Wall clock time and date at job start Tue Mar 31 2020 12:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47366 * 2 1 4 4 C 1.52998 * 109.47366 * 180.02562 * 3 2 1 5 5 H 1.09004 * 110.53555 * 307.60649 * 4 3 2 6 6 C 1.54889 * 110.49116 * 70.22222 * 4 3 2 7 7 C 1.54884 * 102.75126 * 156.62172 * 6 4 3 8 8 C 1.54267 * 104.19487 * 322.05661 * 7 6 4 9 9 C 1.53870 * 106.59813 * 23.61253 * 8 7 6 10 10 H 1.09006 * 110.03254 * 240.66361 * 9 8 7 11 11 C 1.50701 * 110.03578 * 119.28501 * 9 8 7 12 12 O 1.21283 * 119.99929 * 241.45305 * 11 9 8 13 13 N 1.34781 * 120.00001 * 61.44573 * 11 9 8 14 14 C 1.39922 * 119.99649 * 174.55714 * 13 11 9 15 15 C 1.38959 * 120.04382 * 325.29633 * 14 13 11 16 16 C 1.38151 * 120.06982 * 179.97438 * 15 14 13 17 17 C 1.38167 * 120.14234 * 359.97438 * 16 15 14 18 18 C 1.38911 * 120.06901 * 0.27569 * 17 16 15 19 19 O 1.35750 * 120.03648 * 179.70792 * 18 17 16 20 20 C 1.34824 * 116.99997 * 185.61683 * 19 18 17 21 21 H 1.08001 * 120.00599 * 5.35454 * 20 19 18 22 22 C 1.38661 * 120.00025 * 185.35727 * 20 19 18 23 23 N 1.31556 * 119.99660 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00102 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47049 * 59.99987 * 24 22 20 26 26 H 1.48504 * 109.47215 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47296 * 299.99980 * 24 22 20 28 28 C 1.38723 * 120.03070 * 145.27127 * 14 13 11 29 29 H 1.08995 * 109.46675 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47160 * 300.00576 * 1 2 3 31 31 H 1.08995 * 109.46645 * 60.00383 * 1 2 3 32 32 H 1.09001 * 109.47713 * 239.99708 * 2 1 3 33 33 H 1.09007 * 109.47102 * 119.99539 * 2 1 3 34 34 H 1.09000 * 109.47461 * 59.99185 * 3 2 1 35 35 H 1.09007 * 109.46633 * 299.99826 * 3 2 1 36 36 H 1.09001 * 110.75466 * 38.30151 * 6 4 3 37 37 H 1.08998 * 110.91221 * 275.01574 * 6 4 3 38 38 H 1.09000 * 110.48707 * 203.37892 * 7 6 4 39 39 H 1.08998 * 110.48861 * 80.73447 * 7 6 4 40 40 H 1.09001 * 110.03289 * 264.32113 * 8 7 6 41 41 H 1.09000 * 110.06991 * 142.91558 * 8 7 6 42 42 H 0.97002 * 119.99974 * 354.56934 * 13 11 9 43 43 H 1.08004 * 119.96233 * 359.95372 * 15 14 13 44 44 H 1.08000 * 119.92900 * 180.02562 * 16 15 14 45 45 H 1.07994 * 119.96875 * 180.02562 * 17 16 15 46 46 H 0.97003 * 119.99816 * 180.02562 * 23 22 20 47 47 H 1.07993 * 120.06982 * 0.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9527 0.8194 0.8078 6 6 4.1117 0.9517 -1.3662 7 6 5.5302 1.5717 -1.4141 8 6 5.3563 2.9642 -0.7735 9 6 4.1100 2.8820 0.1252 10 1 3.3579 3.5947 -0.2133 11 6 4.4855 3.1693 1.5562 12 8 4.3175 2.3232 2.4087 13 7 5.0083 4.3663 1.8884 14 6 5.2509 4.6752 3.2314 15 6 4.3966 4.2013 4.2196 16 6 4.6359 4.5056 5.5458 17 6 5.7250 5.2812 5.8940 18 6 6.5799 5.7623 4.9105 19 8 7.6464 6.5291 5.2529 20 6 8.3679 7.0593 4.2449 21 1 8.0387 6.9387 3.2234 22 6 9.5328 7.7596 4.5197 23 7 9.9336 7.9069 5.7640 24 14 10.5327 8.4935 3.1231 25 1 9.6974 9.4666 2.3743 26 1 11.7228 9.1873 3.6777 27 1 10.9727 7.4108 2.2069 28 6 6.3450 5.4546 3.5778 29 1 -0.3632 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6766 1.9564 0.8899 35 1 1.6767 1.9562 -0.8901 36 1 3.4973 1.3291 -2.1837 37 1 4.1644 -0.1366 -1.3955 38 1 5.8707 1.6660 -2.4453 39 1 6.2295 0.9696 -0.8341 40 1 5.2087 3.7161 -1.5488 41 1 6.2326 3.2126 -0.1748 42 1 5.2162 5.0136 1.1966 43 1 3.5444 3.5948 3.9505 44 1 3.9707 4.1358 6.3120 45 1 5.9097 5.5169 6.9316 46 1 10.7483 8.3971 5.9562 47 1 7.0104 5.8241 2.8117 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294533998.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:56 Heat of formation + Delta-G solvation = -67.806382 kcal Electronic energy + Delta-G solvation = -26264.174632 eV Core-core repulsion = 22604.314607 eV Total energy + Delta-G solvation = -3659.860025 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.60808 -39.01333 -37.86398 -36.29040 -34.75954 -34.14933 -32.24761 -30.17874 -29.94294 -29.04885 -28.11604 -25.44559 -25.27177 -22.87795 -21.83329 -21.70220 -20.99751 -20.19572 -19.47868 -17.96149 -17.82029 -16.79932 -15.77218 -15.67677 -15.38612 -15.07120 -14.99150 -14.55079 -14.15304 -14.04757 -13.89534 -13.57882 -13.52160 -13.21862 -12.98862 -12.82432 -12.50374 -12.38334 -11.78270 -11.66477 -11.62286 -11.53472 -11.35757 -11.12519 -11.04396 -10.94793 -10.87655 -10.80749 -10.75007 -10.64126 -10.53144 -10.48296 -9.82200 -9.59843 -9.33734 -8.81199 -7.73192 -7.15845 -6.45461 -4.05234 1.97709 2.37536 2.87590 3.10867 3.12415 3.15042 3.27966 3.95094 4.20147 4.34375 4.49766 4.60377 4.79960 4.84266 4.95562 5.02936 5.09741 5.14640 5.25118 5.27542 5.29663 5.37637 5.43045 5.45220 5.61571 5.65824 5.69155 5.70630 5.71917 5.84777 5.91686 5.92291 5.98602 6.03210 6.08119 6.09030 6.16339 6.25174 6.28514 6.35600 6.64063 6.98171 6.99939 7.11866 7.30769 7.41712 7.71581 7.81827 7.98552 8.35294 8.99707 9.70385 10.72548 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017332 B = 0.002936 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.089108 B = 9534.411175 C =10895.478373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.110 4.110 4 C -0.078 4.078 5 H 0.095 0.905 6 C -0.118 4.118 7 C -0.124 4.124 8 C -0.120 4.120 9 C -0.110 4.110 10 H 0.100 0.900 11 C 0.516 3.484 12 O -0.517 6.517 13 N -0.671 5.671 14 C 0.181 3.819 15 C -0.205 4.205 16 C -0.063 4.063 17 C -0.201 4.201 18 C 0.168 3.832 19 O -0.176 6.176 20 C -0.392 4.392 21 H 0.089 0.911 22 C 0.040 3.960 23 N -0.862 5.862 24 Si 0.940 3.060 25 H -0.270 1.270 26 H -0.278 1.278 27 H -0.271 1.271 28 C -0.256 4.256 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.405 0.595 43 H 0.116 0.884 44 H 0.115 0.885 45 H 0.118 0.882 46 H 0.270 0.730 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.394 -10.868 -15.768 23.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.147 4.147 4 C -0.097 4.097 5 H 0.114 0.886 6 C -0.156 4.156 7 C -0.161 4.161 8 C -0.158 4.158 9 C -0.131 4.131 10 H 0.118 0.882 11 C 0.303 3.697 12 O -0.392 6.392 13 N -0.316 5.316 14 C 0.088 3.912 15 C -0.226 4.226 16 C -0.082 4.082 17 C -0.221 4.221 18 C 0.114 3.886 19 O -0.079 6.079 20 C -0.469 4.469 21 H 0.107 0.893 22 C -0.165 4.165 23 N -0.497 5.497 24 Si 0.764 3.236 25 H -0.195 1.195 26 H -0.203 1.203 27 H -0.196 1.196 28 C -0.278 4.278 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.240 0.760 43 H 0.134 0.866 44 H 0.133 0.867 45 H 0.136 0.864 46 H 0.080 0.920 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.242 -11.304 -14.845 22.880 hybrid contribution 0.709 0.813 -1.093 1.536 sum -12.533 -10.492 -15.938 22.829 Atomic orbital electron populations 1.21777 0.96129 1.01400 1.01704 1.21514 0.95542 0.96933 1.02077 1.21629 0.94305 0.96994 1.01815 1.21980 0.95184 0.94072 0.98476 0.88648 1.22578 0.95863 1.00326 0.96829 1.22339 0.97487 0.95723 1.00598 1.22176 0.96660 0.98512 0.98440 1.22056 0.99198 0.99946 0.91911 0.88199 1.20663 0.76809 0.81280 0.90937 1.90700 1.52220 1.45147 1.51142 1.43551 1.63412 1.17229 1.07364 1.17420 0.94003 0.97201 0.82592 1.20496 1.01924 1.07852 0.92307 1.20521 0.96085 0.96351 0.95248 1.20243 0.97447 1.05858 0.98512 1.19089 0.88403 0.89515 0.91634 1.84017 1.34055 1.55053 1.34795 1.21213 1.05328 1.33030 0.87301 0.89348 1.25275 0.96282 0.97120 0.97797 1.70027 1.22983 1.38716 1.17968 0.85805 0.78985 0.79132 0.79630 1.19532 1.20254 1.19571 1.20830 1.00046 1.09636 0.97255 0.92953 0.92745 0.92950 0.92085 0.91857 0.91837 0.92168 0.91414 0.91360 0.91407 0.91392 0.90758 0.91090 0.75952 0.86560 0.86652 0.86391 0.91960 0.85311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 37.16 0.37 -0.77 16 2 C -0.12 -1.02 5.81 -26.73 -0.16 -1.17 16 3 C -0.11 -0.98 4.56 -26.73 -0.12 -1.11 16 4 C -0.08 -0.78 2.17 -88.96 -0.19 -0.97 16 5 H 0.10 1.20 6.90 -51.93 -0.36 0.84 16 6 C -0.12 -0.94 5.67 -24.74 -0.14 -1.08 16 7 C -0.12 -1.04 6.83 -25.07 -0.17 -1.21 16 8 C -0.12 -1.08 6.30 -25.61 -0.16 -1.24 16 9 C -0.11 -1.13 2.88 -90.65 -0.26 -1.39 16 10 H 0.10 0.86 7.84 -51.93 -0.41 0.45 16 11 C 0.52 7.54 6.66 -10.98 -0.07 7.47 16 12 O -0.52 -9.41 13.20 5.56 0.07 -9.33 16 13 N -0.67 -10.16 5.19 -9.88 -0.05 -10.21 16 14 C 0.18 3.49 6.25 -83.72 -0.52 2.97 16 15 C -0.20 -3.98 8.65 -39.35 -0.34 -4.32 16 16 C -0.06 -1.21 10.03 -39.64 -0.40 -1.61 16 17 C -0.20 -4.36 9.99 -39.36 -0.39 -4.75 16 18 C 0.17 4.10 6.64 -39.13 -0.26 3.84 16 19 O -0.18 -5.02 9.76 0.07 0.00 -5.02 16 20 C -0.39 -10.87 9.44 30.89 0.29 -10.58 16 21 H 0.09 2.24 5.29 -52.49 -0.28 1.96 16 22 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 23 N -0.86 -25.21 13.67 55.48 0.76 -24.45 16 24 Si 0.94 20.26 29.55 -169.99 -5.02 15.24 16 25 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 26 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 27 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 28 C -0.26 -5.58 9.05 -39.20 -0.35 -5.94 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.45 7.55 -51.93 -0.39 0.06 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.47 8.02 -51.93 -0.42 0.05 16 36 H 0.07 0.47 7.96 -51.93 -0.41 0.06 16 37 H 0.07 0.51 8.06 -51.93 -0.42 0.09 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.73 7.59 -51.93 -0.39 0.34 16 42 H 0.41 4.90 8.71 -40.82 -0.36 4.54 16 43 H 0.12 2.20 6.52 -52.48 -0.34 1.86 16 44 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 45 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 46 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 47 H 0.13 2.75 5.71 -52.49 -0.30 2.45 16 LS Contribution 378.75 15.07 5.71 5.71 Total: -1.00 -32.19 378.75 -8.95 -41.14 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -7.44 Total: 7.79 kcal Atomic # 6 Polarization: -17.88 SS G_CDS: -2.98 Total: -20.87 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: 0.71 Total: -34.66 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: 0.07 Total: -14.35 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.19 -8.95 -41.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294533998.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.664 kcal (2) G-P(sol) polarization free energy of solvation -32.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds