Wall clock time and date at job start Tue Mar 31 2020 12:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47010 * 2 1 4 4 C 1.53005 * 109.47303 * 240.00072 * 2 1 3 5 5 C 1.50706 * 109.47335 * 120.00156 * 2 1 3 6 6 O 1.20752 * 119.99768 * 359.97438 * 5 2 1 7 7 C 1.50697 * 120.00027 * 180.02562 * 5 2 1 8 8 C 1.52995 * 109.47125 * 179.97438 * 7 5 2 9 9 C 1.53001 * 109.47512 * 179.97438 * 8 7 5 10 10 C 1.50693 * 109.47459 * 180.02562 * 9 8 7 11 11 O 1.21284 * 119.99937 * 0.02562 * 10 9 8 12 12 N 1.34781 * 120.00055 * 179.97438 * 10 9 8 13 13 C 1.39234 * 119.99787 * 184.28933 * 12 10 9 14 14 C 1.39480 * 119.83810 * 324.71162 * 13 12 10 15 15 C 1.36373 * 120.17151 * 180.29688 * 14 13 12 16 16 C 1.40869 * 119.82638 * 359.48095 * 15 14 13 17 17 C 1.41149 * 120.16615 * 180.24677 * 16 15 14 18 18 H 1.08002 * 120.00564 * 215.01718 * 17 16 15 19 19 C 1.39907 * 119.99949 * 35.01923 * 17 16 15 20 20 N 1.30873 * 119.99679 * 355.54737 * 19 17 16 21 21 Si 1.86795 * 120.00282 * 175.54331 * 19 17 16 22 22 H 1.48497 * 109.47333 * 59.99949 * 21 19 17 23 23 H 1.48503 * 109.47069 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47361 * 299.99743 * 21 19 17 25 25 C 1.40878 * 119.67448 * 0.51928 * 16 15 14 26 26 C 1.36371 * 119.82161 * 359.73123 * 25 16 15 27 27 H 1.08996 * 109.47277 * 299.99475 * 1 2 3 28 28 H 1.08999 * 109.47252 * 60.00341 * 1 2 3 29 29 H 1.09011 * 109.47283 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47283 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.46835 * 299.99915 * 3 2 1 32 32 H 1.08998 * 109.47392 * 60.00286 * 3 2 1 33 33 H 1.08997 * 109.47163 * 300.00136 * 4 2 1 34 34 H 1.08999 * 109.46855 * 59.99906 * 4 2 1 35 35 H 1.09002 * 109.47167 * 179.97438 * 4 2 1 36 36 H 1.08997 * 109.47301 * 59.99535 * 7 5 2 37 37 H 1.09002 * 109.47402 * 300.00153 * 7 5 2 38 38 H 1.09005 * 109.46981 * 60.00015 * 8 7 5 39 39 H 1.08996 * 109.47130 * 300.00092 * 8 7 5 40 40 H 1.09005 * 109.46772 * 60.00148 * 9 8 7 41 41 H 1.09001 * 109.46975 * 300.00995 * 9 8 7 42 42 H 0.96994 * 119.99721 * 4.29555 * 12 10 9 43 43 H 1.07997 * 119.91386 * 0.02562 * 14 13 12 44 44 H 1.08003 * 120.08733 * 179.70254 * 15 14 13 45 45 H 0.97006 * 120.00240 * 180.02562 * 20 19 17 46 46 H 1.07991 * 120.08734 * 179.71251 * 25 16 15 47 47 H 1.08005 * 119.91371 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7105 1.2305 6 8 1.2476 -1.1690 2.0255 7 6 3.5139 -0.8476 1.4692 8 6 3.7518 -1.6029 2.7783 9 6 5.2561 -1.7427 3.0204 10 6 5.4903 -2.4872 4.3095 11 8 4.5470 -2.8688 4.9695 12 7 6.7481 -2.7298 4.7286 13 6 6.9657 -3.4942 5.8718 14 6 6.0806 -3.4037 6.9460 15 6 6.2905 -4.1447 8.0714 16 6 7.3987 -5.0114 8.1430 17 6 7.6199 -5.7856 9.3023 18 1 8.6281 -5.9866 9.6333 19 6 6.5331 -6.2927 10.0228 20 7 5.3119 -5.9776 9.6731 21 14 6.8248 -7.4195 11.4838 22 1 7.6313 -6.7057 12.5062 23 1 5.5199 -7.8169 12.0708 24 1 7.5552 -8.6323 11.0355 25 6 8.2883 -5.0975 7.0541 26 6 8.0681 -4.3463 5.9374 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0278 -0.0005 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6767 -1.7489 -1.2493 34 1 1.6766 -0.2074 -2.1392 35 1 3.1300 -0.7208 -1.2495 36 1 3.9647 0.1426 1.5344 37 1 3.9655 -1.3986 0.6442 38 1 3.3010 -2.5932 2.7135 39 1 3.3004 -1.0515 3.6031 40 1 5.7072 -0.7526 3.0851 41 1 5.7071 -2.2943 2.1955 42 1 7.5017 -2.3719 4.2338 43 1 5.2292 -2.7417 6.8880 44 1 5.6069 -4.0699 8.9042 45 1 4.5583 -6.3288 10.1728 46 1 9.1426 -5.7562 7.1037 47 1 8.7494 -4.4108 5.1019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294444154.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:04 Heat of formation + Delta-G solvation = -79.981798 kcal Electronic energy + Delta-G solvation = -25326.046646 eV Core-core repulsion = 21665.658655 eV Total energy + Delta-G solvation = -3660.387991 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.35428 -39.58218 -37.29149 -36.05875 -34.59537 -34.12985 -32.84564 -29.78463 -29.37573 -28.52399 -27.78151 -27.32316 -25.13409 -23.79928 -21.78250 -21.22362 -20.60563 -19.49230 -18.58570 -17.25563 -16.94903 -16.35603 -16.13929 -16.10884 -15.32076 -15.18801 -14.98690 -14.30490 -14.16163 -13.91794 -13.53450 -13.38927 -12.88118 -12.78437 -12.67110 -12.63719 -12.55323 -12.15103 -12.13649 -12.02092 -11.87151 -11.64003 -11.57623 -11.40915 -11.34068 -11.18736 -11.10952 -10.92018 -10.79584 -10.46585 -9.90028 -9.85333 -9.62447 -9.37970 -8.95551 -8.68440 -7.49137 -6.84980 -6.55665 -4.29812 1.79642 2.62795 3.04836 3.12280 3.13224 3.15314 3.38295 3.56312 3.88557 4.01754 4.30790 4.44773 4.55211 4.75037 4.78752 4.88269 4.96113 5.13158 5.13850 5.22362 5.27969 5.32814 5.38114 5.40848 5.46961 5.48904 5.53584 5.61672 5.71131 5.80416 5.81690 5.91913 6.07791 6.15743 6.34495 6.42205 6.84627 7.04111 7.07952 7.23827 7.33734 7.34970 7.67009 7.71704 8.02493 8.12560 8.24308 8.37800 8.70593 8.83256 8.96737 9.05547 10.35332 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.026626 B = 0.002056 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.342905 B =13613.490707 C =14357.776961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.118 4.118 3 C -0.138 4.138 4 C -0.139 4.139 5 C 0.361 3.639 6 O -0.441 6.441 7 C -0.172 4.172 8 C -0.097 4.097 9 C -0.137 4.137 10 C 0.494 3.506 11 O -0.525 6.525 12 N -0.656 5.656 13 C 0.005 3.995 14 C -0.094 4.094 15 C -0.144 4.144 16 C 0.099 3.901 17 C -0.464 4.464 18 H 0.075 0.925 19 C 0.068 3.932 20 N -0.808 5.808 21 Si 0.916 3.084 22 H -0.266 1.266 23 H -0.279 1.279 24 H -0.267 1.267 25 C -0.204 4.204 26 C -0.115 4.115 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.394 0.606 43 H 0.107 0.893 44 H 0.130 0.870 45 H 0.279 0.721 46 H 0.096 0.904 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.954 13.178 -20.528 24.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.119 4.119 3 C -0.196 4.196 4 C -0.196 4.196 5 C 0.235 3.765 6 O -0.312 6.312 7 C -0.209 4.209 8 C -0.134 4.134 9 C -0.178 4.178 10 C 0.281 3.719 11 O -0.401 6.401 12 N -0.300 5.300 13 C -0.087 4.087 14 C -0.114 4.114 15 C -0.164 4.164 16 C 0.097 3.903 17 C -0.495 4.495 18 H 0.093 0.907 19 C -0.147 4.147 20 N -0.435 5.435 21 Si 0.741 3.259 22 H -0.191 1.191 23 H -0.204 1.204 24 H -0.192 1.192 25 C -0.224 4.224 26 C -0.135 4.135 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.227 0.773 43 H 0.125 0.875 44 H 0.148 0.852 45 H 0.090 0.910 46 H 0.114 0.886 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.334 12.603 -19.565 23.673 hybrid contribution 0.563 -0.433 0.190 0.735 sum -3.771 12.170 -19.375 23.189 Atomic orbital electron populations 1.21723 0.92720 1.02728 1.02047 1.21217 0.97789 0.97212 0.95668 1.21835 1.01511 0.93471 1.02757 1.21836 1.01515 1.00444 0.95794 1.24597 0.91333 0.75422 0.85177 1.90434 1.59068 1.37606 1.44131 1.22161 0.95284 1.03114 1.00345 1.21142 0.94197 1.02041 0.96069 1.21646 0.98538 1.01300 0.96276 1.20614 0.83236 0.80892 0.87184 1.90735 1.41709 1.51094 1.56513 1.43037 1.07367 1.52183 1.27377 1.17303 1.01257 1.02175 0.87969 1.20652 0.98009 1.00387 0.92346 1.21310 1.00705 0.96528 0.97876 1.17725 0.91015 0.89678 0.91908 1.19435 0.93689 1.28502 1.07845 0.90704 1.25900 0.94720 0.96422 0.97659 1.69784 0.99154 1.37599 1.36914 0.86254 0.78299 0.80547 0.80824 1.19084 1.20438 1.19166 1.20682 1.03326 1.04092 0.94324 1.20076 0.97668 0.97678 0.98100 0.92079 0.92138 0.92080 0.91677 0.91505 0.92169 0.92163 0.91505 0.91674 0.88395 0.88391 0.90544 0.90559 0.89282 0.89219 0.77290 0.87493 0.85231 0.91015 0.88576 0.89204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.05 7.76 37.15 0.29 -0.77 16 2 C -0.12 -0.84 0.87 -155.66 -0.14 -0.97 16 3 C -0.14 -0.74 8.25 37.16 0.31 -0.43 16 4 C -0.14 -0.75 8.26 37.16 0.31 -0.44 16 5 C 0.36 3.61 5.97 -29.03 -0.17 3.44 16 6 O -0.44 -6.36 15.61 6.01 0.09 -6.27 16 7 C -0.17 -1.39 4.97 -27.89 -0.14 -1.53 16 8 C -0.10 -1.18 3.79 -26.73 -0.10 -1.28 16 9 C -0.14 -1.53 5.70 -27.89 -0.16 -1.69 16 10 C 0.49 8.64 7.66 -10.99 -0.08 8.55 16 11 O -0.52 -11.92 13.40 5.55 0.07 -11.84 16 12 N -0.66 -11.44 5.30 -9.74 -0.05 -11.49 16 13 C 0.01 0.12 6.31 -83.57 -0.53 -0.41 16 14 C -0.09 -2.40 8.61 -39.79 -0.34 -2.74 16 15 C -0.14 -3.97 8.61 -39.26 -0.34 -4.30 16 16 C 0.10 2.71 5.55 -106.80 -0.59 2.12 16 17 C -0.46 -12.60 9.02 -37.85 -0.34 -12.94 16 18 H 0.07 1.92 7.85 -52.49 -0.41 1.51 16 19 C 0.07 1.79 5.42 -17.34 -0.09 1.70 16 20 N -0.81 -22.07 10.61 55.55 0.59 -21.48 16 21 Si 0.92 19.49 29.56 -169.99 -5.03 14.47 16 22 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 23 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 24 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 25 C -0.20 -5.01 9.74 -39.26 -0.38 -5.39 16 26 C -0.12 -2.54 9.90 -39.79 -0.39 -2.94 16 27 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.54 8.10 -51.92 -0.42 0.12 16 30 H 0.06 0.27 7.29 -51.93 -0.38 -0.11 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 35 H 0.06 0.27 7.29 -51.93 -0.38 -0.11 16 36 H 0.10 0.57 7.38 -51.93 -0.38 0.19 16 37 H 0.10 0.58 7.38 -51.93 -0.38 0.20 16 38 H 0.08 1.13 8.06 -51.93 -0.42 0.71 16 39 H 0.08 1.10 8.06 -51.93 -0.42 0.69 16 40 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.39 5.13 8.82 -40.82 -0.36 4.77 16 43 H 0.11 2.77 6.22 -52.49 -0.33 2.44 16 44 H 0.13 3.73 6.15 -52.48 -0.32 3.41 16 45 H 0.28 7.03 8.30 -40.82 -0.34 6.69 16 46 H 0.10 2.19 8.06 -52.49 -0.42 1.76 16 47 H 0.09 1.67 8.06 -52.48 -0.42 1.24 16 LS Contribution 384.29 15.07 5.79 5.79 Total: -1.00 -33.77 384.29 -8.99 -42.76 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -7.56 Total: 8.09 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: -2.90 Total: -20.03 kcal Atomic # 7 Polarization: -33.51 SS G_CDS: 0.54 Total: -32.97 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: 0.17 Total: -18.11 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.03 Total: 14.47 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.77 -8.99 -42.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294444154.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.220 kcal (2) G-P(sol) polarization free energy of solvation -33.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds