Wall clock time and date at job start Tue Mar 31 2020 12:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47366 * 2 1 4 4 C 1.52998 * 109.47366 * 180.02562 * 3 2 1 5 5 H 1.09004 * 110.53555 * 307.60649 * 4 3 2 6 6 C 1.54889 * 110.49116 * 70.22222 * 4 3 2 7 7 C 1.54884 * 102.75126 * 156.62172 * 6 4 3 8 8 C 1.54267 * 104.19487 * 322.05661 * 7 6 4 9 9 C 1.53870 * 106.59813 * 23.61253 * 8 7 6 10 10 H 1.09006 * 110.03254 * 240.66361 * 9 8 7 11 11 C 1.50701 * 110.03578 * 119.28501 * 9 8 7 12 12 O 1.21283 * 119.99929 * 241.45305 * 11 9 8 13 13 N 1.34781 * 120.00001 * 61.44573 * 11 9 8 14 14 C 1.39922 * 119.99649 * 174.55714 * 13 11 9 15 15 C 1.38959 * 120.04382 * 325.29633 * 14 13 11 16 16 C 1.38151 * 120.06982 * 179.97438 * 15 14 13 17 17 C 1.38167 * 120.14234 * 359.97438 * 16 15 14 18 18 C 1.38911 * 120.06901 * 0.27569 * 17 16 15 19 19 O 1.35750 * 120.03648 * 179.70792 * 18 17 16 20 20 C 1.34824 * 116.99997 * 185.61683 * 19 18 17 21 21 H 1.08001 * 120.00599 * 5.35454 * 20 19 18 22 22 C 1.38661 * 120.00025 * 185.35727 * 20 19 18 23 23 N 1.31556 * 119.99660 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00102 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47049 * 59.99987 * 24 22 20 26 26 H 1.48504 * 109.47215 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47296 * 299.99980 * 24 22 20 28 28 C 1.38723 * 120.03070 * 145.27127 * 14 13 11 29 29 H 1.08995 * 109.46675 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47160 * 300.00576 * 1 2 3 31 31 H 1.08995 * 109.46645 * 60.00383 * 1 2 3 32 32 H 1.09001 * 109.47713 * 239.99708 * 2 1 3 33 33 H 1.09007 * 109.47102 * 119.99539 * 2 1 3 34 34 H 1.09000 * 109.47461 * 59.99185 * 3 2 1 35 35 H 1.09007 * 109.46633 * 299.99826 * 3 2 1 36 36 H 1.09001 * 110.75466 * 38.30151 * 6 4 3 37 37 H 1.08998 * 110.91221 * 275.01574 * 6 4 3 38 38 H 1.09000 * 110.48707 * 203.37892 * 7 6 4 39 39 H 1.08998 * 110.48861 * 80.73447 * 7 6 4 40 40 H 1.09001 * 110.03289 * 264.32113 * 8 7 6 41 41 H 1.09000 * 110.06991 * 142.91558 * 8 7 6 42 42 H 0.97002 * 119.99974 * 354.56934 * 13 11 9 43 43 H 1.08004 * 119.96233 * 359.95372 * 15 14 13 44 44 H 1.08000 * 119.92900 * 180.02562 * 16 15 14 45 45 H 1.07994 * 119.96875 * 180.02562 * 17 16 15 46 46 H 0.97003 * 119.99816 * 180.02562 * 23 22 20 47 47 H 1.07993 * 120.06982 * 0.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9527 0.8194 0.8078 6 6 4.1117 0.9517 -1.3662 7 6 5.5302 1.5717 -1.4141 8 6 5.3563 2.9642 -0.7735 9 6 4.1100 2.8820 0.1252 10 1 3.3579 3.5947 -0.2133 11 6 4.4855 3.1693 1.5562 12 8 4.3175 2.3232 2.4087 13 7 5.0083 4.3663 1.8884 14 6 5.2509 4.6752 3.2314 15 6 4.3966 4.2013 4.2196 16 6 4.6359 4.5056 5.5458 17 6 5.7250 5.2812 5.8940 18 6 6.5799 5.7623 4.9105 19 8 7.6464 6.5291 5.2529 20 6 8.3679 7.0593 4.2449 21 1 8.0387 6.9387 3.2234 22 6 9.5328 7.7596 4.5197 23 7 9.9336 7.9069 5.7640 24 14 10.5327 8.4935 3.1231 25 1 9.6974 9.4666 2.3743 26 1 11.7228 9.1873 3.6777 27 1 10.9727 7.4108 2.2069 28 6 6.3450 5.4546 3.5778 29 1 -0.3632 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6766 1.9564 0.8899 35 1 1.6767 1.9562 -0.8901 36 1 3.4973 1.3291 -2.1837 37 1 4.1644 -0.1366 -1.3955 38 1 5.8707 1.6660 -2.4453 39 1 6.2295 0.9696 -0.8341 40 1 5.2087 3.7161 -1.5488 41 1 6.2326 3.2126 -0.1748 42 1 5.2162 5.0136 1.1966 43 1 3.5444 3.5948 3.9505 44 1 3.9707 4.1358 6.3120 45 1 5.9097 5.5169 6.9316 46 1 10.7483 8.3971 5.9562 47 1 7.0104 5.8241 2.8117 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294533998.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:55 Heat of formation + Delta-G solvation = -85.903672 kcal Electronic energy + Delta-G solvation = -26264.959390 eV Core-core repulsion = 22604.314607 eV Total energy + Delta-G solvation = -3660.644783 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.83232 -40.60396 -39.05465 -37.87591 -35.76932 -35.26492 -34.23958 -31.41698 -30.72117 -30.56705 -29.43676 -27.30336 -26.09681 -24.14829 -23.52010 -22.43097 -22.16986 -21.10951 -20.57391 -19.73761 -19.32883 -18.16676 -17.16958 -16.84426 -16.59462 -16.43394 -16.03698 -15.94881 -15.63812 -15.55700 -15.27742 -14.73797 -14.59866 -14.44773 -14.20992 -13.87323 -13.60149 -13.52322 -13.22235 -13.12405 -12.79835 -12.64660 -12.51357 -12.36970 -12.26415 -12.15380 -12.01659 -11.72364 -11.60939 -11.49170 -11.45078 -11.33654 -11.26565 -11.22201 -10.79390 -10.65733 -9.38200 -8.89941 -8.46984 -6.16013 0.37757 0.66978 1.35430 1.45843 1.52011 1.61701 2.04513 2.17902 2.82151 3.15305 3.40507 3.47183 3.61740 3.67365 4.03778 4.12584 4.16083 4.23599 4.30122 4.35907 4.42386 4.46228 4.54900 4.59724 4.63685 4.65902 4.74385 4.76478 4.79620 4.95994 4.99972 5.01184 5.05736 5.08645 5.09524 5.21043 5.25516 5.27699 5.35449 5.38515 5.46180 5.47119 5.49686 5.60437 5.64423 5.65602 6.00384 6.14930 6.46083 6.96968 7.12890 7.76214 8.75815 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017332 B = 0.002936 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.089108 B = 9534.411175 C =10895.478373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.106 4.106 4 C -0.079 4.079 5 H 0.062 0.938 6 C -0.110 4.110 7 C -0.125 4.125 8 C -0.119 4.119 9 C -0.101 4.101 10 H 0.127 0.873 11 C 0.514 3.486 12 O -0.556 6.556 13 N -0.664 5.664 14 C 0.187 3.813 15 C -0.200 4.200 16 C -0.052 4.052 17 C -0.215 4.215 18 C 0.134 3.866 19 O -0.226 6.226 20 C -0.414 4.414 21 H 0.103 0.897 22 C -0.022 4.022 23 N -0.920 5.920 24 Si 1.019 2.981 25 H -0.254 1.254 26 H -0.274 1.274 27 H -0.257 1.257 28 C -0.260 4.260 29 H 0.057 0.943 30 H 0.045 0.955 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.045 0.955 34 H 0.044 0.956 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.050 0.950 40 H 0.102 0.898 41 H 0.053 0.947 42 H 0.422 0.578 43 H 0.127 0.873 44 H 0.153 0.847 45 H 0.119 0.881 46 H 0.273 0.727 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.979 -11.392 -19.414 27.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.143 4.143 4 C -0.098 4.098 5 H 0.081 0.919 6 C -0.148 4.148 7 C -0.163 4.163 8 C -0.157 4.157 9 C -0.122 4.122 10 H 0.145 0.855 11 C 0.304 3.696 12 O -0.433 6.433 13 N -0.310 5.310 14 C 0.093 3.907 15 C -0.221 4.221 16 C -0.070 4.070 17 C -0.235 4.235 18 C 0.083 3.917 19 O -0.132 6.132 20 C -0.490 4.490 21 H 0.120 0.880 22 C -0.220 4.220 23 N -0.557 5.557 24 Si 0.837 3.163 25 H -0.178 1.178 26 H -0.198 1.198 27 H -0.182 1.182 28 C -0.282 4.282 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.099 0.901 36 H 0.107 0.893 37 H 0.090 0.910 38 H 0.106 0.894 39 H 0.069 0.931 40 H 0.121 0.879 41 H 0.072 0.928 42 H 0.260 0.740 43 H 0.145 0.855 44 H 0.171 0.829 45 H 0.137 0.863 46 H 0.082 0.918 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.877 -11.851 -18.533 26.556 hybrid contribution 0.960 0.769 0.056 1.232 sum -13.916 -11.082 -18.477 25.649 Atomic orbital electron populations 1.21770 0.95416 1.01872 1.01846 1.21504 0.96161 0.96523 1.01822 1.21603 0.93504 0.97383 1.01841 1.21948 0.95851 0.93302 0.98734 0.91946 1.22555 0.95630 1.00624 0.95942 1.22362 0.97482 0.95049 1.01379 1.22227 0.95067 0.99773 0.98599 1.22152 1.00542 1.00803 0.88722 0.85529 1.21545 0.75343 0.80157 0.92562 1.90686 1.53610 1.46197 1.52763 1.43584 1.63244 1.18090 1.06060 1.17484 0.92767 0.95714 0.84781 1.20807 1.01840 1.06911 0.92534 1.20909 0.95265 0.94609 0.96247 1.20474 0.98069 1.06572 0.98364 1.19613 0.88284 0.90300 0.93513 1.83984 1.35939 1.57310 1.35942 1.21766 1.05815 1.33484 0.87961 0.87982 1.26615 0.97229 0.97300 1.00871 1.70183 1.24032 1.40790 1.20741 0.84652 0.77059 0.78608 0.75937 1.17825 1.19825 1.18164 1.20864 1.00872 1.10151 0.96317 0.92383 0.93555 0.91828 0.90858 0.93628 0.93720 0.90078 0.89303 0.91030 0.89428 0.93113 0.87902 0.92812 0.74034 0.85475 0.82904 0.86252 0.91811 0.85305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.91 71.98 0.71 -1.26 16 2 C -0.12 -1.82 5.81 30.59 0.18 -1.64 16 3 C -0.11 -1.66 4.56 30.59 0.14 -1.52 16 4 C -0.08 -1.42 2.17 -9.72 -0.02 -1.44 16 5 H 0.06 1.56 6.90 -2.39 -0.02 1.54 16 6 C -0.11 -1.41 5.67 31.88 0.18 -1.23 16 7 C -0.13 -1.75 6.83 31.67 0.22 -1.53 16 8 C -0.12 -1.78 6.30 31.32 0.20 -1.58 16 9 C -0.10 -1.81 2.88 -10.82 -0.03 -1.84 16 10 H 0.13 1.66 7.84 -2.38 -0.02 1.64 16 11 C 0.51 14.30 6.66 87.66 0.58 14.88 16 12 O -0.56 -19.92 13.20 -3.04 -0.04 -19.96 16 13 N -0.66 -19.08 5.19 -303.55 -1.58 -20.66 16 14 C 0.19 7.08 6.25 38.14 0.24 7.31 16 15 C -0.20 -7.52 8.65 22.42 0.19 -7.32 16 16 C -0.05 -1.92 10.03 22.23 0.22 -1.70 16 17 C -0.22 -9.51 9.99 22.41 0.22 -9.29 16 18 C 0.13 6.79 6.64 22.56 0.15 6.94 16 19 O -0.23 -13.56 9.76 -22.67 -0.22 -13.78 16 20 C -0.41 -23.79 9.44 67.92 0.64 -23.15 16 21 H 0.10 5.30 5.29 -2.91 -0.02 5.28 16 22 C -0.02 -1.26 5.49 84.84 0.47 -0.79 16 23 N -0.92 -56.17 13.67 21.62 0.30 -55.88 16 24 Si 1.02 41.91 29.55 68.60 2.03 43.93 16 25 H -0.25 -9.68 7.11 99.48 0.71 -8.97 16 26 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 27 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 28 C -0.26 -11.49 9.05 22.51 0.20 -11.29 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.07 0.91 7.55 -2.39 -0.02 0.89 16 33 H 0.04 0.82 8.14 -2.38 -0.02 0.80 16 34 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.08 0.95 8.02 -2.38 -0.02 0.93 16 36 H 0.09 0.82 7.96 -2.39 -0.02 0.80 16 37 H 0.07 0.89 8.06 -2.39 -0.02 0.87 16 38 H 0.09 0.90 8.14 -2.39 -0.02 0.89 16 39 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.05 1.01 7.59 -2.39 -0.02 0.99 16 42 H 0.42 9.31 8.71 -92.71 -0.81 8.50 16 43 H 0.13 4.58 6.52 -2.91 -0.02 4.56 16 44 H 0.15 4.48 8.06 -2.91 -0.02 4.45 16 45 H 0.12 5.12 8.06 -2.91 -0.02 5.10 16 46 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 47 H 0.13 5.57 5.71 -2.91 -0.02 5.55 16 Total: -1.00 -74.35 378.75 5.14 -69.21 By element: Atomic # 1 Polarization: 33.42 SS G_CDS: 0.16 Total: 33.59 kcal Atomic # 6 Polarization: -40.95 SS G_CDS: 4.50 Total: -36.46 kcal Atomic # 7 Polarization: -75.26 SS G_CDS: -1.28 Total: -76.54 kcal Atomic # 8 Polarization: -33.47 SS G_CDS: -0.26 Total: -33.74 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.93 kcal Total: -74.35 5.14 -69.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294533998.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.692 kcal (2) G-P(sol) polarization free energy of solvation -74.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds