Wall clock time and date at job start Tue Mar 31 2020 12:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47010 * 2 1 4 4 C 1.53005 * 109.47303 * 240.00072 * 2 1 3 5 5 C 1.50706 * 109.47335 * 120.00156 * 2 1 3 6 6 O 1.20752 * 119.99768 * 359.97438 * 5 2 1 7 7 C 1.50697 * 120.00027 * 180.02562 * 5 2 1 8 8 C 1.52995 * 109.47125 * 179.97438 * 7 5 2 9 9 C 1.53001 * 109.47512 * 179.97438 * 8 7 5 10 10 C 1.50693 * 109.47459 * 180.02562 * 9 8 7 11 11 O 1.21284 * 119.99937 * 0.02562 * 10 9 8 12 12 N 1.34781 * 120.00055 * 179.97438 * 10 9 8 13 13 C 1.39234 * 119.99787 * 184.28933 * 12 10 9 14 14 C 1.39480 * 119.83810 * 324.71162 * 13 12 10 15 15 C 1.36373 * 120.17151 * 180.29688 * 14 13 12 16 16 C 1.40869 * 119.82638 * 359.48095 * 15 14 13 17 17 C 1.41149 * 120.16615 * 180.24677 * 16 15 14 18 18 H 1.08002 * 120.00564 * 215.01718 * 17 16 15 19 19 C 1.39907 * 119.99949 * 35.01923 * 17 16 15 20 20 N 1.30873 * 119.99679 * 355.54737 * 19 17 16 21 21 Si 1.86795 * 120.00282 * 175.54331 * 19 17 16 22 22 H 1.48497 * 109.47333 * 59.99949 * 21 19 17 23 23 H 1.48503 * 109.47069 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47361 * 299.99743 * 21 19 17 25 25 C 1.40878 * 119.67448 * 0.51928 * 16 15 14 26 26 C 1.36371 * 119.82161 * 359.73123 * 25 16 15 27 27 H 1.08996 * 109.47277 * 299.99475 * 1 2 3 28 28 H 1.08999 * 109.47252 * 60.00341 * 1 2 3 29 29 H 1.09011 * 109.47283 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47283 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.46835 * 299.99915 * 3 2 1 32 32 H 1.08998 * 109.47392 * 60.00286 * 3 2 1 33 33 H 1.08997 * 109.47163 * 300.00136 * 4 2 1 34 34 H 1.08999 * 109.46855 * 59.99906 * 4 2 1 35 35 H 1.09002 * 109.47167 * 179.97438 * 4 2 1 36 36 H 1.08997 * 109.47301 * 59.99535 * 7 5 2 37 37 H 1.09002 * 109.47402 * 300.00153 * 7 5 2 38 38 H 1.09005 * 109.46981 * 60.00015 * 8 7 5 39 39 H 1.08996 * 109.47130 * 300.00092 * 8 7 5 40 40 H 1.09005 * 109.46772 * 60.00148 * 9 8 7 41 41 H 1.09001 * 109.46975 * 300.00995 * 9 8 7 42 42 H 0.96994 * 119.99721 * 4.29555 * 12 10 9 43 43 H 1.07997 * 119.91386 * 0.02562 * 14 13 12 44 44 H 1.08003 * 120.08733 * 179.70254 * 15 14 13 45 45 H 0.97006 * 120.00240 * 180.02562 * 20 19 17 46 46 H 1.07991 * 120.08734 * 179.71251 * 25 16 15 47 47 H 1.08005 * 119.91371 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7105 1.2305 6 8 1.2476 -1.1690 2.0255 7 6 3.5139 -0.8476 1.4692 8 6 3.7518 -1.6029 2.7783 9 6 5.2561 -1.7427 3.0204 10 6 5.4903 -2.4872 4.3095 11 8 4.5470 -2.8688 4.9695 12 7 6.7481 -2.7298 4.7286 13 6 6.9657 -3.4942 5.8718 14 6 6.0806 -3.4037 6.9460 15 6 6.2905 -4.1447 8.0714 16 6 7.3987 -5.0114 8.1430 17 6 7.6199 -5.7856 9.3023 18 1 8.6281 -5.9866 9.6333 19 6 6.5331 -6.2927 10.0228 20 7 5.3119 -5.9776 9.6731 21 14 6.8248 -7.4195 11.4838 22 1 7.6313 -6.7057 12.5062 23 1 5.5199 -7.8169 12.0708 24 1 7.5552 -8.6323 11.0355 25 6 8.2883 -5.0975 7.0541 26 6 8.0681 -4.3463 5.9374 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0278 -0.0005 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6767 -1.7489 -1.2493 34 1 1.6766 -0.2074 -2.1392 35 1 3.1300 -0.7208 -1.2495 36 1 3.9647 0.1426 1.5344 37 1 3.9655 -1.3986 0.6442 38 1 3.3010 -2.5932 2.7135 39 1 3.3004 -1.0515 3.6031 40 1 5.7072 -0.7526 3.0851 41 1 5.7071 -2.2943 2.1955 42 1 7.5017 -2.3719 4.2338 43 1 5.2292 -2.7417 6.8880 44 1 5.6069 -4.0699 8.9042 45 1 4.5583 -6.3288 10.1728 46 1 9.1426 -5.7562 7.1037 47 1 8.7494 -4.4108 5.1019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294444154.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:03 Heat of formation + Delta-G solvation = -100.578482 kcal Electronic energy + Delta-G solvation = -25326.939785 eV Core-core repulsion = 21665.658655 eV Total energy + Delta-G solvation = -3661.281130 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.31913 -40.95214 -39.10144 -36.69778 -36.22430 -35.26615 -34.66527 -31.50767 -31.09395 -29.81678 -28.15533 -27.97735 -26.80994 -24.89434 -23.28285 -22.84501 -21.92940 -20.98026 -19.35306 -19.22995 -18.37767 -17.70791 -17.15022 -17.03041 -16.89001 -16.15525 -16.11658 -15.76777 -15.26091 -15.03176 -14.79279 -14.60172 -14.44514 -14.15238 -13.97037 -13.63590 -13.44003 -13.23608 -13.17778 -13.06972 -12.88312 -12.79356 -12.74906 -12.63274 -12.51344 -12.44882 -12.31622 -11.85792 -11.77924 -11.73064 -11.71533 -11.67944 -11.20067 -10.75460 -10.47818 -10.28968 -9.46236 -8.74109 -8.50298 -6.33735 0.81979 1.05626 1.12087 1.37012 1.45924 1.50603 1.85296 2.22355 2.38738 2.81382 3.03456 3.67019 3.71781 3.82247 3.94263 4.03839 4.07831 4.08565 4.37303 4.44125 4.48207 4.62615 4.67383 4.71865 4.73173 4.75940 4.81940 4.88783 4.99597 5.00359 5.03149 5.08103 5.11859 5.14969 5.19079 5.23811 5.33388 5.36822 5.40976 5.41529 5.44732 5.70707 5.87762 6.08610 6.14724 6.35354 6.62729 6.70230 6.77984 6.94997 7.02406 7.49418 8.42502 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.026626 B = 0.002056 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.342905 B =13613.490707 C =14357.776961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.116 4.116 3 C -0.137 4.137 4 C -0.137 4.137 5 C 0.356 3.644 6 O -0.502 6.502 7 C -0.163 4.163 8 C -0.096 4.096 9 C -0.119 4.119 10 C 0.486 3.514 11 O -0.587 6.587 12 N -0.645 5.645 13 C 0.021 3.979 14 C -0.112 4.112 15 C -0.170 4.170 16 C 0.063 3.937 17 C -0.497 4.497 18 H 0.081 0.919 19 C 0.019 3.981 20 N -0.850 5.850 21 Si 0.993 3.007 22 H -0.256 1.256 23 H -0.275 1.275 24 H -0.258 1.258 25 C -0.209 4.209 26 C -0.108 4.108 27 H 0.041 0.959 28 H 0.082 0.918 29 H 0.041 0.959 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.047 0.953 33 H 0.046 0.954 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.038 0.962 39 H 0.040 0.960 40 H 0.133 0.867 41 H 0.132 0.868 42 H 0.422 0.578 43 H 0.092 0.908 44 H 0.101 0.899 45 H 0.281 0.719 46 H 0.114 0.886 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.013 14.316 -24.080 28.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.117 4.117 3 C -0.194 4.194 4 C -0.194 4.194 5 C 0.234 3.766 6 O -0.378 6.378 7 C -0.200 4.200 8 C -0.134 4.134 9 C -0.158 4.158 10 C 0.276 3.724 11 O -0.466 6.466 12 N -0.291 5.291 13 C -0.073 4.073 14 C -0.133 4.133 15 C -0.191 4.191 16 C 0.060 3.940 17 C -0.527 4.527 18 H 0.099 0.901 19 C -0.192 4.192 20 N -0.478 5.478 21 Si 0.813 3.187 22 H -0.180 1.180 23 H -0.200 1.200 24 H -0.182 1.182 25 C -0.228 4.228 26 C -0.128 4.128 27 H 0.060 0.940 28 H 0.101 0.899 29 H 0.060 0.940 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.151 0.849 41 H 0.150 0.850 42 H 0.260 0.740 43 H 0.110 0.890 44 H 0.119 0.881 45 H 0.091 0.909 46 H 0.132 0.868 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.311 13.789 -23.183 27.006 hybrid contribution -0.398 -0.672 1.133 1.376 sum -1.709 13.117 -22.050 25.713 Atomic orbital electron populations 1.21748 0.94021 1.01523 1.02158 1.21260 0.96892 0.98486 0.95043 1.21868 1.02899 0.91648 1.02973 1.21870 1.02896 0.99551 0.95090 1.25379 0.92167 0.73842 0.85184 1.90434 1.60619 1.40405 1.46356 1.22210 0.94197 1.04817 0.98772 1.21052 0.94804 1.00143 0.97437 1.21692 0.97846 1.03027 0.93259 1.21910 0.82083 0.79843 0.88600 1.90735 1.43651 1.53448 1.58803 1.42970 1.08808 1.51443 1.25860 1.17395 0.99885 1.01584 0.88409 1.20664 0.98700 1.00541 0.93358 1.21169 1.01364 0.98404 0.98145 1.18078 0.91934 0.90350 0.93591 1.19743 0.94389 1.29661 1.08950 0.90059 1.26906 0.94069 0.97702 1.00525 1.69927 1.00169 1.39141 1.38566 0.85097 0.78373 0.78329 0.76887 1.18018 1.19965 1.18225 1.20979 1.03080 1.04534 0.94248 1.20477 0.97758 0.95924 0.98626 0.93967 0.89936 0.94006 0.89437 0.89925 0.93418 0.93460 0.89917 0.89443 0.84750 0.84827 0.94328 0.94154 0.84889 0.85012 0.74010 0.88988 0.88084 0.90851 0.86780 0.84201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 7.76 71.98 0.56 -1.59 16 2 C -0.12 -1.43 0.87 -52.93 -0.05 -1.48 16 3 C -0.14 -1.01 8.25 71.98 0.59 -0.41 16 4 C -0.14 -1.02 8.26 71.98 0.59 -0.43 16 5 C 0.36 6.86 5.97 29.10 0.17 7.04 16 6 O -0.50 -15.53 15.61 -1.43 -0.02 -15.55 16 7 C -0.16 -2.10 4.97 29.85 0.15 -1.95 16 8 C -0.10 -2.26 3.79 30.59 0.12 -2.14 16 9 C -0.12 -2.18 5.70 29.85 0.17 -2.01 16 10 C 0.49 16.30 7.66 87.65 0.67 16.97 16 11 O -0.59 -27.68 13.40 -3.04 -0.04 -27.72 16 12 N -0.64 -20.70 5.30 -303.11 -1.61 -22.31 16 13 C 0.02 0.93 6.31 38.57 0.24 1.17 16 14 C -0.11 -6.00 8.61 22.13 0.19 -5.81 16 15 C -0.17 -9.98 8.61 22.48 0.19 -9.78 16 16 C 0.06 3.56 5.55 -21.27 -0.12 3.44 16 17 C -0.50 -27.89 9.02 23.39 0.21 -27.68 16 18 H 0.08 4.27 7.85 -2.91 -0.02 4.25 16 19 C 0.02 1.02 5.42 85.24 0.46 1.49 16 20 N -0.85 -49.19 10.61 21.82 0.23 -48.96 16 21 Si 0.99 40.92 29.56 68.60 2.03 42.95 16 22 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 23 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 24 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 25 C -0.21 -10.10 9.74 22.48 0.22 -9.88 16 26 C -0.11 -4.51 9.90 22.13 0.22 -4.29 16 27 H 0.04 0.79 8.10 -2.39 -0.02 0.78 16 28 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.04 0.79 8.10 -2.38 -0.02 0.77 16 30 H 0.09 0.27 7.29 -2.39 -0.02 0.25 16 31 H 0.08 0.38 8.14 -2.39 -0.02 0.37 16 32 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.09 0.28 7.29 -2.39 -0.02 0.26 16 36 H 0.13 0.83 7.38 -2.39 -0.02 0.81 16 37 H 0.13 0.85 7.38 -2.39 -0.02 0.83 16 38 H 0.04 1.18 8.06 -2.38 -0.02 1.16 16 39 H 0.04 1.22 8.06 -2.39 -0.02 1.20 16 40 H 0.13 1.41 8.14 -2.38 -0.02 1.39 16 41 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.42 8.90 8.82 -92.71 -0.82 8.08 16 43 H 0.09 5.10 6.22 -2.91 -0.02 5.08 16 44 H 0.10 6.36 6.15 -2.91 -0.02 6.34 16 45 H 0.28 15.02 8.30 -92.70 -0.77 14.25 16 46 H 0.11 5.01 8.06 -2.91 -0.02 4.99 16 47 H 0.14 4.44 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -84.55 384.29 5.34 -79.21 By element: Atomic # 1 Polarization: 29.59 SS G_CDS: 0.15 Total: 29.74 kcal Atomic # 6 Polarization: -41.96 SS G_CDS: 4.60 Total: -37.36 kcal Atomic # 7 Polarization: -69.89 SS G_CDS: -1.38 Total: -71.27 kcal Atomic # 8 Polarization: -43.21 SS G_CDS: -0.06 Total: -43.27 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.03 Total: 42.95 kcal Total: -84.55 5.34 -79.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294444154.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.366 kcal (2) G-P(sol) polarization free energy of solvation -84.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds