159 * 6 4 2 36 36 H 1.08996 * 109.45715 * 67.86514 * 6 4 2 37 37 H 1.08002 * 119.81684 * 0.02562 * 11 10 8 38 38 H 1.08000 * 119.79193 * 180.25994 * 12 11 10 39 39 H 1.08004 * 119.97664 * 179.72340 * 13 12 11 40 40 H 0.97001 * 119.99449 * 180.02562 * 18 17 15 41 41 H 1.08003 * 120.20051 * 359.96129 * 23 10 8 42 42 H 1.09001 * 109.16949 * 281.23402 * 24 7 6 43 43 H 1.08997 * 109.16857 * 162.02738 * 24 7 6 44 44 H 1.08999 * 109.44962 * 279.94880 * 25 24 7 45 45 H 1.08998 * 109.45881 * 160.01041 * 25 24 7 46 46 H 1.09007 * 109.58481 * 148.81598 * 26 25 24 47 47 H 1.08997 * 109.70441 * 28.46020 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6766 -1.7489 1.2492 6 6 3.5881 -0.7218 1.2489 7 7 4.0734 -1.5617 2.3282 8 6 4.3035 -2.8666 2.0811 9 8 4.0186 -3.3396 0.9983 10 6 4.9028 -3.7228 3.1274 11 6 4.5277 -5.0667 3.2321 12 6 5.0878 -5.8751 4.2048 13 6 6.0125 -5.3640 5.0887 14 6 6.3981 -4.0132 5.0023 15 6 7.3477 -3.4856 5.9081 16 1 7.9883 -2.6707 5.6050 17 6 7.4571 -4.0194 7.1970 18 7 6.5525 -4.8557 7.6376 19 14 8.8944 -3.5378 8.2886 20 1 9.7713 -2.5856 7.5609 21 1 8.3830 -2.8945 9.5254 22 1 9.6720 -4.7512 8.6470 23 6 5.8348 -3.1916 4.0113 24 6 4.3243 -1.0415 3.6854 25 6 3.2121 -0.0758 4.1198 26 6 1.8696 -0.6076 3.6600 27 8 1.5799 -0.0707 2.3761 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 3.1299 1.4426 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 3.9508 -1.1085 0.2965 36 1 3.9516 0.2961 1.3893 37 1 3.8004 -5.4762 2.5467 38 1 4.7948 -6.9123 4.2747 39 1 6.4420 -6.0004 5.8484 40 1 6.6282 -5.2254 8.5312 41 1 6.1245 -2.1538 3.9365 42 1 5.2791 -0.5157 3.6963 43 1 4.3680 -1.8754 4.3859 44 1 3.3867 0.9033 3.6736 45 1 3.2138 0.0151 5.2060 46 1 1.0957 -0.3052 4.3656 47 1 1.9058 -1.6954 3.6013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294350161.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:25 Heat of formation + Delta-G solvation = -62.645209 kcal Electronic energy + Delta-G solvation = -27661.711707 eV Core-core repulsion = 24002.075486 eV Total energy + Delta-G solvation = -3659.636220 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.51576 -38.69133 -37.07972 -35.76542 -34.85515 -33.70708 -31.84138 -30.35699 -29.95934 -27.93988 -27.06017 -26.27544 -25.34144 -23.83735 -22.02150 -21.13875 -20.74728 -20.02378 -19.07586 -17.45318 -16.65172 -16.27120 -16.17253 -15.69942 -15.43182 -14.82035 -14.67174 -14.57262 -14.08971 -13.75690 -13.55124 -13.21528 -13.11385 -12.97887 -12.77386 -12.57673 -12.21103 -12.11847 -11.94352 -11.72206 -11.54363 -11.27818 -11.26068 -11.17347 -10.92680 -10.82957 -10.71115 -10.66845 -10.50981 -10.35965 -10.19318 -9.59675 -9.42783 -9.33865 -9.09780 -8.28001 -7.63739 -7.52901 -6.82324 -4.51805 2.20019 2.66509 3.02234 3.06525 3.06903 3.31924 3.64627 3.72223 3.86783 4.54725 4.74074 4.81971 4.94006 5.02566 5.06602 5.13192 5.28885 5.37809 5.49244 5.53759 5.56192 5.61966 5.65056 5.73565 5.84363 5.86558 5.87861 5.97920 6.04925 6.07448 6.09827 6.14303 6.21296 6.26585 6.33229 6.38941 6.69567 6.85267 6.88041 6.99223 7.12450 7.29318 7.54274 7.66205 7.76231 7.85801 7.89740 8.04410 8.45351 8.70429 8.74568 8.77787 10.12382 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020363 B = 0.003546 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.726877 B = 7894.244154 C = 8565.073674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.084 4.084 3 C -0.144 4.144 4 C 0.096 3.904 5 H 0.052 0.948 6 C 0.084 3.916 7 N -0.612 5.612 8 C 0.561 3.439 9 O -0.553 6.553 10 C -0.119 4.119 11 C -0.174 4.174 12 C -0.117 4.117 13 C -0.130 4.130 14 C 0.100 3.900 15 C -0.464 4.464 16 H 0.078 0.922 17 C 0.074 3.926 18 N -0.803 5.803 19 Si 0.910 3.090 20 H -0.261 1.261 21 H -0.274 1.274 22 H -0.273 1.273 23 C -0.192 4.192 24 C 0.095 3.905 25 C -0.166 4.166 26 C 0.076 3.924 27 O -0.384 6.384 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.050 0.950 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.124 0.876 40 H 0.280 0.720 41 H 0.108 0.892 42 H 0.066 0.934 43 H 0.115 0.885 44 H 0.074 0.926 45 H 0.086 0.914 46 H 0.088 0.912 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.210 9.670 -5.673 13.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.103 4.103 3 C -0.201 4.201 4 C 0.036 3.964 5 H 0.069 0.931 6 C -0.040 4.040 7 N -0.344 5.344 8 C 0.353 3.647 9 O -0.432 6.432 10 C -0.122 4.122 11 C -0.194 4.194 12 C -0.135 4.135 13 C -0.150 4.150 14 C 0.098 3.902 15 C -0.494 4.494 16 H 0.096 0.904 17 C -0.142 4.142 18 N -0.429 5.429 19 Si 0.735 3.265 20 H -0.185 1.185 21 H -0.200 1.200 22 H -0.198 1.198 23 C -0.212 4.212 24 C -0.027 4.027 25 C -0.204 4.204 26 C 0.000 4.000 27 O -0.302 6.302 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.141 0.859 40 H 0.091 0.909 41 H 0.125 0.875 42 H 0.084 0.916 43 H 0.133 0.867 44 H 0.092 0.908 45 H 0.105 0.895 46 H 0.106 0.894 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.503 9.478 -6.037 13.512 hybrid contribution 0.892 -0.105 0.752 1.172 sum -6.611 9.372 -5.285 12.628 Atomic orbital electron populations 1.21743 0.94655 1.01662 1.01833 1.21121 0.96530 0.96783 0.95822 1.21805 1.00807 0.95635 1.01878 1.21979 0.92877 0.95700 0.85804 0.93054 1.22303 0.94864 0.95125 0.91672 1.47800 1.66530 1.09181 1.10936 1.19085 0.76590 0.81238 0.87745 1.90662 1.53094 1.73464 1.25958 1.19294 1.01502 0.94251 0.97182 1.20420 1.04868 0.92650 1.01450 1.20701 0.98616 0.97921 0.96298 1.21596 0.98903 0.95689 0.98802 1.17554 0.90920 0.90929 0.90787 1.19553 1.17075 1.16561 0.96254 0.90359 1.25864 0.96129 0.93527 0.98705 1.69772 1.30776 1.24383 1.18007 0.86221 0.81313 0.79382 0.79585 1.18479 1.19965 1.19791 1.21516 1.01139 0.98608 0.99938 1.22592 0.97155 0.99512 0.83462 1.22495 0.95708 0.99938 1.02255 1.22147 0.96048 0.98301 0.83508 1.86171 1.77026 1.54142 1.12901 0.91828 0.92959 0.93009 0.90078 0.91765 0.92757 0.93056 0.89646 0.90266 0.88495 0.88587 0.85866 0.90884 0.87460 0.91619 0.86706 0.90780 0.89517 0.89427 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.04 37.16 0.34 -1.12 16 2 C -0.08 -0.94 2.81 -90.62 -0.25 -1.19 16 3 C -0.14 -1.42 8.71 37.16 0.32 -1.10 16 4 C 0.10 1.32 2.38 -25.78 -0.06 1.26 16 5 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 6 C 0.08 1.23 4.22 -3.83 -0.02 1.21 16 7 N -0.61 -10.36 2.19 -173.58 -0.38 -10.74 16 8 C 0.56 11.64 7.33 -12.31 -0.09 11.55 16 9 O -0.55 -12.64 16.28 5.32 0.09 -12.56 16 10 C -0.12 -2.65 5.20 -105.04 -0.55 -3.20 16 11 C -0.17 -3.93 9.61 -38.92 -0.37 -4.30 16 12 C -0.12 -2.64 10.01 -39.73 -0.40 -3.04 16 13 C -0.13 -3.19 8.65 -38.82 -0.34 -3.52 16 14 C 0.10 2.47 5.54 -106.87 -0.59 1.88 16 15 C -0.46 -11.41 9.06 -37.73 -0.34 -11.75 16 16 H 0.08 1.85 7.87 -52.49 -0.41 1.44 16 17 C 0.07 1.75 5.25 -17.34 -0.09 1.66 16 18 N -0.80 -19.53 10.87 55.55 0.60 -18.93 16 19 Si 0.91 17.73 29.57 -169.99 -5.03 12.70 16 20 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 21 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 22 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 23 C -0.19 -4.31 7.11 -38.44 -0.27 -4.58 16 24 C 0.09 1.45 4.45 -3.20 -0.01 1.44 16 25 C -0.17 -2.07 5.79 -27.17 -0.16 -2.23 16 26 C 0.08 0.99 6.37 36.42 0.23 1.23 16 27 O -0.38 -5.15 8.11 -26.54 -0.22 -5.36 16 28 H 0.06 0.69 7.69 -51.93 -0.40 0.29 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 0.67 7.69 -51.93 -0.40 0.27 16 33 H 0.05 0.53 6.61 -51.93 -0.34 0.18 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.09 1.33 7.35 -51.93 -0.38 0.95 16 36 H 0.08 1.03 6.88 -51.93 -0.36 0.67 16 37 H 0.10 2.11 7.98 -52.49 -0.42 1.70 16 38 H 0.10 1.93 8.06 -52.49 -0.42 1.50 16 39 H 0.12 3.11 6.25 -52.48 -0.33 2.78 16 40 H 0.28 6.23 8.30 -40.82 -0.34 5.89 16 41 H 0.11 2.21 5.45 -52.48 -0.29 1.93 16 42 H 0.07 0.97 7.36 -51.93 -0.38 0.58 16 43 H 0.12 2.05 4.93 -51.93 -0.26 1.80 16 44 H 0.07 0.88 8.01 -51.93 -0.42 0.46 16 45 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.05 0.82 7.41 -51.93 -0.38 0.44 16 LS Contribution 364.72 15.07 5.50 5.50 Total: -1.00 -27.20 364.72 -9.37 -36.57 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -7.28 Total: 8.63 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: -2.65 Total: -15.81 kcal Atomic # 7 Polarization: -29.89 SS G_CDS: 0.22 Total: -29.67 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.13 Total: -17.92 kcal Atomic # 14 Polarization: 17.73 SS G_CDS: -5.03 Total: 12.70 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -27.20 -9.37 -36.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294350161.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.070 kcal (2) G-P(sol) polarization free energy of solvation -27.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds