Wall clock time and date at job start Tue Mar 31 2020 12:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46942 * 2 1 4 4 C 1.52996 * 109.47472 * 120.00025 * 2 1 3 5 5 H 1.09007 * 109.46574 * 59.99353 * 4 2 1 6 6 C 1.54805 * 109.47498 * 179.97438 * 4 2 1 7 7 N 1.45116 * 109.53822 * 187.89130 * 6 4 2 8 8 C 1.34780 * 118.75783 * 90.70983 * 7 6 4 9 9 O 1.21546 * 120.00208 * 354.96722 * 8 7 6 10 10 C 1.47887 * 119.99968 * 174.96347 * 8 7 6 11 11 C 1.39916 * 120.02709 * 145.80659 * 10 8 7 12 12 C 1.38329 * 120.36015 * 179.74509 * 11 10 8 13 13 C 1.37750 * 120.40801 * 0.55440 * 12 11 10 14 14 C 1.40739 * 120.04266 * 359.70064 * 13 12 11 15 15 C 1.41445 * 120.17857 * 180.02562 * 14 13 12 16 16 H 1.07995 * 119.99971 * 150.66206 * 15 14 13 17 17 C 1.39933 * 119.99940 * 330.66088 * 15 14 13 18 18 N 1.30836 * 119.99891 * 349.29823 * 17 15 14 19 19 Si 1.86798 * 120.00293 * 169.30604 * 17 15 14 20 20 H 1.48500 * 109.46998 * 359.97438 * 19 17 15 21 21 H 1.48492 * 109.47706 * 119.99932 * 19 17 15 22 22 H 1.48504 * 109.46849 * 240.00019 * 19 17 15 23 23 C 1.38998 * 120.02430 * 326.07962 * 10 8 7 24 24 C 1.47504 * 122.48565 * 270.70673 * 7 6 4 25 25 C 1.53573 * 111.02887 * 41.62919 * 24 7 6 26 26 C 1.51541 * 109.57811 * 39.97466 * 25 24 7 27 27 O 1.38016 * 109.46809 * 300.00631 * 4 2 1 28 28 H 1.09002 * 109.46844 * 299.99839 * 1 2 3 29 29 H 1.09004 * 109.46937 * 59.99804 * 1 2 3 30 30 H 1.08993 * 109.46830 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47511 * 240.00727 * 2 1 3 32 32 H 1.09002 * 109.47220 * 60.00391 * 3 2 1 33 33 H 1.08996 * 109.47161 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47181 * 299.99983 * 3 2 1 35 35 H 1.09002 * 109.45367 * 307.91159 * 6 4 2 36 36 H 1.08996 * 109.45715 * 67.86514 * 6 4 2 37 37 H 1.08002 * 119.81684 * 0.02562 * 11 10 8 38 38 H 1.08000 * 119.79193 * 180.25994 * 12 11 10 39 39 H 1.08004 * 119.97664 * 179.72340 * 13 12 11 40 40 H 0.97001 * 119.99449 * 180.02562 * 18 17 15 41 41 H 1.08003 * 120.20051 * 359.96129 * 23 10 8 42 42 H 1.09001 * 109.16949 * 281.23402 * 24 7 6 43 43 H 1.08997 * 109.16857 * 162.02738 * 24 7 6 44 44 H 1.08999 * 109.44962 * 279.94880 * 25 24 7 45 45 H 1.08998 * 109.45881 * 160.01041 * 25 24 7 46 46 H 1.09007 * 109.58481 * 148.81598 * 26 25 24 47 47 H 1.08997 * 109.70441 * 28.46020 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6766 -1.7489 1.2492 6 6 3.5881 -0.7218 1.2489 7 7 4.0734 -1.5617 2.3282 8 6 4.3035 -2.8666 2.0811 9 8 4.0186 -3.3396 0.9983 10 6 4.9028 -3.7228 3.1274 11 6 4.5277 -5.0667 3.2321 12 6 5.0878 -5.8751 4.2048 13 6 6.0125 -5.3640 5.0887 14 6 6.3981 -4.0132 5.0023 15 6 7.3477 -3.4856 5.9081 16 1 7.9883 -2.6707 5.6050 17 6 7.4571 -4.0194 7.1970 18 7 6.5525 -4.8557 7.6376 19 14 8.8944 -3.5378 8.2886 20 1 9.7713 -2.5856 7.5609 21 1 8.3830 -2.8945 9.5254 22 1 9.6720 -4.7512 8.6470 23 6 5.8348 -3.1916 4.0113 24 6 4.3243 -1.0415 3.6854 25 6 3.2121 -0.0758 4.1198 26 6 1.8696 -0.6076 3.6600 27 8 1.5799 -0.0707 2.3761 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 3.1299 1.4426 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 3.9508 -1.1085 0.2965 36 1 3.9516 0.2961 1.3893 37 1 3.8004 -5.4762 2.5467 38 1 4.7948 -6.9123 4.2747 39 1 6.4420 -6.0004 5.8484 40 1 6.6282 -5.2254 8.5312 41 1 6.1245 -2.1538 3.9365 42 1 5.2791 -0.5157 3.6963 43 1 4.3680 -1.8754 4.3859 44 1 3.3867 0.9033 3.6736 45 1 3.2138 0.0151 5.2060 46 1 1.0957 -0.3052 4.3656 47 1 1.9058 -1.6954 3.6013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294350161.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:24 Heat of formation + Delta-G solvation = -74.825426 kcal Electronic energy + Delta-G solvation = -27662.239880 eV Core-core repulsion = 24002.075486 eV Total energy + Delta-G solvation = -3660.164394 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.87931 -40.09482 -38.81761 -36.95552 -36.04217 -35.50322 -32.96403 -32.03408 -31.77680 -29.19756 -27.91852 -27.55956 -27.09112 -25.21529 -23.40164 -22.73782 -22.27152 -21.00111 -20.66603 -19.04964 -17.86224 -17.79520 -17.49335 -17.18292 -16.85269 -16.54674 -16.03711 -15.98294 -15.17515 -15.04155 -14.85392 -14.76304 -14.60228 -14.22653 -14.03746 -13.93663 -13.59231 -13.41270 -13.22771 -12.88370 -12.86469 -12.79614 -12.66841 -12.50852 -12.25840 -12.22260 -12.01258 -11.87478 -11.80538 -11.64965 -11.42502 -11.29737 -11.10115 -10.77909 -10.58163 -9.66886 -9.43371 -9.35952 -8.59882 -6.39211 0.42281 0.90191 1.43139 1.48083 1.56705 1.84108 2.03144 2.23716 2.66346 2.75849 3.58531 3.63176 3.66914 3.80309 3.90905 4.01865 4.10340 4.20626 4.30570 4.34658 4.40614 4.45922 4.52814 4.54676 4.67548 4.78725 4.82336 4.88622 4.90510 4.92301 5.00329 5.01556 5.05986 5.08431 5.11094 5.14471 5.22957 5.31423 5.43666 5.44794 5.54099 5.63474 5.77106 5.95556 6.01994 6.18144 6.24993 6.60146 6.62056 6.90781 6.91674 7.11051 8.36860 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020363 B = 0.003546 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.726877 B = 7894.244154 C = 8565.073674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.083 4.083 3 C -0.139 4.139 4 C 0.103 3.897 5 H 0.019 0.981 6 C 0.082 3.918 7 N -0.600 5.600 8 C 0.558 3.442 9 O -0.581 6.581 10 C -0.124 4.124 11 C -0.187 4.187 12 C -0.115 4.115 13 C -0.154 4.154 14 C 0.076 3.924 15 C -0.491 4.491 16 H 0.081 0.919 17 C 0.037 3.963 18 N -0.831 5.831 19 Si 0.981 3.019 20 H -0.258 1.258 21 H -0.267 1.267 22 H -0.270 1.270 23 C -0.184 4.184 24 C 0.091 3.909 25 C -0.154 4.154 26 C 0.073 3.927 27 O -0.379 6.379 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.041 0.959 31 H 0.082 0.918 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.118 0.882 39 H 0.110 0.890 40 H 0.287 0.713 41 H 0.123 0.877 42 H 0.078 0.922 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.105 0.895 46 H 0.113 0.887 47 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.213 12.076 -5.441 15.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.102 4.102 3 C -0.196 4.196 4 C 0.043 3.957 5 H 0.037 0.963 6 C -0.041 4.041 7 N -0.331 5.331 8 C 0.349 3.651 9 O -0.463 6.463 10 C -0.127 4.127 11 C -0.207 4.207 12 C -0.133 4.133 13 C -0.174 4.174 14 C 0.074 3.926 15 C -0.520 4.520 16 H 0.099 0.901 17 C -0.178 4.178 18 N -0.457 5.457 19 Si 0.803 3.197 20 H -0.181 1.181 21 H -0.191 1.191 22 H -0.195 1.195 23 C -0.204 4.204 24 C -0.030 4.030 25 C -0.192 4.192 26 C -0.003 4.003 27 O -0.298 6.298 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.061 0.939 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.136 0.864 39 H 0.128 0.872 40 H 0.098 0.902 41 H 0.141 0.859 42 H 0.096 0.904 43 H 0.106 0.894 44 H 0.109 0.891 45 H 0.123 0.877 46 H 0.130 0.870 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -7.525 11.915 -5.802 15.240 hybrid contribution 0.821 -0.849 0.655 1.351 sum -6.704 11.065 -5.147 13.924 Atomic orbital electron populations 1.21714 0.93909 1.01319 1.02584 1.21159 0.97170 0.97575 0.94300 1.21764 1.00873 0.94343 1.02587 1.21906 0.92035 0.94594 0.87181 0.96312 1.22512 0.95609 0.95585 0.90368 1.47839 1.65046 1.08089 1.12168 1.18918 0.76810 0.82466 0.86934 1.90639 1.54551 1.74346 1.26771 1.19543 1.01234 0.94586 0.97359 1.20594 1.05233 0.93165 1.01715 1.20894 0.97801 0.99025 0.95565 1.21562 1.00366 0.95866 0.99565 1.17881 0.91618 0.91396 0.91690 1.19793 1.17732 1.17385 0.97128 0.90107 1.26663 0.98309 0.93162 0.99617 1.69832 1.32161 1.24998 1.18756 0.85153 0.77844 0.79047 0.77677 1.18116 1.19148 1.19490 1.21633 1.00544 0.99092 0.99157 1.22644 0.99203 0.99248 0.81917 1.22443 0.93865 0.99489 1.03435 1.22267 0.97401 0.96729 0.83946 1.86195 1.76986 1.53741 1.12879 0.92214 0.91021 0.93941 0.89966 0.92066 0.92579 0.91347 0.90627 0.87785 0.88078 0.86423 0.87174 0.90191 0.85925 0.90433 0.89376 0.89089 0.87705 0.86958 0.95534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.04 71.98 0.65 -1.97 16 2 C -0.08 -1.73 2.81 -10.79 -0.03 -1.76 16 3 C -0.14 -2.35 8.71 71.98 0.63 -1.72 16 4 C 0.10 2.74 2.38 31.21 0.07 2.82 16 5 H 0.02 0.63 8.14 -2.38 -0.02 0.61 16 6 C 0.08 2.31 4.22 87.25 0.37 2.68 16 7 N -0.60 -20.09 2.19 -821.35 -1.80 -21.90 16 8 C 0.56 23.47 7.33 86.80 0.64 24.10 16 9 O -0.58 -27.18 16.28 -3.86 -0.06 -27.24 16 10 C -0.12 -5.64 5.20 -20.13 -0.10 -5.74 16 11 C -0.19 -8.65 9.61 22.70 0.22 -8.43 16 12 C -0.11 -5.29 10.01 22.18 0.22 -5.07 16 13 C -0.15 -7.75 8.65 22.77 0.20 -7.56 16 14 C 0.08 3.85 5.54 -21.32 -0.12 3.73 16 15 C -0.49 -24.36 9.06 23.47 0.21 -24.15 16 16 H 0.08 3.84 7.87 -2.91 -0.02 3.81 16 17 C 0.04 1.72 5.25 85.25 0.45 2.17 16 18 N -0.83 -40.84 10.87 21.82 0.24 -40.60 16 19 Si 0.98 35.86 29.57 68.60 2.03 37.89 16 20 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 21 H -0.27 -9.36 7.11 99.48 0.71 -8.65 16 22 H -0.27 -9.68 7.11 99.48 0.71 -8.97 16 23 C -0.18 -8.40 7.11 23.01 0.16 -8.24 16 24 C 0.09 2.70 4.45 86.38 0.38 3.09 16 25 C -0.15 -3.49 5.79 30.31 0.18 -3.32 16 26 C 0.07 1.79 6.37 71.50 0.46 2.24 16 27 O -0.38 -9.55 8.11 -117.88 -0.96 -10.51 16 28 H 0.06 1.18 7.69 -2.39 -0.02 1.16 16 29 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 30 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.06 1.09 7.69 -2.39 -0.02 1.07 16 33 H 0.06 0.93 6.61 -2.39 -0.02 0.91 16 34 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.08 2.31 7.35 -2.39 -0.02 2.30 16 36 H 0.10 2.43 6.88 -2.39 -0.02 2.42 16 37 H 0.10 4.52 7.98 -2.91 -0.02 4.50 16 38 H 0.12 4.76 8.06 -2.91 -0.02 4.74 16 39 H 0.11 5.77 6.25 -2.91 -0.02 5.75 16 40 H 0.29 12.82 8.30 -92.71 -0.77 12.05 16 41 H 0.12 5.06 5.45 -2.91 -0.02 5.05 16 42 H 0.08 2.14 7.36 -2.39 -0.02 2.12 16 43 H 0.09 3.15 4.93 -2.39 -0.01 3.14 16 44 H 0.09 1.82 8.01 -2.39 -0.02 1.80 16 45 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 46 H 0.11 2.23 8.14 -2.38 -0.02 2.21 16 47 H 0.03 0.80 7.41 -2.39 -0.02 0.78 16 Total: -1.00 -59.60 364.72 4.98 -54.61 By element: Atomic # 1 Polarization: 33.91 SS G_CDS: 0.96 Total: 34.87 kcal Atomic # 6 Polarization: -31.70 SS G_CDS: 4.58 Total: -27.12 kcal Atomic # 7 Polarization: -60.93 SS G_CDS: -1.56 Total: -62.50 kcal Atomic # 8 Polarization: -36.73 SS G_CDS: -1.02 Total: -37.75 kcal Atomic # 14 Polarization: 35.86 SS G_CDS: 2.03 Total: 37.89 kcal Total: -59.60 4.98 -54.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294350161.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.213 kcal (2) G-P(sol) polarization free energy of solvation -59.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds